Wall clock time and date at job start Tue Mar 31 2020 07:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 115.54848 * 2 1 4 4 C 1.50704 * 109.46644 * 294.36448 * 3 2 1 5 5 O 1.21278 * 120.00336 * 359.62536 * 4 3 2 6 6 N 1.34782 * 119.99573 * 179.90409 * 4 3 2 7 7 C 1.46498 * 119.99842 * 179.72071 * 6 4 3 8 8 C 1.52999 * 109.47295 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47349 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47405 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99931 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00121 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00341 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99909 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47318 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47409 * 119.99842 * 14 12 10 17 17 H 1.48505 * 109.47408 * 240.00271 * 14 12 10 18 18 C 1.52998 * 117.50282 * 214.32240 * 2 1 3 19 19 C 1.52999 * 117.49813 * 145.66275 * 2 1 3 20 20 Cl 1.80302 * 117.49726 * 215.00941 * 19 2 1 21 21 Cl 1.80302 * 117.49914 * 0.02664 * 19 2 1 22 22 H 1.09001 * 109.46796 * 54.33743 * 1 2 3 23 23 H 1.09000 * 109.46753 * 174.32739 * 1 2 3 24 24 H 1.08994 * 109.47807 * 294.32949 * 1 2 3 25 25 H 1.08994 * 109.47630 * 174.36399 * 3 2 1 26 26 H 1.08999 * 109.47343 * 54.35941 * 3 2 1 27 27 H 0.96999 * 119.99890 * 359.72471 * 6 4 3 28 28 H 1.09000 * 109.47173 * 300.00051 * 7 6 4 29 29 H 1.08995 * 109.47084 * 59.99963 * 7 6 4 30 30 H 1.09000 * 109.46906 * 300.00036 * 8 7 6 31 31 H 1.09002 * 109.47328 * 60.00255 * 8 7 6 32 32 H 1.09000 * 109.47092 * 299.99856 * 9 8 7 33 33 H 1.08995 * 109.47111 * 59.99735 * 9 8 7 34 34 H 0.96997 * 120.00416 * 180.02562 * 13 12 10 35 35 H 1.08997 * 117.49750 * 359.97438 * 18 2 1 36 36 H 1.08999 * 117.49484 * 144.98034 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8776 2.0863 -1.2943 5 8 1.2003 1.5366 -2.1369 6 7 2.3558 3.3265 -1.5179 7 6 2.0574 4.0103 -2.7786 8 6 2.7146 5.3919 -2.7774 9 6 2.4025 6.1064 -4.0938 10 6 3.0493 7.4675 -4.0924 11 1 3.6251 7.7908 -3.2378 12 6 2.9051 8.3004 -5.1816 13 7 2.2036 7.9070 -6.2220 14 14 3.7075 9.9873 -5.1801 15 1 4.4359 10.1879 -3.9016 16 1 4.6615 10.0828 -6.3140 17 1 2.6625 11.0328 -5.3230 18 6 2.2366 -1.1208 -0.7652 19 6 2.2364 -1.1206 0.7655 20 17 3.7828 -0.7134 1.5985 21 17 1.2022 -2.3406 1.5980 22 1 -0.3633 0.5992 -0.8350 23 1 -0.3633 -1.0227 -0.1016 24 1 -0.3634 0.4233 0.9363 25 1 3.2692 1.2672 0.1009 26 1 1.8063 1.9665 0.8351 27 1 2.8976 3.7661 -0.8441 28 1 2.4466 3.4240 -3.6110 29 1 0.9784 4.1210 -2.8854 30 1 2.3258 5.9785 -1.9451 31 1 3.7937 5.2809 -2.6710 32 1 2.7910 5.5200 -4.9265 33 1 1.3234 6.2174 -4.1999 34 1 2.1024 8.4928 -6.9885 35 1 1.6114 -1.8584 -1.2683 36 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823109591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:13 Heat of formation + Delta-G solvation = -67.093685 kcal Electronic energy + Delta-G solvation = -18515.466112 eV Core-core repulsion = 15278.699398 eV Total energy + Delta-G solvation = -3236.766714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07173 -39.19582 -37.05107 -37.03491 -36.57189 -35.15919 -33.11815 -30.85677 -29.33734 -28.09011 -24.93712 -23.38276 -22.27979 -21.73806 -20.15560 -18.54426 -17.97639 -17.41305 -16.89598 -16.60513 -16.38169 -15.98433 -15.46625 -15.01550 -14.34652 -14.25606 -13.94781 -13.90796 -13.72608 -13.50806 -13.13795 -12.85356 -12.69944 -12.59164 -12.56220 -12.51393 -12.32527 -12.20727 -11.75749 -11.65478 -11.56095 -11.21222 -11.09563 -10.94958 -10.55833 -10.52042 -10.02543 -8.19482 -6.30682 0.13272 1.15896 1.41931 1.42312 1.55225 1.68071 1.94381 2.39987 2.48018 3.12309 3.14577 3.28816 3.60211 3.91030 4.03127 4.24412 4.25216 4.52835 4.56400 4.58276 4.64216 4.76069 4.88596 4.92704 4.97418 5.05775 5.18924 5.29530 5.48436 5.55872 5.72353 5.85327 6.23051 6.62540 6.87560 7.31004 7.39164 8.92817 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.040988 B = 0.002421 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.964515 B =11564.736244 C =11985.421221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.107 4.107 4 C 0.512 3.488 5 O -0.572 6.572 6 N -0.717 5.717 7 C 0.132 3.868 8 C -0.103 4.103 9 C 0.023 3.977 10 C -0.539 4.539 11 H 0.066 0.934 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.258 1.258 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.130 4.130 19 C 0.007 3.993 20 Cl -0.096 7.096 21 Cl -0.096 7.096 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.415 0.585 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.067 0.933 32 H -0.008 1.008 33 H -0.008 1.008 34 H 0.263 0.737 35 H 0.126 0.874 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -18.883 18.493 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.070 4.070 3 C -0.147 4.147 4 C 0.299 3.701 5 O -0.452 6.452 6 N -0.370 5.370 7 C 0.007 3.993 8 C -0.140 4.140 9 C -0.015 4.015 10 C -0.577 4.577 11 H 0.084 0.916 12 C -0.201 4.201 13 N -0.576 5.576 14 Si 0.790 3.210 15 H -0.182 1.182 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.168 4.168 19 C -0.044 4.044 20 Cl -0.069 7.069 21 Cl -0.069 7.069 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.252 0.748 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.496 -19.284 17.879 26.302 hybrid contribution 0.475 0.957 -0.167 1.081 sum 0.971 -18.328 17.712 25.506 Atomic orbital electron populations 1.21469 0.89701 1.03420 1.03184 1.21965 0.96833 0.90071 0.98108 1.21353 1.03760 0.93578 0.95964 1.20882 0.78874 0.81215 0.89093 1.90692 1.39942 1.66445 1.48096 1.46000 1.54290 1.16733 1.19950 1.21183 0.99381 0.92944 0.85745 1.21594 1.00297 0.93186 0.98964 1.18949 0.95205 0.94486 0.92844 1.21720 1.32220 1.01414 1.02372 0.91575 1.26012 0.95954 1.02932 0.95233 1.70109 1.41920 1.38553 1.07010 0.85385 0.78198 0.78830 0.78544 1.18194 1.20621 1.20618 1.24141 1.03999 1.00341 0.88273 1.27179 0.87189 0.98025 0.92056 1.98746 1.33493 1.93329 1.81312 1.98743 1.68263 1.58585 1.81336 0.91293 0.91201 0.90535 0.86428 0.85224 0.74808 0.93277 0.93229 0.91417 0.91452 0.98998 0.98981 0.92825 0.85552 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 8.92 71.98 0.64 -1.44 16 2 C -0.07 -1.12 1.61 -52.18 -0.08 -1.21 16 3 C -0.11 -1.66 5.23 29.85 0.16 -1.50 16 4 C 0.51 12.24 7.67 87.66 0.67 12.91 16 5 O -0.57 -18.20 14.42 -3.02 -0.04 -18.25 16 6 N -0.72 -17.24 5.56 -463.06 -2.57 -19.81 16 7 C 0.13 4.33 5.67 86.38 0.49 4.82 16 8 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 11 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 12 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 13 N -0.94 -56.66 13.29 21.45 0.28 -56.38 16 14 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 15 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 C -0.13 -2.06 9.59 30.62 0.29 -1.77 16 19 C 0.01 0.11 3.61 30.62 0.11 0.22 16 20 Cl -0.10 -1.48 27.55 -2.72 -0.07 -1.55 16 21 Cl -0.10 -1.56 27.82 -2.72 -0.08 -1.63 16 22 H 0.07 1.53 6.46 -2.39 -0.02 1.51 16 23 H 0.07 1.12 7.27 -2.39 -0.02 1.11 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.12 1.52 6.78 -2.39 -0.02 1.50 16 26 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.42 7.28 8.47 -92.71 -0.79 6.49 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.72 333.05 3.13 -63.59 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.30 Total: 8.11 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 3.29 Total: -19.44 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.29 Total: -76.19 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.25 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.15 Total: -3.19 kcal Total: -66.72 3.13 -63.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823109591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.507 kcal (2) G-P(sol) polarization free energy of solvation -66.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds