Wall clock time and date at job start Tue Mar 31 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39647 * 120.14306 * 111.37150 * 3 2 1 5 5 C 1.37939 * 119.87019 * 180.02562 * 4 3 2 6 6 C 1.38355 * 120.16686 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.85481 * 179.97438 * 6 5 4 8 8 O 1.45195 * 109.46818 * 0.02562 * 7 6 5 9 9 C 1.34232 * 117.00092 * 180.02562 * 8 7 6 10 10 O 1.20827 * 119.99792 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00164 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.46822 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46822 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00200 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99725 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47160 * 59.99510 * 17 15 13 19 19 H 1.48496 * 109.46930 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46819 * 299.99825 * 17 15 13 21 21 C 1.38461 * 120.29459 * 359.97438 * 6 5 4 22 22 Cl 1.73599 * 119.93767 * 179.97438 * 21 6 5 23 23 C 1.38088 * 120.11775 * 0.23662 * 21 6 5 24 24 H 1.08003 * 120.06742 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.91329 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.46760 * 120.02194 * 7 6 5 27 27 H 1.08998 * 109.46892 * 240.02474 * 7 6 5 28 28 H 1.09001 * 109.46748 * 299.99879 * 11 9 8 29 29 H 1.08998 * 109.46972 * 60.00026 * 11 9 8 30 30 H 1.09001 * 109.47058 * 299.99864 * 12 11 9 31 31 H 1.08998 * 109.47165 * 60.00341 * 12 11 9 32 32 H 0.97002 * 119.99215 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.07966 * 179.72259 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.4410 -1.1246 5 6 4.6484 0.4388 -1.1187 6 6 5.3382 0.0010 -0.0021 7 6 6.8452 0.0009 -0.0035 8 8 7.3280 0.5009 -1.2783 9 6 8.6586 0.5647 -1.4435 10 8 9.3954 0.2147 -0.5522 11 6 9.2333 1.0727 -2.7406 12 6 10.7613 1.0435 -2.6674 13 6 11.3361 1.5510 -3.9648 14 1 10.6775 1.8627 -4.7620 15 6 12.7028 1.6163 -4.1345 16 7 13.5049 1.2363 -3.1640 17 14 13.4153 2.2461 -5.7424 18 1 12.9579 3.6397 -5.9744 19 1 14.8983 2.2165 -5.6720 20 1 12.9560 1.3819 -6.8594 21 6 4.6500 -0.4371 1.1167 22 17 5.5248 -0.9851 2.5124 23 6 3.2691 -0.4441 1.1222 24 1 2.7323 0.7820 -1.9976 25 1 5.1913 0.7796 -1.9878 26 1 7.2092 0.6418 0.7996 27 1 7.2086 -1.0152 0.1495 28 1 8.8963 0.4384 -3.5605 29 1 8.8976 2.0956 -2.9109 30 1 11.0980 1.6781 -1.8476 31 1 11.0974 0.0208 -2.4970 32 1 14.4664 1.2827 -3.2833 33 1 2.7330 -0.7901 1.9935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:18 Heat of formation + Delta-G solvation = -68.744244 kcal Electronic energy + Delta-G solvation = -19169.517907 eV Core-core repulsion = 15799.279375 eV Total energy + Delta-G solvation = -3370.238532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60785 -40.63705 -38.05419 -37.68408 -37.20251 -35.60451 -33.64555 -32.97784 -32.01656 -28.88555 -27.55881 -24.57323 -23.85680 -23.26965 -21.38328 -20.16851 -19.04858 -18.20591 -17.72847 -17.59021 -16.75774 -16.44094 -16.12943 -15.99638 -15.74863 -15.13863 -14.89333 -14.44474 -14.37925 -14.19418 -14.11366 -13.74897 -13.69789 -13.16754 -12.92341 -12.76417 -12.51514 -12.49748 -12.38690 -11.97475 -11.96850 -11.88091 -11.71185 -11.40879 -11.24468 -10.53195 -10.05797 -9.84874 -8.16494 -6.29712 -0.50988 0.05335 0.92531 1.28108 1.45976 1.50069 1.55079 1.57583 1.62559 1.71829 2.46016 2.65372 2.68630 3.17731 3.40069 3.65788 3.89547 4.02115 4.04266 4.16268 4.27974 4.41498 4.52959 4.53550 4.76134 4.81972 4.94921 5.08512 5.19869 5.41081 5.52235 5.53418 5.61190 5.85272 6.17144 6.34606 6.81534 6.90623 7.40611 8.95779 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.002709 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.327006 B =10334.120468 C =11346.698035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.282 3.718 3 C -0.019 4.019 4 C -0.046 4.046 5 C -0.088 4.088 6 C -0.053 4.053 7 C 0.095 3.905 8 O -0.345 6.345 9 C 0.469 3.531 10 O -0.542 6.542 11 C -0.093 4.093 12 C 0.036 3.964 13 C -0.542 4.542 14 H 0.079 0.921 15 C -0.005 4.005 16 N -0.936 5.936 17 Si 0.971 3.029 18 H -0.262 1.262 19 H -0.291 1.291 20 H -0.263 1.263 21 C -0.041 4.041 22 Cl -0.058 7.058 23 C -0.051 4.051 24 H 0.169 0.831 25 H 0.164 0.836 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.120 0.880 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.263 0.737 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.049 -2.294 5.862 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.033 4.033 3 C -0.023 4.023 4 C -0.066 4.066 5 C -0.106 4.106 6 C -0.055 4.055 7 C 0.022 3.978 8 O -0.262 6.262 9 C 0.314 3.686 10 O -0.431 6.431 11 C -0.130 4.130 12 C -0.001 4.001 13 C -0.580 4.580 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.576 5.576 17 Si 0.796 3.204 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.187 1.187 21 C -0.068 4.068 22 Cl -0.029 7.029 23 C -0.072 4.072 24 H 0.186 0.814 25 H 0.181 0.819 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -23.375 -2.480 6.335 24.345 hybrid contribution 1.503 -0.047 0.117 1.508 sum -21.872 -2.527 6.452 22.944 Atomic orbital electron populations 1.81324 1.13158 1.09813 1.08494 1.25546 0.92321 0.92642 0.92776 1.15809 0.83686 1.06274 0.96517 1.21571 0.93576 0.94236 0.97211 1.21162 0.93660 0.97701 0.98071 1.19652 0.93515 0.98344 0.93985 1.21809 0.90719 1.00963 0.84320 1.86433 1.24315 1.77255 1.38194 1.24512 0.79792 0.73734 0.90537 1.90662 1.61179 1.46410 1.44872 1.21526 0.96343 1.04216 0.90894 1.18812 0.89688 0.95549 0.96066 1.21634 0.92284 1.43242 1.00810 0.90244 1.26082 0.97985 0.95585 1.00608 1.70153 1.03885 1.48823 1.34767 0.85404 0.76643 0.79415 0.78987 1.18710 1.21647 1.18722 1.20383 0.92372 1.04577 0.89464 1.98420 1.76082 1.88093 1.40310 1.21066 0.91025 0.96581 0.98482 0.81361 0.81857 0.89381 0.89378 0.86189 0.86195 0.99221 0.99229 0.92860 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.17 18.54 19.00 0.35 -8.81 16 2 C 0.28 4.16 15.33 88.33 1.35 5.51 16 3 C -0.02 -0.21 5.73 -21.36 -0.12 -0.34 16 4 C -0.05 -0.42 9.76 22.54 0.22 -0.20 16 5 C -0.09 -1.11 9.36 22.23 0.21 -0.91 16 6 C -0.05 -0.87 5.89 -19.78 -0.12 -0.99 16 7 C 0.10 2.13 4.81 71.24 0.34 2.47 16 8 O -0.35 -8.92 8.67 -51.44 -0.45 -9.36 16 9 C 0.47 16.33 7.96 71.24 0.57 16.90 16 10 O -0.54 -23.43 15.73 21.96 0.35 -23.08 16 11 C -0.09 -3.34 5.75 29.85 0.17 -3.16 16 12 C 0.04 1.86 4.26 29.85 0.13 1.98 16 13 C -0.54 -28.98 9.11 25.60 0.23 -28.75 16 14 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 16 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 17 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 21 C -0.04 -0.60 6.31 22.29 0.14 -0.46 16 22 Cl -0.06 -0.97 27.96 -2.72 -0.08 -1.04 16 23 C -0.05 -0.57 9.54 22.56 0.22 -0.36 16 24 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 25 H 0.16 1.93 6.97 -2.91 -0.02 1.90 16 26 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 27 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 28 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 29 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 30 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 31 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -70.20 322.18 7.43 -62.77 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: 1.14 Total: -0.07 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 3.80 Total: -8.11 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: 0.64 Total: -65.59 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.10 Total: -32.45 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.04 kcal Total: -70.20 7.43 -62.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.975 kcal (2) G-P(sol) polarization free energy of solvation -70.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds