Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47210 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47339 * 59.99682 * 3 2 1 7 7 C 1.37876 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47471 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99635 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 11 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47274 * 179.97438 * 16 15 13 18 18 H 1.08994 * 115.54839 * 330.66917 * 17 16 15 19 19 C 1.52993 * 117.49873 * 184.99544 * 17 16 15 20 20 C 1.52995 * 60.00429 * 252.51428 * 19 17 16 21 21 Cl 1.80295 * 117.49963 * 252.51418 * 20 19 17 22 22 Cl 1.80303 * 117.49671 * 107.49011 * 20 19 17 23 23 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46912 * 60.00012 * 9 7 2 25 25 H 1.09004 * 109.47536 * 300.00220 * 9 7 2 26 26 H 1.09005 * 109.46889 * 60.00186 * 10 9 7 27 27 H 1.08996 * 109.47223 * 300.00965 * 10 9 7 28 28 H 1.09005 * 109.46767 * 60.00250 * 11 10 9 29 29 H 1.09002 * 109.47113 * 300.00590 * 11 10 9 30 30 H 0.96995 * 120.00292 * 0.27801 * 12 11 10 31 31 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 32 32 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 33 33 H 1.09004 * 109.47330 * 299.99977 * 16 15 13 34 34 H 1.09005 * 109.47124 * 59.99773 * 16 15 13 35 35 H 1.09003 * 117.50419 * 0.02562 * 19 17 16 36 36 H 1.09004 * 117.49959 * 145.02107 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9833 -7.3713 0.0019 14 8 0.7909 -7.5929 0.0020 15 6 2.9626 -8.5167 0.0031 16 6 2.1977 -9.8417 0.0024 17 6 3.1920 -11.0046 0.0029 18 1 4.1495 -10.8047 -0.4780 19 6 2.6236 -12.4201 -0.1159 20 6 3.1919 -11.9335 1.2187 21 17 4.7758 -12.6139 1.7467 22 17 2.0199 -11.5740 2.5410 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8721 -3.6042 -0.8893 28 1 0.8535 -5.0451 -0.8887 29 1 0.8540 -5.0446 0.8914 30 1 3.3861 -5.9232 0.0058 31 1 3.5900 -8.4592 -0.8864 32 1 3.5886 -8.4586 0.8935 33 1 1.5700 -9.8994 0.8916 34 1 1.5720 -9.8995 -0.8884 35 1 1.5413 -12.5229 -0.1949 36 1 3.2073 -13.1516 -0.6747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826123923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -55.427221 kcal Electronic energy + Delta-G solvation = -17991.220199 eV Core-core repulsion = 14754.959381 eV Total energy + Delta-G solvation = -3236.260818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69356 -38.53150 -36.42215 -36.06751 -35.41259 -33.33370 -32.47716 -31.08108 -27.11950 -25.09916 -22.84281 -22.75910 -21.00526 -20.72900 -19.83920 -16.98113 -16.94840 -16.41037 -15.88764 -15.46385 -15.25327 -14.63198 -14.45805 -13.74952 -13.57039 -13.33047 -12.87546 -12.65751 -12.31514 -12.16036 -11.98042 -11.82536 -11.68817 -11.59031 -11.42694 -10.93517 -10.91985 -10.75329 -10.72370 -10.58282 -10.15276 -9.88545 -9.88443 -9.37544 -9.11365 -8.78575 -8.38935 -6.03268 -4.06389 0.78821 1.78203 2.73240 2.77351 3.28938 3.33417 3.36804 3.40369 3.69728 3.90033 4.42856 4.48988 4.58793 4.89850 4.97356 5.02196 5.09488 5.32611 5.36509 5.38469 5.71588 5.73000 5.77524 5.96295 6.14951 6.47975 6.58396 6.81950 6.99069 7.62228 7.69930 7.74480 7.95536 8.35416 8.39679 9.00567 9.57969 11.08067 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.037078 B = 0.002131 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.979075 B =13138.691779 C =13319.932083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.727 5.727 13 C 0.506 3.494 14 O -0.545 6.545 15 C -0.139 4.139 16 C -0.088 4.088 17 C -0.112 4.112 18 H 0.131 0.869 19 C -0.142 4.142 20 C -0.006 4.006 21 Cl -0.099 7.099 22 Cl -0.085 7.085 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.231 -27.098 0.035 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.378 5.378 13 C 0.292 3.708 14 O -0.423 6.423 15 C -0.179 4.179 16 C -0.126 4.126 17 C -0.131 4.131 18 H 0.149 0.851 19 C -0.179 4.179 20 C -0.057 4.057 21 Cl -0.072 7.072 22 Cl -0.058 7.058 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.232 0.768 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.140 0.860 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.240 -27.149 0.194 28.372 hybrid contribution 1.024 1.031 0.255 1.476 sum 9.265 -26.118 0.449 27.716 Atomic orbital electron populations 1.69973 1.06067 1.26597 1.50637 1.25037 0.94862 0.99340 0.95285 0.86525 0.80039 0.83744 0.77613 1.19758 1.20991 1.20992 1.21239 0.93019 0.90929 1.50815 0.92596 1.19038 0.93870 0.90905 0.97650 1.21884 0.99746 0.93381 1.00848 1.21641 0.91922 0.85208 1.01942 1.46238 1.10801 1.06043 1.74701 1.20580 0.89698 0.84167 0.76346 1.90705 1.17001 1.84869 1.49747 1.21644 0.98536 0.93150 1.04580 1.21165 0.96197 0.89783 1.05456 1.23377 1.02655 0.92473 0.94608 0.85146 1.24011 1.03439 0.97619 0.92871 1.26931 0.85332 1.08391 0.85039 1.98752 1.30057 1.86233 1.92155 1.98762 1.59317 1.94756 1.52961 0.92966 0.96291 0.96279 0.92748 0.92738 0.91802 0.91838 0.76795 0.88746 0.88751 0.89216 0.89343 0.85976 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 12 N -0.73 -9.84 5.56 -60.29 -0.33 -10.18 16 13 C 0.51 6.85 7.83 -10.98 -0.09 6.76 16 14 O -0.55 -9.67 15.98 5.56 0.09 -9.59 16 15 C -0.14 -1.19 5.66 -27.89 -0.16 -1.34 16 16 C -0.09 -0.75 4.70 -26.73 -0.13 -0.87 16 17 C -0.11 -0.69 5.58 -90.62 -0.51 -1.20 16 18 H 0.13 0.61 8.07 -51.93 -0.42 0.19 16 19 C -0.14 -0.75 9.93 -26.74 -0.27 -1.02 16 20 C -0.01 -0.04 3.62 -26.73 -0.10 -0.14 16 21 Cl -0.10 -0.78 29.29 -51.86 -1.52 -2.29 16 22 Cl -0.09 -0.79 27.27 -51.86 -1.41 -2.21 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.40 4.21 8.47 -40.82 -0.35 3.87 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.93 6.02 -51.93 -0.31 0.61 16 34 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -32.44 338.17 -9.58 -42.02 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.27 Total: -2.02 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -1.95 Total: -11.18 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.40 Total: -36.23 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.93 Total: -4.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.44 -9.58 -42.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826123923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.403 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds