Wall clock time and date at job start Tue Mar 31 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 115.55137 * 2 1 4 4 N 1.46899 * 109.47544 * 54.90630 * 3 2 1 5 5 C 1.48559 * 111.00159 * 194.23395 * 4 3 2 6 6 C 1.54384 * 104.59379 * 200.95427 * 5 4 3 7 7 C 1.54264 * 105.05947 * 23.85582 * 6 5 4 8 8 O 1.42900 * 110.32144 * 241.00188 * 7 6 5 9 9 C 1.50691 * 110.32706 * 118.88986 * 7 6 5 10 10 H 1.07996 * 120.00433 * 237.37188 * 9 7 6 11 11 C 1.37883 * 119.99720 * 57.37483 * 9 7 6 12 12 N 1.31514 * 119.99776 * 352.85830 * 11 9 7 13 13 Si 1.86798 * 120.00182 * 172.86369 * 11 9 7 14 14 H 1.48500 * 109.46933 * 269.99919 * 13 11 9 15 15 H 1.48497 * 109.47081 * 29.99623 * 13 11 9 16 16 H 1.48496 * 109.47393 * 149.99774 * 13 11 9 17 17 C 1.48563 * 111.00156 * 78.80877 * 4 3 2 18 18 C 1.53002 * 117.49816 * 214.32746 * 2 1 3 19 19 C 1.53002 * 117.49881 * 145.66865 * 2 1 3 20 20 Cl 1.80304 * 117.50009 * 215.00436 * 19 2 1 21 21 Cl 1.80299 * 117.49874 * 0.02562 * 19 2 1 22 22 H 1.08997 * 109.46751 * 59.34291 * 1 2 3 23 23 H 1.08998 * 109.47472 * 179.34440 * 1 2 3 24 24 H 1.09007 * 109.46988 * 299.34617 * 1 2 3 25 25 H 1.08999 * 109.47270 * 294.90400 * 3 2 1 26 26 H 1.09001 * 109.47085 * 174.90377 * 3 2 1 27 27 H 1.08998 * 110.41109 * 82.18153 * 5 4 3 28 28 H 1.08997 * 110.51248 * 319.78467 * 5 4 3 29 29 H 1.08992 * 110.32622 * 264.95941 * 6 5 4 30 30 H 1.09000 * 110.40867 * 142.79224 * 6 5 4 31 31 H 0.96696 * 113.99819 * 292.01810 * 8 7 6 32 32 H 0.97000 * 120.00474 * 354.10214 * 12 11 9 33 33 H 1.09002 * 110.40298 * 40.26746 * 17 4 3 34 34 H 1.08998 * 110.41170 * 277.82344 * 17 4 3 35 35 H 1.09000 * 117.49957 * 359.97438 * 18 2 1 36 36 H 1.08998 * 117.49859 * 144.97447 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.6828 2.1656 1.1332 5 6 2.0264 3.6029 0.9811 6 6 1.9350 4.1781 2.4109 7 6 2.1462 2.9680 3.3440 8 8 0.9951 2.7691 4.1670 9 6 3.3704 3.1732 4.1984 10 1 4.1738 2.4519 4.1730 11 6 3.4648 4.2819 5.0127 12 7 2.5558 5.2296 4.9411 13 14 4.8839 4.4379 6.2173 14 1 4.5013 3.8253 7.5149 15 1 6.0752 3.7388 5.6721 16 1 5.2034 5.8734 6.4228 17 6 2.3473 1.7634 2.3995 18 6 2.2364 -1.1208 -0.7653 19 6 2.2364 -1.1207 0.7654 20 17 3.7828 -0.7137 1.5984 21 17 1.2022 -2.3407 1.5977 22 1 -0.3633 0.5240 -0.8840 23 1 -0.3634 -1.0276 -0.0118 24 1 -0.3633 0.5037 0.8959 25 1 1.9562 1.8948 -0.9321 26 1 3.2701 1.2666 0.0913 27 1 1.3096 4.0979 0.3258 28 1 3.0377 3.7146 0.5903 29 1 0.9527 4.6192 2.5795 30 1 2.7158 4.9214 2.5722 31 1 0.8522 3.4687 4.8191 32 1 1.8678 5.1912 4.2584 33 1 3.4095 1.5853 2.2314 34 1 1.8723 0.8734 2.8121 35 1 1.6112 -1.8584 -1.2685 36 1 3.1711 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830006363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:18 Heat of formation + Delta-G solvation = -28.768109 kcal Electronic energy + Delta-G solvation = -20524.507806 eV Core-core repulsion = 17289.403014 eV Total energy + Delta-G solvation = -3235.104792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.31662 -37.86904 -35.94462 -35.78960 -34.67785 -32.26801 -30.04866 -28.35315 -28.02819 -25.44739 -24.03743 -22.37984 -20.68686 -19.60279 -18.94220 -17.72415 -16.26659 -15.80221 -15.31153 -14.56381 -14.07389 -13.82126 -13.65751 -13.37165 -13.27220 -12.65078 -12.59531 -12.53824 -12.07155 -11.88663 -11.50250 -11.36011 -11.30194 -10.96962 -10.90943 -10.79368 -10.68716 -10.63232 -10.37277 -10.16023 -10.12826 -10.01956 -9.52414 -9.00304 -8.55757 -8.08361 -7.84228 -6.44017 -4.27645 1.27636 2.25863 3.14774 3.39328 3.40023 3.56958 4.09200 4.13715 4.42767 4.70522 4.88197 5.06515 5.13932 5.32572 5.48390 5.53750 5.58697 5.73094 5.86711 5.89754 5.92897 5.97976 6.06923 6.37476 6.41282 6.53122 6.78883 6.86618 7.16576 7.25634 7.38285 7.56957 8.03827 8.28781 8.69962 9.19445 9.44585 10.86467 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.005607 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.788534 B = 4993.002941 C = 5457.696282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 C 0.070 3.930 4 N -0.505 5.505 5 C 0.038 3.962 6 C -0.143 4.143 7 C 0.232 3.768 8 O -0.583 6.583 9 C -0.614 4.614 10 H 0.053 0.947 11 C 0.030 3.970 12 N -0.914 5.914 13 Si 1.067 2.933 14 H -0.285 1.285 15 H -0.289 1.289 16 H -0.284 1.284 17 C 0.062 3.938 18 C -0.146 4.146 19 C 0.004 3.996 20 Cl -0.086 7.086 21 Cl -0.099 7.099 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.365 0.635 32 H 0.277 0.723 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -10.090 -12.414 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.070 4.070 3 C -0.059 4.059 4 N -0.229 5.229 5 C -0.090 4.090 6 C -0.181 4.181 7 C 0.193 3.807 8 O -0.389 6.389 9 C -0.652 4.652 10 H 0.072 0.928 11 C -0.175 4.175 12 N -0.553 5.553 13 Si 0.895 3.105 14 H -0.211 1.211 15 H -0.215 1.215 16 H -0.210 1.210 17 C -0.065 4.065 18 C -0.185 4.185 19 C -0.048 4.048 20 Cl -0.059 7.059 21 Cl -0.071 7.071 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.212 0.788 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.201 -9.848 -11.431 15.136 hybrid contribution 0.560 -0.503 -0.786 1.088 sum -0.640 -10.351 -12.217 16.025 Atomic orbital electron populations 1.21319 0.89632 1.01949 1.03950 1.22359 0.97094 0.90735 0.96835 1.21867 0.96776 0.91013 0.96265 1.65337 1.53332 1.02387 1.01810 1.23036 0.98055 0.88869 0.99010 1.23182 1.00950 1.00457 0.93557 1.19526 0.84601 0.89098 0.87506 1.86300 1.49059 1.51775 1.51758 1.22509 1.04251 1.10138 1.28330 0.92833 1.25829 1.01139 0.92016 0.98505 1.70836 1.15898 1.34087 1.34470 0.83579 0.74852 0.76087 0.75973 1.21141 1.21509 1.20988 1.23180 0.96229 0.98779 0.88307 1.24118 1.03826 1.01040 0.89475 1.27004 0.88179 0.98580 0.91019 1.98764 1.33089 1.92970 1.81043 1.98727 1.68359 1.58580 1.81484 0.91464 0.92406 0.89670 0.90009 0.93473 0.91488 0.94669 0.92671 0.90578 0.78796 0.90981 0.92784 0.90977 0.86342 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.02 37.16 0.33 -1.04 16 2 C -0.07 -0.88 2.18 -154.51 -0.34 -1.22 16 3 C 0.07 1.02 4.54 -3.83 -0.02 1.00 16 4 N -0.51 -9.34 4.85 -229.97 -1.12 -10.45 16 5 C 0.04 0.72 6.42 -2.18 -0.01 0.71 16 6 C -0.14 -3.27 4.52 -25.34 -0.11 -3.38 16 7 C 0.23 5.82 1.03 -90.39 -0.09 5.73 16 8 O -0.58 -15.33 12.97 -35.23 -0.46 -15.79 16 9 C -0.61 -16.85 8.10 -34.44 -0.28 -17.13 16 10 H 0.05 1.50 7.63 -52.49 -0.40 1.10 16 11 C 0.03 0.82 4.96 -17.82 -0.09 0.73 16 12 N -0.91 -25.71 12.52 55.43 0.69 -25.02 16 13 Si 1.07 24.61 29.91 -169.99 -5.08 19.52 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.06 1.36 3.97 -2.18 -0.01 1.35 16 18 C -0.15 -1.49 9.65 -26.69 -0.26 -1.75 16 19 C 0.00 0.05 3.34 -26.69 -0.09 -0.04 16 20 Cl -0.09 -1.35 24.14 -51.86 -1.25 -2.60 16 21 Cl -0.10 -1.36 27.69 -51.86 -1.44 -2.79 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.64 7.06 -51.93 -0.37 0.28 16 24 H 0.08 1.29 7.92 -51.92 -0.41 0.88 16 25 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 26 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 29 H 0.05 1.27 7.64 -51.93 -0.40 0.87 16 30 H 0.08 1.89 6.64 -51.93 -0.34 1.55 16 31 H 0.37 9.56 7.41 45.56 0.34 9.90 16 32 H 0.28 7.58 4.43 -40.82 -0.18 7.40 16 33 H 0.05 1.20 5.57 -51.93 -0.29 0.91 16 34 H 0.07 1.67 7.70 -51.93 -0.40 1.27 16 35 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -29.07 308.07 -9.07 -38.14 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.10 Total: 9.39 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.96 Total: -15.04 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.42 Total: -35.47 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.46 Total: -15.79 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.52 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -2.69 Total: -5.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.07 -9.07 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830006363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.376 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds