Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47210 * 299.99980 * 3 2 1 6 6 H 1.48501 * 109.47339 * 59.99682 * 3 2 1 7 7 C 1.37876 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47471 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99635 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 11 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47274 * 179.97438 * 16 15 13 18 18 H 1.08994 * 115.54839 * 330.66917 * 17 16 15 19 19 C 1.52993 * 117.49873 * 184.99544 * 17 16 15 20 20 C 1.52995 * 60.00429 * 252.51428 * 19 17 16 21 21 Cl 1.80295 * 117.49963 * 252.51418 * 20 19 17 22 22 Cl 1.80303 * 117.49671 * 107.49011 * 20 19 17 23 23 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46912 * 60.00012 * 9 7 2 25 25 H 1.09004 * 109.47536 * 300.00220 * 9 7 2 26 26 H 1.09005 * 109.46889 * 60.00186 * 10 9 7 27 27 H 1.08996 * 109.47223 * 300.00965 * 10 9 7 28 28 H 1.09005 * 109.46767 * 60.00250 * 11 10 9 29 29 H 1.09002 * 109.47113 * 300.00590 * 11 10 9 30 30 H 0.96995 * 120.00292 * 0.27801 * 12 11 10 31 31 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 32 32 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 33 33 H 1.09004 * 109.47330 * 299.99977 * 16 15 13 34 34 H 1.09005 * 109.47124 * 59.99773 * 16 15 13 35 35 H 1.09003 * 117.50419 * 0.02562 * 19 17 16 36 36 H 1.09004 * 117.49959 * 145.02107 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9833 -7.3713 0.0019 14 8 0.7909 -7.5929 0.0020 15 6 2.9626 -8.5167 0.0031 16 6 2.1977 -9.8417 0.0024 17 6 3.1920 -11.0046 0.0029 18 1 4.1495 -10.8047 -0.4780 19 6 2.6236 -12.4201 -0.1159 20 6 3.1919 -11.9335 1.2187 21 17 4.7758 -12.6139 1.7467 22 17 2.0199 -11.5740 2.5410 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8721 -3.6042 -0.8893 28 1 0.8535 -5.0451 -0.8887 29 1 0.8540 -5.0446 0.8914 30 1 3.3861 -5.9232 0.0058 31 1 3.5900 -8.4592 -0.8864 32 1 3.5886 -8.4586 0.8935 33 1 1.5700 -9.8994 0.8916 34 1 1.5720 -9.8995 -0.8884 35 1 1.5413 -12.5229 -0.1949 36 1 3.2073 -13.1516 -0.6747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826123923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -75.084289 kcal Electronic energy + Delta-G solvation = -17992.072593 eV Core-core repulsion = 14754.959381 eV Total energy + Delta-G solvation = -3237.113212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76662 -39.14213 -37.03465 -36.98182 -36.57342 -35.17211 -33.45893 -32.64124 -28.78460 -26.26437 -24.43794 -23.24658 -22.29882 -21.58653 -21.07164 -18.56300 -17.90907 -17.53096 -16.91594 -16.72335 -16.36901 -16.14553 -15.76480 -14.76117 -14.68190 -14.23673 -13.93215 -13.77940 -13.68255 -13.38583 -13.18441 -12.79472 -12.73395 -12.55858 -12.54767 -12.33811 -12.19393 -12.05153 -11.67514 -11.59884 -11.57150 -11.29053 -11.22300 -10.79314 -10.66174 -10.56735 -10.04986 -8.20059 -6.31614 0.23768 1.21923 1.41711 1.41925 1.55169 1.70833 2.21974 2.30679 2.43118 3.13792 3.17216 3.39719 3.73134 4.05167 4.16279 4.20496 4.27778 4.36850 4.50006 4.55905 4.68943 4.74664 4.90282 4.94648 5.03470 5.08329 5.17185 5.32400 5.47621 5.54964 5.70337 5.83928 6.21801 6.64451 6.86469 7.33453 7.38269 8.92319 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.037078 B = 0.002131 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.979075 B =13138.691779 C =13319.932083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.718 5.718 13 C 0.502 3.498 14 O -0.593 6.593 15 C -0.127 4.127 16 C -0.088 4.088 17 C -0.101 4.101 18 H 0.155 0.845 19 C -0.128 4.128 20 C -0.019 4.019 21 Cl -0.104 7.104 22 Cl -0.111 7.111 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.010 1.010 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.417 0.583 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.042 -27.715 -0.702 30.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.370 5.370 13 C 0.290 3.710 14 O -0.474 6.474 15 C -0.167 4.167 16 C -0.126 4.126 17 C -0.120 4.120 18 H 0.172 0.828 19 C -0.165 4.165 20 C -0.070 4.070 21 Cl -0.077 7.077 22 Cl -0.084 7.084 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.254 0.746 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.102 -27.784 -0.543 29.925 hybrid contribution 0.110 1.183 0.470 1.278 sum 11.213 -26.601 -0.072 28.868 Atomic orbital electron populations 1.70119 1.07978 1.27739 1.51802 1.26045 0.95760 1.03639 0.94818 0.85353 0.79224 0.78573 0.77607 1.18112 1.20550 1.20651 1.21713 0.93764 0.91975 1.50262 0.91471 1.18961 0.94504 0.93145 0.94961 1.21587 0.98364 0.91816 1.02129 1.21184 0.92121 0.85910 1.00351 1.46042 1.11122 1.05251 1.74574 1.21524 0.89943 0.84873 0.74653 1.90691 1.19492 1.85494 1.51746 1.21688 0.97450 0.90456 1.07093 1.21093 0.96540 0.90792 1.04170 1.23369 1.03024 0.91917 0.93678 0.82787 1.24168 1.03910 0.97451 0.91018 1.27154 0.84970 1.10110 0.84741 1.98751 1.30302 1.86318 1.92303 1.98759 1.60325 1.94947 1.54383 0.92821 0.99011 0.99157 0.91449 0.91208 0.93392 0.93753 0.74637 0.85256 0.86829 0.91423 0.89976 0.85845 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 11 C 0.13 4.48 5.67 86.38 0.49 4.98 16 12 N -0.72 -18.34 5.56 -463.05 -2.57 -20.91 16 13 C 0.50 12.96 7.83 87.66 0.69 13.65 16 14 O -0.59 -21.29 15.98 -3.03 -0.05 -21.34 16 15 C -0.13 -1.81 5.66 29.85 0.17 -1.64 16 16 C -0.09 -1.33 4.70 30.59 0.14 -1.19 16 17 C -0.10 -0.96 5.58 -10.79 -0.06 -1.02 16 18 H 0.15 0.78 8.07 -2.39 -0.02 0.76 16 19 C -0.13 -1.05 9.93 30.59 0.30 -0.74 16 20 C -0.02 -0.24 3.62 30.59 0.11 -0.13 16 21 Cl -0.10 -1.43 29.29 -2.72 -0.08 -1.51 16 22 Cl -0.11 -2.03 27.27 -2.72 -0.07 -2.11 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 25 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 26 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.42 7.60 8.47 -92.71 -0.79 6.81 16 31 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.36 6.02 -2.38 -0.01 1.35 16 34 H 0.08 1.35 8.10 -2.38 -0.02 1.33 16 35 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.14 0.58 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -72.45 338.17 2.68 -69.77 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.30 Total: 5.50 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 2.85 Total: -18.09 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.29 Total: -77.92 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.15 Total: -3.62 kcal Total: -72.45 2.68 -69.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826123923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.314 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds