Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00319 * 3 2 1 5 5 H 1.48500 * 109.46815 * 30.00297 * 3 2 1 6 6 H 1.48493 * 109.46970 * 150.00253 * 3 2 1 7 7 C 1.38790 * 120.00480 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00425 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00008 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00304 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47351 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99646 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.39957 * 119.99906 * 184.61497 * 13 11 10 15 15 C 1.38996 * 119.91186 * 324.61853 * 14 13 11 16 16 C 1.38355 * 120.14476 * 180.30267 * 15 14 13 17 17 C 1.37613 * 120.04931 * 359.95439 * 16 15 14 18 18 C 1.39781 * 120.41486 * 0.04492 * 17 16 15 19 19 C 1.38591 * 119.91660 * 144.89376 * 14 13 11 20 20 C 1.47450 * 108.03757 * 180.02562 * 18 17 16 21 21 O 1.21475 * 124.89987 * 179.97438 * 20 18 17 22 22 O 1.34345 * 110.20789 * 359.97438 * 20 18 17 23 23 C 1.45378 * 109.01915 * 0.02562 * 22 20 18 24 24 H 0.96990 * 120.00584 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47031 * 59.99857 * 10 9 7 26 26 H 1.08999 * 109.47477 * 300.00380 * 10 9 7 27 27 H 0.97003 * 119.99681 * 4.60887 * 13 11 10 28 28 H 1.08002 * 119.93229 * 0.27899 * 15 14 13 29 29 H 1.08001 * 119.97731 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.13411 * 359.73932 * 19 14 13 31 31 H 1.09003 * 110.06747 * 119.24140 * 23 22 20 32 32 H 1.09000 * 110.06805 * 240.70352 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9877 -5.3027 -0.0012 12 8 0.7914 -5.5022 -0.0011 13 7 2.8445 -6.3430 -0.0008 14 6 2.3569 -7.6512 -0.0989 15 6 1.1529 -7.9895 0.5077 16 6 0.6695 -9.2828 0.4191 17 6 1.3797 -10.2381 -0.2713 18 6 2.5919 -9.9119 -0.8862 19 6 3.0786 -8.6074 -0.7958 20 6 3.1128 -11.1260 -1.5412 21 8 4.1521 -11.1864 -2.1671 22 8 2.2722 -12.1556 -1.3459 23 6 1.1416 -11.7005 -0.5535 24 1 -0.4850 0.8399 0.0004 25 1 3.1247 -3.7312 0.8895 26 1 3.1247 -3.7312 -0.8905 27 1 3.7992 -6.1850 0.0674 28 1 0.5937 -7.2413 1.0498 29 1 -0.2665 -9.5426 0.8911 30 1 4.0141 -8.3440 -1.2667 31 1 0.2160 -11.8273 -1.1151 32 1 1.0909 -12.2589 0.3812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809203725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -98.967491 kcal Electronic energy + Delta-G solvation = -19493.494543 eV Core-core repulsion = 16123.989139 eV Total energy + Delta-G solvation = -3369.505404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.68417 -41.36843 -39.20093 -38.48336 -35.91410 -34.59072 -32.52487 -32.26151 -30.45777 -27.94388 -27.60457 -25.35346 -23.64565 -22.28581 -21.50545 -19.95099 -19.23701 -18.31691 -18.16050 -17.85039 -17.31021 -16.88272 -16.64764 -16.16195 -16.01470 -15.72278 -15.04442 -14.86946 -14.75707 -14.70182 -14.49105 -14.10513 -13.63326 -13.28327 -13.15533 -12.90235 -12.79051 -12.62085 -12.17879 -11.75751 -11.55664 -11.31819 -11.14812 -11.03163 -10.30894 -10.23694 -9.33365 -8.67241 -8.35895 -6.13463 -0.57239 0.00478 1.19898 1.24068 1.42388 1.42823 1.50165 1.55616 1.90398 2.11032 2.25810 2.54137 2.70057 2.98988 3.08562 3.25965 3.64792 3.75573 3.96626 4.18782 4.25949 4.29172 4.36857 4.48388 4.51965 4.64463 4.82293 4.98527 5.10928 5.24287 5.42129 5.51649 5.71019 6.19107 6.22709 6.24900 6.98186 7.06408 8.73059 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.045653 B = 0.002738 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.178527 B =10222.440670 C =10671.451786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.141 6.141 10 C -0.132 4.132 11 C 0.540 3.460 12 O -0.534 6.534 13 N -0.659 5.659 14 C 0.133 3.867 15 C -0.093 4.093 16 C -0.070 4.070 17 C -0.105 4.105 18 C -0.200 4.200 19 C -0.061 4.061 20 C 0.527 3.473 21 O -0.497 6.497 22 O -0.327 6.327 23 C 0.092 3.908 24 H 0.271 0.729 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.430 0.570 28 H 0.138 0.862 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -21.125 2.572 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.086 5.914 10 C -0.283 4.283 11 C 0.327 3.673 12 O -0.410 6.410 13 N -0.306 5.306 14 C 0.038 3.962 15 C -0.113 4.113 16 C -0.088 4.088 17 C -0.106 4.106 18 C -0.202 4.202 19 C -0.082 4.082 20 C 0.371 3.629 21 O -0.386 6.386 22 O -0.242 6.242 23 C 0.020 3.980 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.270 0.730 28 H 0.156 0.844 29 H 0.191 0.809 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.843 -21.553 2.207 21.851 hybrid contribution 2.111 1.707 -0.081 2.716 sum 4.953 -19.846 2.125 20.565 Atomic orbital electron populations 1.70160 1.07887 1.28645 1.47974 1.26081 0.95938 1.03227 0.93766 0.84985 0.78268 0.76227 0.78719 1.19490 1.20388 1.18184 1.23208 0.95428 0.91999 1.58856 0.89792 1.85524 1.09832 0.98994 1.97083 1.23377 1.04085 0.93294 1.07500 1.20240 0.86174 0.86470 0.74391 1.90691 1.16857 1.85517 1.47918 1.43313 1.11684 1.02683 1.72968 1.17708 0.96037 0.84322 0.98133 1.21741 0.95268 0.97323 0.97006 1.20435 1.00721 0.89766 0.97922 1.21046 0.94438 0.97436 0.97707 1.20505 0.99345 0.94786 1.05593 1.20575 1.01040 0.90395 0.96189 1.20608 0.82112 0.83250 0.76904 1.90860 1.22321 1.85123 1.40329 1.87213 1.34120 1.35744 1.67142 1.22889 0.87740 0.89060 0.98333 0.91972 0.86369 0.86739 0.73020 0.84387 0.80936 0.83386 0.83365 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.27 13.22 21.65 0.29 -53.98 16 2 C 0.01 0.82 5.49 84.85 0.47 1.29 16 3 Si 1.00 42.33 29.55 68.60 2.03 44.36 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.55 -29.92 9.50 67.95 0.65 -29.28 16 8 H 0.08 4.25 7.80 -2.91 -0.02 4.22 16 9 S -0.14 -7.37 20.57 -56.49 -1.16 -8.53 16 10 C -0.13 -4.68 6.16 71.24 0.44 -4.24 16 11 C 0.54 17.58 7.69 87.66 0.67 18.25 16 12 O -0.53 -21.49 13.30 -3.03 -0.04 -21.53 16 13 N -0.66 -15.11 5.33 -303.59 -1.62 -16.73 16 14 C 0.13 3.02 6.29 38.11 0.24 3.26 16 15 C -0.09 -2.09 8.70 22.48 0.20 -1.90 16 16 C -0.07 -1.07 10.02 22.15 0.22 -0.84 16 17 C -0.10 -1.54 6.38 -19.60 -0.13 -1.66 16 18 C -0.20 -4.07 6.27 -20.17 -0.13 -4.20 16 19 C -0.06 -1.27 10.02 22.66 0.23 -1.05 16 20 C 0.53 12.42 8.58 70.25 0.60 13.03 16 21 O -0.50 -15.33 18.04 19.61 0.35 -14.97 16 22 O -0.33 -5.94 11.13 -52.89 -0.59 -6.53 16 23 C 0.09 0.78 7.93 71.28 0.56 1.35 16 24 H 0.27 15.04 8.31 -92.72 -0.77 14.27 16 25 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 26 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 27 H 0.43 6.70 8.82 -92.71 -0.82 5.88 16 28 H 0.14 3.71 6.22 -2.91 -0.02 3.69 16 29 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -78.21 305.33 3.65 -74.56 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.37 Total: 9.35 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.03 Total: -6.00 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.33 Total: -70.70 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.28 Total: -43.04 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.16 Total: -8.53 kcal Total: -78.21 3.65 -74.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809203725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.409 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds