Wall clock time and date at job start Tue Mar 31 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46935 * 251.10045 * 3 2 1 5 5 C 1.37102 * 119.99802 * 263.95531 * 4 3 2 6 6 H 1.08002 * 119.99899 * 200.21406 * 5 4 3 7 7 C 1.38947 * 120.00107 * 20.21478 * 5 4 3 8 8 N 1.31409 * 120.00143 * 21.43652 * 7 5 4 9 9 Si 1.86806 * 119.99982 * 201.43477 * 7 5 4 10 10 H 1.48499 * 109.46942 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47178 * 120.00162 * 9 7 5 12 12 H 1.48500 * 109.47012 * 240.00040 * 9 7 5 13 13 C 1.34769 * 120.00022 * 83.95622 * 4 3 2 14 14 O 1.21292 * 120.00253 * 179.97438 * 13 4 3 15 15 C 1.50700 * 119.99878 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.46875 * 180.02562 * 15 13 4 17 17 C 1.50700 * 109.46875 * 180.02562 * 16 15 13 18 18 C 1.38610 * 120.42495 * 99.97856 * 17 16 15 19 19 C 1.38673 * 118.43783 * 180.02562 * 18 17 16 20 20 C 1.38190 * 119.19018 * 0.02562 * 19 18 17 21 21 N 1.31875 * 120.78128 * 359.97438 * 20 19 18 22 22 C 1.31984 * 121.70927 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 119.63527 * 180.02562 * 22 21 20 24 24 H 1.09006 * 109.46743 * 131.10590 * 3 2 1 25 25 H 1.08997 * 109.47625 * 11.10461 * 3 2 1 26 26 H 0.97005 * 120.00322 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47067 * 60.00058 * 15 13 4 28 28 H 1.08999 * 109.47155 * 299.99993 * 15 13 4 29 29 H 1.09000 * 109.47368 * 60.00069 * 16 15 13 30 30 H 1.08999 * 109.47081 * 299.99864 * 16 15 13 31 31 H 1.08001 * 120.78296 * 0.03598 * 18 17 16 32 32 H 1.07994 * 120.40474 * 180.02562 * 19 18 17 33 33 H 1.08005 * 119.60885 * 180.26345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.4483 1.3068 5 6 3.4418 1.7614 1.4963 6 1 4.0909 2.0361 2.3146 7 6 2.9572 2.7386 0.6357 8 7 1.8746 2.5113 -0.0736 9 14 3.8446 4.3757 0.4869 10 1 5.0279 4.3806 1.3841 11 1 4.2873 4.5730 -0.9167 12 1 2.9242 5.4747 0.8748 13 6 3.2052 -0.4307 2.3225 14 8 3.6097 -0.0602 3.4043 15 6 2.8246 -1.8739 2.1143 16 6 3.0404 -2.6509 3.4145 17 6 2.6604 -4.0943 3.2061 18 6 3.6367 -5.0512 2.9772 19 6 3.2408 -6.3670 2.7903 20 6 1.8955 -6.6792 2.8374 21 7 0.9928 -5.7433 3.0574 22 6 1.3325 -4.4811 3.2406 23 17 0.0995 -3.2932 3.5269 24 1 2.9710 0.6765 -0.7744 25 1 2.9718 -1.0075 -0.1979 26 1 1.5360 3.1937 -0.6742 27 1 3.4443 -2.3031 1.3269 28 1 1.7755 -1.9349 1.8249 29 1 2.4205 -2.2216 4.2016 30 1 4.0894 -2.5900 3.7044 31 1 4.6813 -4.7785 2.9454 32 1 3.9749 -7.1383 2.6102 33 1 1.5799 -7.7025 2.6970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824991358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:26 Heat of formation + Delta-G solvation = 5.644278 kcal Electronic energy + Delta-G solvation = -20502.042530 eV Core-core repulsion = 17167.322478 eV Total energy + Delta-G solvation = -3334.720053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34526 -40.53307 -37.67215 -37.59734 -36.24365 -35.47868 -33.75612 -32.90257 -30.95977 -29.13062 -27.24893 -25.41297 -24.57412 -22.74413 -20.68415 -19.71590 -18.42164 -18.18601 -17.99319 -17.72621 -16.64161 -16.02917 -15.95334 -15.83806 -15.47811 -14.92305 -14.69842 -14.38771 -14.24545 -14.01323 -13.78219 -13.36804 -13.19196 -13.09391 -12.88549 -12.82833 -12.65378 -12.33941 -12.25762 -12.12855 -12.05158 -11.85164 -11.11345 -10.79990 -10.58031 -10.39206 -9.89323 -9.81211 -8.38691 -5.95870 -0.06290 0.21923 0.88697 1.39225 1.49234 1.61748 1.83250 2.09006 2.27257 2.37315 2.66123 3.01800 3.10290 3.49440 3.60913 3.74886 3.83662 4.02511 4.07024 4.22431 4.25389 4.42531 4.52083 4.63392 4.75722 4.87219 4.93119 5.11218 5.20363 5.27921 5.50677 5.61965 6.07049 6.41494 6.75016 7.02789 7.14452 7.37726 7.94809 8.65518 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.004339 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.648178 B = 6451.303667 C = 6876.655895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.255 3.745 3 C 0.222 3.778 4 N -0.457 5.457 5 C -0.339 4.339 6 H 0.084 0.916 7 C 0.004 3.996 8 N -0.895 5.895 9 Si 0.986 3.014 10 H -0.268 1.268 11 H -0.263 1.263 12 H -0.292 1.292 13 C 0.454 3.546 14 O -0.613 6.613 15 C -0.120 4.120 16 C -0.054 4.054 17 C -0.118 4.118 18 C -0.057 4.057 19 C -0.149 4.149 20 C 0.102 3.898 21 N -0.510 5.510 22 C 0.149 3.851 23 Cl -0.055 7.055 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.273 0.727 27 H 0.123 0.877 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.186 0.814 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -18.061 -0.383 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.063 4.063 3 C 0.096 3.904 4 N -0.177 5.177 5 C -0.466 4.466 6 H 0.101 0.899 7 C -0.198 4.198 8 N -0.533 5.533 9 Si 0.810 3.190 10 H -0.193 1.193 11 H -0.188 1.188 12 H -0.219 1.219 13 C 0.245 3.755 14 O -0.498 6.498 15 C -0.160 4.160 16 C -0.092 4.092 17 C -0.121 4.121 18 C -0.082 4.082 19 C -0.168 4.168 20 C -0.055 4.055 21 N -0.221 5.221 22 C -0.014 4.014 23 Cl -0.027 7.027 24 H 0.140 0.860 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.193 0.807 32 H 0.204 0.796 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.735 -17.876 0.055 18.492 hybrid contribution 0.641 1.816 0.055 1.927 sum 5.375 -16.060 0.110 16.936 Atomic orbital electron populations 1.80896 1.14902 1.13640 1.09434 1.29818 0.95936 0.88884 0.91643 1.19043 0.79997 1.03009 0.88375 1.43820 1.56805 1.08388 1.08691 1.19647 1.28571 0.82753 1.15676 0.89853 1.25915 0.94995 1.02278 0.96610 1.69945 1.18708 1.36965 1.27695 0.84991 0.78149 0.77125 0.78722 1.19273 1.18785 1.21863 1.20957 0.82034 0.89085 0.83466 1.90513 1.51750 1.81198 1.26320 1.21559 1.02923 0.91166 1.00360 1.20172 1.03614 0.88684 0.96767 1.20643 0.91816 0.97909 1.01731 1.21988 1.00706 0.91962 0.93589 1.22689 0.97763 0.97664 0.98677 1.23352 0.89414 0.98678 0.94077 1.66976 1.41193 1.00353 1.13574 1.21680 0.88097 0.89766 1.01810 1.98426 1.56008 1.54167 1.94111 0.85991 0.84376 0.91722 0.85943 0.90891 0.92153 0.88590 0.80657 0.79642 0.78848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.58 18.54 20.01 0.37 -24.21 16 2 C 0.25 11.19 12.82 89.44 1.15 12.34 16 3 C 0.22 8.37 4.91 84.57 0.42 8.78 16 4 N -0.46 -20.80 2.60 -645.42 -1.68 -22.48 16 5 C -0.34 -17.43 9.27 84.04 0.78 -16.65 16 6 H 0.08 4.62 7.43 -2.91 -0.02 4.59 16 7 C 0.00 0.20 4.84 84.93 0.41 0.61 16 8 N -0.89 -45.14 9.58 21.66 0.21 -44.94 16 9 Si 0.99 39.89 29.60 68.60 2.03 41.92 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 12 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.45 19.84 7.56 87.66 0.66 20.51 16 14 O -0.61 -31.51 15.65 -3.07 -0.05 -31.56 16 15 C -0.12 -3.85 4.24 29.85 0.13 -3.72 16 16 C -0.05 -1.58 4.10 29.85 0.12 -1.46 16 17 C -0.12 -2.86 5.16 -19.75 -0.10 -2.96 16 18 C -0.06 -0.89 9.82 22.46 0.22 -0.67 16 19 C -0.15 -1.75 10.11 22.36 0.23 -1.52 16 20 C 0.10 1.66 11.18 84.67 0.95 2.61 16 21 N -0.51 -13.23 10.34 -186.69 -1.93 -15.16 16 22 C 0.15 4.26 7.27 84.70 0.62 4.87 16 23 Cl -0.06 -1.85 26.81 -2.72 -0.07 -1.92 16 24 H 0.12 4.68 6.63 -2.38 -0.02 4.66 16 25 H 0.14 3.61 6.69 -2.39 -0.02 3.59 16 26 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 27 H 0.12 2.90 7.42 -2.39 -0.02 2.88 16 28 H 0.07 2.53 6.62 -2.39 -0.02 2.52 16 29 H 0.06 2.10 7.33 -2.39 -0.02 2.08 16 30 H 0.10 2.58 7.99 -2.39 -0.02 2.56 16 31 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 33 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -72.72 308.32 5.61 -67.11 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.16 Total: 8.48 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 5.57 Total: 22.73 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -3.03 Total: -106.77 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.05 Total: -31.56 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -72.72 5.61 -67.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824991358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.758 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds