Wall clock time and date at job start Tue Mar 31 2020 07:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 C 1.53001 * 109.46989 * 119.99969 * 2 1 3 5 5 C 1.50694 * 109.47168 * 300.00011 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.53000 * 109.46927 * 240.00054 * 2 1 3 14 14 N 1.46497 * 109.47298 * 60.00396 * 13 2 1 15 15 C 1.34774 * 120.00283 * 180.02562 * 14 13 2 16 16 O 1.21280 * 119.99762 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 H 1.09002 * 115.54601 * 325.66759 * 17 15 14 19 19 C 1.52996 * 117.49966 * 179.97438 * 17 15 14 20 20 C 1.53001 * 117.50146 * 111.37085 * 17 15 14 21 21 Cl 1.80295 * 117.50108 * 214.97921 * 20 17 15 22 22 Cl 1.80298 * 117.49835 * 0.02562 * 20 17 15 23 23 H 1.08998 * 109.46768 * 300.00007 * 1 2 3 24 24 H 1.08995 * 109.47095 * 59.99957 * 1 2 3 25 25 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47384 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47386 * 300.00499 * 3 2 1 28 28 H 1.09007 * 109.47390 * 60.00059 * 3 2 1 29 29 H 1.09007 * 109.46922 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.46836 * 60.00468 * 4 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.46807 * 179.97438 * 13 2 1 33 33 H 1.08992 * 109.47112 * 299.99548 * 13 2 1 34 34 H 0.96997 * 119.99674 * 359.97438 * 14 13 2 35 35 H 1.08999 * 117.50001 * 359.97438 * 19 17 15 36 36 H 1.09002 * 117.49732 * 144.99952 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9164 0.8670 2.3807 7 6 1.8712 -0.4817 3.7320 8 7 2.6273 -1.5510 3.8526 9 14 1.2491 0.3994 5.2572 10 1 2.2274 1.4410 5.6608 11 1 -0.0592 1.0369 4.9616 12 1 1.0844 -0.5796 6.3616 13 6 2.0400 -0.7212 -1.2493 14 7 1.5517 -0.0306 -2.4454 15 6 1.8768 -0.4913 -3.6695 16 8 2.5740 -1.4775 -3.7808 17 6 1.3741 0.2188 -4.9000 18 1 0.3817 0.6616 -4.8147 19 6 1.7784 -0.3530 -6.2603 20 6 2.4034 0.9515 -5.7629 21 17 1.8822 2.4818 -6.5611 22 17 4.1250 0.8988 -5.2302 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7216 1.2490 30 1 1.6767 -1.7490 1.2492 31 1 2.8622 -1.8819 4.7337 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2492 34 1 0.9938 0.7578 -2.3564 35 1 2.4083 -1.2425 -6.2653 36 1 1.0518 -0.2866 -7.0702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807722897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:08 Heat of formation + Delta-G solvation = -59.848994 kcal Electronic energy + Delta-G solvation = -19259.112284 eV Core-core repulsion = 16022.659724 eV Total energy + Delta-G solvation = -3236.452560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20948 -39.07136 -38.06402 -37.10987 -36.13010 -35.25759 -33.92171 -29.20743 -28.11473 -27.95194 -25.66948 -24.08714 -23.33627 -21.30727 -19.86512 -18.76895 -18.36246 -17.18367 -16.94827 -16.42745 -16.23165 -15.71460 -15.07052 -14.88631 -14.53815 -14.26771 -14.09234 -13.93138 -13.70774 -13.22032 -13.02775 -12.85839 -12.71837 -12.58082 -12.32786 -12.30401 -12.22324 -11.97851 -11.97213 -11.70127 -11.53030 -11.29905 -11.02225 -10.88481 -10.75921 -10.50827 -10.08706 -8.13642 -6.21293 0.02264 1.00003 1.27574 1.43242 1.43271 1.53665 2.11274 2.34404 2.45276 3.04577 3.21092 3.26039 3.70426 3.98650 4.08711 4.16120 4.23256 4.58592 4.68980 4.72851 4.77003 4.80831 4.97312 5.10674 5.13668 5.38353 5.46182 5.51337 5.54703 5.57612 5.81069 5.90696 6.30689 6.51164 6.94125 7.17472 7.46592 8.98892 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.003257 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.908611 B = 8594.608845 C = 8754.606474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.258 1.258 12 H -0.290 1.290 13 C 0.143 3.857 14 N -0.701 5.701 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.156 4.156 18 H 0.181 0.819 19 C -0.096 4.096 20 C 0.011 3.989 21 Cl -0.077 7.077 22 Cl -0.103 7.103 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.055 0.945 29 H -0.016 1.016 30 H -0.013 1.013 31 H 0.259 0.741 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.414 0.586 35 H 0.122 0.878 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 8.087 -22.295 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.182 1.182 12 H -0.216 1.216 13 C 0.019 3.981 14 N -0.353 5.353 15 C 0.319 3.681 16 O -0.445 6.445 17 C -0.177 4.177 18 H 0.198 0.802 19 C -0.133 4.133 20 C -0.041 4.041 21 Cl -0.050 7.050 22 Cl -0.076 7.076 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.002 0.998 30 H 0.006 0.994 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.253 0.747 35 H 0.140 0.860 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.297 7.413 -22.247 24.040 hybrid contribution 0.204 0.388 1.446 1.511 sum -5.093 7.800 -20.801 22.792 Atomic orbital electron populations 1.21698 0.93345 1.01114 1.01739 1.20708 0.96874 0.96143 0.92781 1.21700 0.99792 0.94803 1.01654 1.18968 0.94179 0.94260 0.92350 1.21601 1.30387 1.12070 0.91077 0.90904 1.25940 0.95689 0.95831 1.02702 1.70122 1.38829 1.24982 1.24069 0.85559 0.79216 0.78111 0.78848 1.20281 1.18236 1.21600 1.21223 0.97724 0.95497 0.83638 1.45875 1.52869 1.31871 1.04647 1.19790 0.79829 0.84024 0.84480 1.90722 1.38906 1.27837 1.87009 1.23337 1.00951 1.01842 0.91605 0.80155 1.24107 1.01124 0.92869 0.95230 1.26572 0.83583 0.89211 1.04743 1.98764 1.89451 1.36280 1.80520 1.98793 1.19999 1.98118 1.90706 0.92683 0.90927 0.94217 0.94691 0.91175 0.92561 0.99773 0.99446 0.93198 0.93756 0.93055 0.74744 0.85976 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 2 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.20 7.65 25.60 0.20 -27.00 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.58 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 8 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 9 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.14 4.88 4.56 86.38 0.39 5.28 16 14 N -0.70 -17.68 4.96 -463.08 -2.30 -19.98 16 15 C 0.53 13.54 6.70 87.66 0.59 14.13 16 16 O -0.57 -19.14 16.09 -3.03 -0.05 -19.19 16 17 C -0.16 -2.45 6.03 -11.54 -0.07 -2.52 16 18 H 0.18 1.55 8.14 -2.39 -0.02 1.53 16 19 C -0.10 -1.26 9.72 30.58 0.30 -0.96 16 20 C 0.01 0.19 3.61 30.58 0.11 0.30 16 21 Cl -0.08 -1.15 29.29 -2.72 -0.08 -1.22 16 22 Cl -0.10 -2.45 28.18 -2.72 -0.08 -2.53 16 23 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 24 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 25 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 28 H 0.06 1.99 6.62 -2.38 -0.02 1.97 16 29 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.41 7.94 6.16 -92.71 -0.57 7.37 16 35 H 0.12 2.02 7.67 -2.39 -0.02 2.00 16 36 H 0.17 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -68.33 326.99 3.56 -64.77 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.52 Total: 7.03 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 3.23 Total: -17.59 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -2.01 Total: -76.58 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -3.59 SS G_CDS: -0.16 Total: -3.75 kcal Total: -68.33 3.56 -64.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.921 kcal (2) G-P(sol) polarization free energy of solvation -68.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds