Wall clock time and date at job start Tue Mar 31 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 115.54848 * 2 1 4 4 C 1.50704 * 109.46644 * 294.36448 * 3 2 1 5 5 O 1.21278 * 120.00336 * 359.62536 * 4 3 2 6 6 N 1.34782 * 119.99573 * 179.90409 * 4 3 2 7 7 C 1.46498 * 119.99842 * 179.72071 * 6 4 3 8 8 C 1.52999 * 109.47295 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47349 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47405 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99931 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00121 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00341 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47318 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47409 * 119.99842 * 14 12 10 17 17 H 1.48505 * 109.47408 * 240.00271 * 14 12 10 18 18 C 1.52998 * 117.50282 * 214.32240 * 2 1 3 19 19 C 1.52999 * 117.49813 * 145.66275 * 2 1 3 20 20 Cl 1.80302 * 117.49726 * 215.00941 * 19 2 1 21 21 Cl 1.80302 * 117.49914 * 0.02664 * 19 2 1 22 22 H 1.09001 * 109.46796 * 54.33743 * 1 2 3 23 23 H 1.09000 * 109.46753 * 174.32739 * 1 2 3 24 24 H 1.08994 * 109.47807 * 294.32949 * 1 2 3 25 25 H 1.08994 * 109.47630 * 174.36399 * 3 2 1 26 26 H 1.08999 * 109.47343 * 54.35941 * 3 2 1 27 27 H 0.96999 * 119.99890 * 359.72471 * 6 4 3 28 28 H 1.09000 * 109.47173 * 300.00051 * 7 6 4 29 29 H 1.08995 * 109.47084 * 59.99963 * 7 6 4 30 30 H 1.09000 * 109.46906 * 300.00036 * 8 7 6 31 31 H 1.09002 * 109.47328 * 60.00255 * 8 7 6 32 32 H 1.09000 * 109.47092 * 299.99856 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99735 * 9 8 7 34 34 H 0.96997 * 120.00416 * 180.02562 * 13 12 10 35 35 H 1.08997 * 117.49750 * 359.97438 * 18 2 1 36 36 H 1.08999 * 117.49484 * 144.98034 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8776 2.0863 -1.2943 5 8 1.2003 1.5366 -2.1369 6 7 2.3558 3.3265 -1.5179 7 6 2.0574 4.0103 -2.7786 8 6 2.7146 5.3919 -2.7774 9 6 2.4025 6.1064 -4.0938 10 6 3.0493 7.4675 -4.0924 11 1 3.6251 7.7908 -3.2378 12 6 2.9051 8.3004 -5.1816 13 7 2.2036 7.9070 -6.2220 14 14 3.7075 9.9873 -5.1801 15 1 4.4359 10.1879 -3.9016 16 1 4.6615 10.0828 -6.3140 17 1 2.6625 11.0328 -5.3230 18 6 2.2366 -1.1208 -0.7652 19 6 2.2364 -1.1206 0.7655 20 17 3.7828 -0.7134 1.5985 21 17 1.2022 -2.3406 1.5980 22 1 -0.3633 0.5992 -0.8350 23 1 -0.3633 -1.0227 -0.1016 24 1 -0.3634 0.4233 0.9363 25 1 3.2692 1.2672 0.1009 26 1 1.8063 1.9665 0.8351 27 1 2.8976 3.7661 -0.8441 28 1 2.4466 3.4240 -3.6110 29 1 0.9784 4.1210 -2.8854 30 1 2.3258 5.9785 -1.9451 31 1 3.7937 5.2809 -2.6710 32 1 2.7910 5.5200 -4.9265 33 1 1.3234 6.2174 -4.1999 34 1 2.1024 8.4928 -6.9885 35 1 1.6114 -1.8584 -1.2683 36 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823109591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:14 Heat of formation + Delta-G solvation = -49.119131 kcal Electronic energy + Delta-G solvation = -18514.686677 eV Core-core repulsion = 15278.699398 eV Total energy + Delta-G solvation = -3235.987278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11930 -38.34464 -36.36376 -36.10523 -35.34527 -33.36360 -31.46725 -29.88588 -28.46071 -26.45496 -23.21514 -22.66441 -20.87858 -20.46862 -19.28308 -17.05983 -16.66213 -16.41295 -15.85514 -15.34396 -15.03058 -14.46069 -14.26037 -14.05003 -13.47293 -13.14190 -13.06383 -12.44212 -12.32249 -12.20436 -11.95135 -11.88241 -11.80137 -11.61383 -11.51397 -11.05739 -10.94423 -10.77734 -10.59738 -10.40623 -10.16060 -9.91083 -9.80789 -9.38319 -9.13234 -8.83655 -8.40588 -6.04938 -4.08099 0.82400 1.84525 2.68505 2.73822 3.27858 3.35315 3.37552 3.40389 3.86003 3.97047 4.35087 4.41850 4.61646 4.93214 5.20140 5.22033 5.28869 5.31087 5.44813 5.57732 5.64123 5.71150 5.72992 6.04427 6.11415 6.42992 6.55204 6.78090 6.96094 7.60181 7.62946 7.72181 7.93728 8.30053 8.35545 8.98864 9.56442 11.06399 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.040988 B = 0.002421 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.964515 B =11564.736244 C =11985.421221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 C -0.117 4.117 4 C 0.512 3.488 5 O -0.537 6.537 6 N -0.726 5.726 7 C 0.117 3.883 8 C -0.121 4.121 9 C 0.023 3.977 10 C -0.522 4.522 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.126 4.126 19 C -0.001 4.001 20 Cl -0.098 7.098 21 Cl -0.095 7.095 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.399 0.601 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.122 0.878 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -19.124 16.501 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.062 4.062 3 C -0.157 4.157 4 C 0.297 3.703 5 O -0.414 6.414 6 N -0.377 5.377 7 C -0.006 4.006 8 C -0.159 4.159 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.163 4.163 19 C -0.052 4.052 20 Cl -0.071 7.071 21 Cl -0.068 7.068 22 H 0.109 0.891 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.232 0.768 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.671 -19.522 15.842 25.151 hybrid contribution 0.861 1.085 0.459 1.459 sum 0.190 -18.438 16.302 24.612 Atomic orbital electron populations 1.21530 0.89477 1.03522 1.03590 1.21930 0.96881 0.89815 0.97537 1.21367 1.02760 0.93865 0.97732 1.20268 0.80001 0.81729 0.88293 1.90695 1.38431 1.65696 1.46562 1.46220 1.53943 1.16537 1.20951 1.21649 1.00705 0.93963 0.84253 1.21890 0.99329 0.92567 1.02125 1.19031 0.97297 0.94698 0.90386 1.21237 1.32339 1.00382 1.02092 0.92596 1.25030 0.95354 0.98495 0.95600 1.69967 1.40315 1.36826 1.06169 0.86530 0.79209 0.84222 0.77996 1.19753 1.20979 1.20983 1.24047 1.03792 1.00349 0.88160 1.27272 0.87375 0.98497 0.92092 1.98743 1.33614 1.93361 1.81333 1.98739 1.68188 1.58551 1.81321 0.89110 0.91571 0.91610 0.87944 0.87596 0.76753 0.91751 0.91723 0.92716 0.92726 0.96290 0.96283 0.92952 0.85963 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.92 37.16 0.33 -0.81 16 2 C -0.06 -0.54 1.61 -154.51 -0.25 -0.79 16 3 C -0.12 -1.05 5.23 -27.88 -0.15 -1.19 16 4 C 0.51 6.46 7.67 -10.98 -0.08 6.38 16 5 O -0.54 -8.59 14.42 5.56 0.08 -8.51 16 6 N -0.73 -9.30 5.56 -60.30 -0.33 -9.63 16 7 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 8 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 14 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C -0.13 -1.08 9.59 -26.70 -0.26 -1.34 16 19 C 0.00 -0.01 3.61 -26.70 -0.10 -0.10 16 20 Cl -0.10 -0.86 27.55 -51.86 -1.43 -2.29 16 21 Cl -0.10 -0.84 27.82 -51.86 -1.44 -2.29 16 22 H 0.09 1.01 6.46 -51.93 -0.34 0.68 16 23 H 0.07 0.56 7.27 -51.93 -0.38 0.18 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.10 0.81 6.78 -51.93 -0.35 0.46 16 26 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -30.78 333.05 -8.78 -39.57 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.18 Total: -1.19 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.21 Total: -11.10 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.40 Total: -35.44 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -2.87 Total: -4.57 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.78 -8.78 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823109591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.550 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds