Wall clock time and date at job start Tue Mar 31 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39647 * 120.14306 * 111.37150 * 3 2 1 5 5 C 1.37939 * 119.87019 * 180.02562 * 4 3 2 6 6 C 1.38355 * 120.16686 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.85481 * 179.97438 * 6 5 4 8 8 O 1.45195 * 109.46818 * 0.02562 * 7 6 5 9 9 C 1.34232 * 117.00092 * 180.02562 * 8 7 6 10 10 O 1.20827 * 119.99792 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00164 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.46822 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46822 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00200 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99725 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47160 * 59.99510 * 17 15 13 19 19 H 1.48496 * 109.46930 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46819 * 299.99825 * 17 15 13 21 21 C 1.38461 * 120.29459 * 359.97438 * 6 5 4 22 22 Cl 1.73599 * 119.93767 * 179.97438 * 21 6 5 23 23 C 1.38088 * 120.11775 * 0.23662 * 21 6 5 24 24 H 1.08003 * 120.06742 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.91329 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.46760 * 120.02194 * 7 6 5 27 27 H 1.08998 * 109.46892 * 240.02474 * 7 6 5 28 28 H 1.09001 * 109.46748 * 299.99879 * 11 9 8 29 29 H 1.08998 * 109.46972 * 60.00026 * 11 9 8 30 30 H 1.09001 * 109.47058 * 299.99864 * 12 11 9 31 31 H 1.08998 * 109.47165 * 60.00341 * 12 11 9 32 32 H 0.97002 * 119.99215 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.07966 * 179.72259 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.4410 -1.1246 5 6 4.6484 0.4388 -1.1187 6 6 5.3382 0.0010 -0.0021 7 6 6.8452 0.0009 -0.0035 8 8 7.3280 0.5009 -1.2783 9 6 8.6586 0.5647 -1.4435 10 8 9.3954 0.2147 -0.5522 11 6 9.2333 1.0727 -2.7406 12 6 10.7613 1.0435 -2.6674 13 6 11.3361 1.5510 -3.9648 14 1 10.6775 1.8627 -4.7620 15 6 12.7028 1.6163 -4.1345 16 7 13.5049 1.2363 -3.1640 17 14 13.4153 2.2461 -5.7424 18 1 12.9579 3.6397 -5.9744 19 1 14.8983 2.2165 -5.6720 20 1 12.9560 1.3819 -6.8594 21 6 4.6500 -0.4371 1.1167 22 17 5.5248 -0.9851 2.5124 23 6 3.2691 -0.4441 1.1222 24 1 2.7323 0.7820 -1.9976 25 1 5.1913 0.7796 -1.9878 26 1 7.2092 0.6418 0.7996 27 1 7.2086 -1.0152 0.1495 28 1 8.8963 0.4384 -3.5605 29 1 8.8976 2.0956 -2.9109 30 1 11.0980 1.6781 -1.8476 31 1 11.0974 0.0208 -2.4970 32 1 14.4664 1.2827 -3.2833 33 1 2.7330 -0.7901 1.9935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:18 Heat of formation + Delta-G solvation = -52.368098 kcal Electronic energy + Delta-G solvation = -19168.807784 eV Core-core repulsion = 15799.279375 eV Total energy + Delta-G solvation = -3369.528409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49605 -39.74073 -37.26639 -36.75452 -36.21219 -33.64539 -32.79196 -31.43227 -31.17596 -27.79629 -25.89342 -23.54212 -23.01638 -21.93763 -19.92759 -19.51397 -17.51296 -16.90180 -16.48964 -16.23867 -15.88951 -15.51948 -14.90140 -14.79908 -14.49543 -14.26664 -14.12059 -13.49088 -13.36203 -13.27835 -12.65311 -12.38225 -12.31155 -12.19373 -11.83300 -11.76087 -11.32148 -11.23107 -10.98083 -10.74188 -10.70398 -10.10715 -10.03874 -9.63493 -9.45313 -9.24164 -9.18772 -8.41415 -6.05356 -4.10643 0.12351 0.62396 1.56703 2.24402 2.37664 2.70259 2.80174 3.26975 3.30220 3.34885 3.35445 3.36972 4.20391 4.25979 4.40637 4.46689 4.72402 4.88090 5.11932 5.18055 5.27314 5.30183 5.37399 5.47375 5.67112 5.84367 6.03853 6.10095 6.11682 6.52191 6.81429 7.00599 7.61230 7.67532 7.93208 8.15209 8.32087 8.96200 9.53733 11.05523 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.002709 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.327006 B =10334.120468 C =11346.698035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.257 3.743 3 C -0.021 4.021 4 C -0.062 4.062 5 C -0.086 4.086 6 C -0.045 4.045 7 C 0.097 3.903 8 O -0.364 6.364 9 C 0.459 3.541 10 O -0.500 6.500 11 C -0.102 4.102 12 C 0.033 3.967 13 C -0.530 4.530 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.037 4.037 22 Cl -0.050 7.050 23 C -0.060 4.060 24 H 0.143 0.857 25 H 0.159 0.841 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.172 -2.951 7.539 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.059 4.059 3 C -0.025 4.025 4 C -0.083 4.083 5 C -0.104 4.104 6 C -0.047 4.047 7 C 0.023 3.977 8 O -0.283 6.283 9 C 0.302 3.698 10 O -0.386 6.386 11 C -0.140 4.140 12 C -0.004 4.004 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.063 4.063 22 Cl -0.020 7.020 23 C -0.081 4.081 24 H 0.161 0.839 25 H 0.176 0.824 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.447 -3.142 8.024 23.114 hybrid contribution 0.998 0.181 -0.467 1.116 sum -20.450 -2.960 7.557 22.001 Atomic orbital electron populations 1.81285 1.11901 1.08270 1.07104 1.25507 0.92396 0.93939 0.94060 1.15817 0.84538 1.05987 0.96146 1.21366 0.94204 0.95899 0.96812 1.21095 0.93074 0.97699 0.98487 1.19802 0.95236 0.96797 0.92827 1.21676 0.88837 1.01374 0.85764 1.86490 1.26915 1.77858 1.37008 1.24838 0.78812 0.74677 0.91455 1.90664 1.59838 1.44445 1.43610 1.21795 1.00835 1.01875 0.89451 1.19026 0.84917 0.98768 0.97736 1.21100 0.91691 1.44130 0.99918 0.92332 1.25021 0.97222 0.95320 0.96733 1.69979 1.03632 1.47000 1.32102 0.86601 0.77937 0.79425 0.83689 1.20145 1.21261 1.20153 1.20403 0.91994 1.04032 0.89921 1.98419 1.75800 1.87953 1.39869 1.20935 0.91645 0.97590 0.97954 0.83895 0.82379 0.88922 0.88920 0.88787 0.88789 0.95552 0.95556 0.92745 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.47 18.54 41.83 0.78 -3.70 16 2 C 0.26 2.18 15.33 -22.47 -0.34 1.84 16 3 C -0.02 -0.15 5.73 -106.94 -0.61 -0.76 16 4 C -0.06 -0.39 9.76 -39.17 -0.38 -0.77 16 5 C -0.09 -0.66 9.36 -39.65 -0.37 -1.03 16 6 C -0.04 -0.41 5.89 -104.49 -0.62 -1.02 16 7 C 0.10 1.12 4.81 36.01 0.17 1.29 16 8 O -0.36 -4.97 8.67 -39.26 -0.34 -5.31 16 9 C 0.46 8.07 7.96 36.01 0.29 8.36 16 10 O -0.50 -10.50 15.73 -18.75 -0.29 -10.79 16 11 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 12 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 13 C -0.53 -14.26 9.11 -34.44 -0.31 -14.58 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.04 -0.30 6.31 -39.55 -0.25 -0.55 16 22 Cl -0.05 -0.43 27.96 -51.86 -1.45 -1.88 16 23 C -0.06 -0.41 9.54 -39.13 -0.37 -0.78 16 24 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 25 H 0.16 1.18 6.97 -52.49 -0.37 0.81 16 26 H 0.09 1.08 8.13 -51.93 -0.42 0.66 16 27 H 0.09 1.08 8.13 -51.93 -0.42 0.66 16 28 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 30 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -31.59 322.18 -7.20 -38.79 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -3.28 Total: -4.40 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.18 Total: -7.81 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 1.51 Total: -29.32 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.64 Total: -16.10 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.45 Total: -1.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.59 -7.20 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.581 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds