Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00319 * 3 2 1 5 5 H 1.48500 * 109.46815 * 30.00297 * 3 2 1 6 6 H 1.48493 * 109.46970 * 150.00253 * 3 2 1 7 7 C 1.38790 * 120.00480 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00425 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00304 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47351 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99646 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.39957 * 119.99906 * 184.61497 * 13 11 10 15 15 C 1.38996 * 119.91186 * 324.61853 * 14 13 11 16 16 C 1.38355 * 120.14476 * 180.30267 * 15 14 13 17 17 C 1.37613 * 120.04931 * 359.95439 * 16 15 14 18 18 C 1.39781 * 120.41486 * 0.04492 * 17 16 15 19 19 C 1.38591 * 119.91660 * 144.89376 * 14 13 11 20 20 C 1.47450 * 108.03757 * 180.02562 * 18 17 16 21 21 O 1.21475 * 124.89987 * 179.97438 * 20 18 17 22 22 O 1.34345 * 110.20789 * 359.97438 * 20 18 17 23 23 C 1.45378 * 109.01915 * 0.02562 * 22 20 18 24 24 H 0.96990 * 120.00584 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47031 * 59.99857 * 10 9 7 26 26 H 1.08999 * 109.47477 * 300.00380 * 10 9 7 27 27 H 0.97003 * 119.99681 * 4.60887 * 13 11 10 28 28 H 1.08002 * 119.93229 * 0.27899 * 15 14 13 29 29 H 1.08001 * 119.97731 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.13411 * 359.73932 * 19 14 13 31 31 H 1.09003 * 110.06747 * 119.24140 * 23 22 20 32 32 H 1.09000 * 110.06805 * 240.70352 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7914 -5.5022 -0.0011 13 7 2.8445 -6.3430 -0.0008 14 6 2.3569 -7.6512 -0.0989 15 6 1.1529 -7.9895 0.5077 16 6 0.6695 -9.2828 0.4191 17 6 1.3797 -10.2381 -0.2713 18 6 2.5919 -9.9119 -0.8862 19 6 3.0786 -8.6074 -0.7958 20 6 3.1128 -11.1260 -1.5412 21 8 4.1521 -11.1864 -2.1671 22 8 2.2722 -12.1556 -1.3459 23 6 1.1416 -11.7005 -0.5535 24 1 -0.4850 0.8399 0.0004 25 1 3.1247 -3.7312 0.8895 26 1 3.1247 -3.7312 -0.8905 27 1 3.7992 -6.1850 0.0674 28 1 0.5937 -7.2413 1.0498 29 1 -0.2665 -9.5426 0.8911 30 1 4.0141 -8.3440 -1.2667 31 1 0.2160 -11.8273 -1.1151 32 1 1.0909 -12.2589 0.3812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809203725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -75.846740 kcal Electronic energy + Delta-G solvation = -19492.491952 eV Core-core repulsion = 16123.989139 eV Total energy + Delta-G solvation = -3368.502813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86049 -40.24514 -38.18717 -37.53993 -34.84133 -32.52367 -31.58549 -31.34786 -29.25366 -27.07906 -25.58806 -24.50518 -22.65960 -21.41738 -20.44298 -18.42535 -18.02252 -17.32630 -17.08844 -16.96056 -16.20268 -15.52478 -15.24079 -14.88669 -14.78694 -14.35789 -14.00182 -13.97482 -13.92099 -13.55728 -13.18893 -12.70510 -12.50829 -12.25298 -11.93253 -11.34132 -11.14554 -11.11036 -10.85397 -10.64332 -10.37262 -9.93850 -9.75193 -9.37545 -9.15545 -8.42669 -8.39377 -6.63097 -6.31253 -4.03564 0.29012 0.82626 2.18094 2.58740 2.71852 2.79374 3.16867 3.18297 3.24372 3.36638 3.40467 3.57387 3.78940 4.10562 4.37756 4.68054 4.74267 4.82585 4.90299 5.04549 5.07959 5.17263 5.40085 5.49007 5.63340 5.67591 5.78490 5.94273 5.97425 6.11922 6.31217 6.62183 7.14456 7.24818 7.50767 8.16963 8.25778 9.14482 10.76162 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.045653 B = 0.002738 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.178527 B =10222.440670 C =10671.451786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.155 4.155 11 C 0.535 3.465 12 O -0.495 6.495 13 N -0.680 5.680 14 C 0.154 3.846 15 C -0.081 4.081 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.180 4.180 19 C -0.065 4.065 20 C 0.525 3.475 21 O -0.454 6.454 22 O -0.321 6.321 23 C 0.095 3.905 24 H 0.270 0.730 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.414 0.586 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -19.883 2.124 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.367 6.367 13 N -0.327 5.327 14 C 0.059 3.941 15 C -0.101 4.101 16 C -0.096 4.096 17 C -0.127 4.127 18 C -0.182 4.182 19 C -0.086 4.086 20 C 0.367 3.633 21 O -0.340 6.340 22 O -0.236 6.236 23 C 0.021 3.979 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.250 0.750 28 H 0.175 0.825 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.036 -20.266 1.744 20.442 hybrid contribution 2.386 1.537 0.026 2.838 sum 4.422 -18.729 1.771 19.325 Atomic orbital electron populations 1.70001 1.05973 1.27648 1.46584 1.24997 0.95052 0.99114 0.94351 0.86144 0.79402 0.81400 0.78433 1.20200 1.20692 1.19641 1.22845 0.94939 0.91422 1.59378 0.90768 1.85405 1.04297 0.96439 1.96789 1.23557 1.07171 0.94226 1.05565 1.20616 0.86426 0.86309 0.74403 1.90697 1.15239 1.85104 1.45704 1.43723 1.11379 1.03316 1.74313 1.17659 0.95290 0.84629 0.96540 1.21710 0.95335 0.96304 0.96754 1.20192 0.99804 0.91113 0.98474 1.20758 0.95990 0.96083 0.99867 1.20448 0.98110 0.95099 1.04542 1.20531 1.00862 0.90490 0.96713 1.20461 0.82496 0.82645 0.77654 1.90891 1.20411 1.84408 1.38264 1.87228 1.33460 1.36056 1.66866 1.22382 0.88142 0.90747 0.96609 0.92057 0.88574 0.88575 0.74987 0.82492 0.84231 0.84273 0.86545 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.29 13.22 55.49 0.73 -24.56 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -14.64 9.50 30.94 0.29 -14.35 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.42 20.57 -107.50 -2.21 -3.63 16 10 C -0.15 -2.80 6.16 36.01 0.22 -2.58 16 11 C 0.53 8.78 7.69 -10.98 -0.08 8.70 16 12 O -0.50 -9.76 13.30 5.56 0.07 -9.69 16 13 N -0.68 -8.15 5.33 -9.89 -0.05 -8.20 16 14 C 0.15 1.83 6.29 -83.74 -0.53 1.30 16 15 C -0.08 -0.95 8.70 -39.26 -0.34 -1.29 16 16 C -0.08 -0.69 10.02 -39.77 -0.40 -1.09 16 17 C -0.13 -1.11 6.38 -104.21 -0.67 -1.77 16 18 C -0.18 -1.98 6.27 -105.09 -0.66 -2.63 16 19 C -0.07 -0.71 10.02 -38.97 -0.39 -1.10 16 20 C 0.53 6.48 8.58 34.48 0.30 6.78 16 21 O -0.45 -6.99 18.04 -18.92 -0.34 -7.33 16 22 O -0.32 -3.30 11.13 -39.19 -0.44 -3.73 16 23 C 0.10 0.60 7.93 36.07 0.29 0.89 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.10 1.57 8.14 -51.91 -0.42 1.15 16 26 H 0.10 1.61 8.14 -51.92 -0.42 1.18 16 27 H 0.41 3.57 8.82 -40.82 -0.36 3.21 16 28 H 0.16 2.09 6.22 -52.49 -0.33 1.76 16 29 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -34.51 305.33 -7.49 -42.00 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -2.77 Total: 0.04 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.06 Total: -5.20 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.68 Total: -32.76 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.70 Total: -20.75 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.51 -7.49 -42.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809203725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.850 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds