Wall clock time and date at job start Tue Mar 31 2020 07:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 115.55137 * 2 1 4 4 N 1.46899 * 109.47544 * 54.90630 * 3 2 1 5 5 C 1.48559 * 111.00159 * 194.23395 * 4 3 2 6 6 C 1.54384 * 104.59379 * 200.95427 * 5 4 3 7 7 C 1.54264 * 105.05947 * 23.85582 * 6 5 4 8 8 O 1.42900 * 110.32144 * 241.00188 * 7 6 5 9 9 C 1.50691 * 110.32706 * 118.88986 * 7 6 5 10 10 H 1.07996 * 120.00433 * 237.37188 * 9 7 6 11 11 C 1.37883 * 119.99720 * 57.37483 * 9 7 6 12 12 N 1.31514 * 119.99776 * 352.85830 * 11 9 7 13 13 Si 1.86798 * 120.00182 * 172.86369 * 11 9 7 14 14 H 1.48500 * 109.46933 * 269.99919 * 13 11 9 15 15 H 1.48497 * 109.47081 * 29.99623 * 13 11 9 16 16 H 1.48496 * 109.47393 * 149.99774 * 13 11 9 17 17 C 1.48563 * 111.00156 * 78.80877 * 4 3 2 18 18 C 1.53002 * 117.49816 * 214.32746 * 2 1 3 19 19 C 1.53002 * 117.49881 * 145.66865 * 2 1 3 20 20 Cl 1.80304 * 117.50009 * 215.00436 * 19 2 1 21 21 Cl 1.80299 * 117.49874 * 0.02562 * 19 2 1 22 22 H 1.08997 * 109.46751 * 59.34291 * 1 2 3 23 23 H 1.08998 * 109.47472 * 179.34440 * 1 2 3 24 24 H 1.09007 * 109.46988 * 299.34617 * 1 2 3 25 25 H 1.08999 * 109.47270 * 294.90400 * 3 2 1 26 26 H 1.09001 * 109.47085 * 174.90377 * 3 2 1 27 27 H 1.08998 * 110.41109 * 82.18153 * 5 4 3 28 28 H 1.08997 * 110.51248 * 319.78467 * 5 4 3 29 29 H 1.08992 * 110.32622 * 264.95941 * 6 5 4 30 30 H 1.09000 * 110.40867 * 142.79224 * 6 5 4 31 31 H 0.96696 * 113.99819 * 292.01810 * 8 7 6 32 32 H 0.97000 * 120.00474 * 354.10214 * 12 11 9 33 33 H 1.09002 * 110.40298 * 40.26746 * 17 4 3 34 34 H 1.08998 * 110.41170 * 277.82344 * 17 4 3 35 35 H 1.09000 * 117.49957 * 359.97438 * 18 2 1 36 36 H 1.08998 * 117.49859 * 144.97447 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.6828 2.1656 1.1332 5 6 2.0264 3.6029 0.9811 6 6 1.9350 4.1781 2.4109 7 6 2.1462 2.9680 3.3440 8 8 0.9951 2.7691 4.1670 9 6 3.3704 3.1732 4.1984 10 1 4.1738 2.4519 4.1730 11 6 3.4648 4.2819 5.0127 12 7 2.5558 5.2296 4.9411 13 14 4.8839 4.4379 6.2173 14 1 4.5013 3.8253 7.5149 15 1 6.0752 3.7388 5.6721 16 1 5.2034 5.8734 6.4228 17 6 2.3473 1.7634 2.3995 18 6 2.2364 -1.1208 -0.7653 19 6 2.2364 -1.1207 0.7654 20 17 3.7828 -0.7137 1.5984 21 17 1.2022 -2.3407 1.5977 22 1 -0.3633 0.5240 -0.8840 23 1 -0.3634 -1.0276 -0.0118 24 1 -0.3633 0.5037 0.8959 25 1 1.9562 1.8948 -0.9321 26 1 3.2701 1.2666 0.0913 27 1 1.3096 4.0979 0.3258 28 1 3.0377 3.7146 0.5903 29 1 0.9527 4.6192 2.5795 30 1 2.7158 4.9214 2.5722 31 1 0.8522 3.4687 4.8191 32 1 1.8678 5.1912 4.2584 33 1 3.4095 1.5853 2.2314 34 1 1.8723 0.8734 2.8121 35 1 1.6112 -1.8584 -1.2685 36 1 3.1711 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830006363.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:17 Heat of formation + Delta-G solvation = -48.258912 kcal Electronic energy + Delta-G solvation = -20525.352990 eV Core-core repulsion = 17289.403014 eV Total energy + Delta-G solvation = -3235.949977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69100 -39.30125 -37.09534 -36.99265 -36.24108 -34.37307 -31.60951 -29.84260 -29.36920 -27.05276 -25.84180 -23.30833 -22.26291 -21.42790 -20.14892 -19.68990 -17.47869 -17.31102 -16.61377 -16.23078 -15.70447 -15.61546 -15.31316 -14.68419 -14.62236 -14.19900 -14.01744 -13.67808 -13.35689 -13.25672 -13.03722 -12.78536 -12.60714 -12.46284 -12.41468 -12.35213 -12.25812 -12.05232 -11.96823 -11.86752 -11.68383 -11.11520 -10.99448 -10.64730 -10.52646 -10.08408 -9.36502 -8.60459 -6.46138 0.25439 1.21023 1.50900 1.56366 1.75629 2.18789 2.50344 2.97290 3.03965 3.11717 3.53514 3.73906 3.80936 3.96553 4.05157 4.17455 4.37384 4.52696 4.57592 4.62770 4.67918 4.80351 4.82982 4.96535 4.99685 5.00691 5.08693 5.28200 5.36317 5.41819 5.66268 6.05416 6.06288 6.15734 6.55754 7.11447 7.32976 8.70777 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021340 B = 0.005607 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.788534 B = 4993.002941 C = 5457.696282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.079 4.079 3 C 0.067 3.933 4 N -0.505 5.505 5 C 0.045 3.955 6 C -0.136 4.136 7 C 0.212 3.788 8 O -0.592 6.592 9 C -0.632 4.632 10 H 0.039 0.961 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 1.109 2.891 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.279 1.279 17 C 0.082 3.918 18 C -0.106 4.106 19 C -0.020 4.020 20 Cl -0.114 7.114 21 Cl -0.107 7.107 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.111 0.889 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.360 0.640 32 H 0.273 0.727 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.146 0.854 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -10.767 -14.545 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.081 4.081 3 C -0.061 4.061 4 N -0.229 5.229 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.173 3.827 8 O -0.398 6.398 9 C -0.670 4.670 10 H 0.058 0.942 11 C -0.210 4.210 12 N -0.569 5.569 13 Si 0.931 3.069 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.205 1.205 17 C -0.046 4.046 18 C -0.144 4.144 19 C -0.071 4.071 20 Cl -0.087 7.087 21 Cl -0.080 7.080 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.129 0.871 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.207 0.793 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.049 -10.539 -13.586 17.227 hybrid contribution 0.457 -0.311 -0.154 0.574 sum -0.591 -10.850 -13.740 17.518 Atomic orbital electron populations 1.21265 0.89226 1.02536 1.03249 1.22393 0.97386 0.90215 0.98058 1.22010 0.96717 0.91765 0.95586 1.65299 1.53236 1.02512 1.01852 1.23005 0.99505 0.89086 0.96628 1.22958 0.99436 0.99089 0.95966 1.19845 0.83353 0.91607 0.87927 1.86296 1.49674 1.51818 1.51986 1.22752 1.04906 1.09948 1.29431 0.94234 1.27010 1.02598 0.91630 0.99752 1.70903 1.16475 1.34659 1.34868 0.83033 0.72835 0.76419 0.74579 1.20234 1.20326 1.20464 1.22840 0.95884 0.96516 0.89359 1.24305 1.04221 0.99000 0.86828 1.27371 0.87406 0.99556 0.92744 1.98758 1.34842 1.93216 1.81898 1.98723 1.68475 1.58768 1.82001 0.89419 0.91305 0.92973 0.87112 0.93763 0.88580 0.93871 0.93431 0.93110 0.79323 0.91437 0.93330 0.92780 0.83617 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.02 71.98 0.65 -1.70 16 2 C -0.08 -1.81 2.18 -52.18 -0.11 -1.93 16 3 C 0.07 1.79 4.54 86.30 0.39 2.18 16 4 N -0.51 -17.99 4.85 -881.48 -4.27 -22.26 16 5 C 0.05 1.64 6.42 86.45 0.56 2.20 16 6 C -0.14 -6.27 4.52 31.49 0.14 -6.13 16 7 C 0.21 10.82 1.03 -10.64 -0.01 10.81 16 8 O -0.59 -32.01 12.97 -148.98 -1.93 -33.94 16 9 C -0.63 -35.43 8.10 25.60 0.21 -35.22 16 10 H 0.04 2.26 7.63 -2.91 -0.02 2.24 16 11 C -0.01 -0.51 4.96 84.66 0.42 -0.09 16 12 N -0.93 -53.13 12.52 21.45 0.27 -52.86 16 13 Si 1.11 49.74 29.91 68.60 2.05 51.79 16 14 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 17 C 0.08 3.59 3.97 86.45 0.34 3.93 16 18 C -0.11 -1.74 9.65 30.62 0.30 -1.44 16 19 C -0.02 -0.49 3.34 30.62 0.10 -0.39 16 20 Cl -0.11 -3.52 24.14 -2.72 -0.07 -3.59 16 21 Cl -0.11 -2.82 27.69 -2.72 -0.08 -2.90 16 22 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.35 7.06 -2.39 -0.02 1.34 16 24 H 0.05 1.52 7.92 -2.38 -0.02 1.50 16 25 H 0.11 2.33 8.03 -2.39 -0.02 2.31 16 26 H 0.04 1.23 6.34 -2.39 -0.02 1.22 16 27 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.04 1.49 8.00 -2.39 -0.02 1.48 16 29 H 0.05 2.22 7.64 -2.39 -0.02 2.20 16 30 H 0.05 2.57 6.64 -2.39 -0.02 2.56 16 31 H 0.36 19.58 7.41 -74.06 -0.55 19.03 16 32 H 0.27 15.34 4.43 -92.71 -0.41 14.93 16 33 H 0.05 2.17 5.57 -2.39 -0.01 2.16 16 34 H 0.05 2.54 7.70 -2.39 -0.02 2.53 16 35 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -63.97 308.07 -0.14 -64.11 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.91 Total: 27.42 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 2.98 Total: -27.78 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -4.01 Total: -75.12 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.93 Total: -33.94 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Atomic # 17 Polarization: -6.34 SS G_CDS: -0.14 Total: -6.48 kcal Total: -63.97 -0.14 -64.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830006363.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.850 kcal (2) G-P(sol) polarization free energy of solvation -63.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds