Wall clock time and date at job start Tue Mar 31 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 115.56506 * 2 1 4 4 N 1.46902 * 109.47084 * 325.68724 * 3 2 1 5 5 C 1.47844 * 110.99892 * 290.84122 * 4 3 2 6 6 C 1.54909 * 104.79711 * 213.63647 * 5 4 3 7 7 C 1.55140 * 101.65187 * 37.07252 * 6 5 4 8 8 O 1.42897 * 110.70527 * 82.72997 * 7 6 5 9 9 C 1.50696 * 110.85276 * 205.89495 * 7 6 5 10 10 H 1.08004 * 120.00316 * 20.83475 * 9 7 6 11 11 C 1.37877 * 119.99792 * 200.84228 * 9 7 6 12 12 N 1.31517 * 120.00042 * 173.62400 * 11 9 7 13 13 Si 1.86802 * 120.00141 * 353.62538 * 11 9 7 14 14 H 1.48496 * 109.47383 * 86.33732 * 13 11 9 15 15 H 1.48494 * 109.47251 * 206.33863 * 13 11 9 16 16 H 1.48503 * 109.46891 * 326.33950 * 13 11 9 17 17 C 1.47446 * 111.00014 * 170.00291 * 4 3 2 18 18 C 1.53005 * 117.49480 * 214.30639 * 2 1 3 19 19 C 1.53002 * 60.00006 * 252.51321 * 18 2 1 20 20 Cl 1.80303 * 117.50182 * 252.51070 * 19 18 2 21 21 Cl 1.80307 * 117.49738 * 107.48905 * 19 18 2 22 22 H 1.08999 * 109.47050 * 274.31706 * 1 2 3 23 23 H 1.09001 * 109.46895 * 34.30902 * 1 2 3 24 24 H 1.08997 * 109.47444 * 154.31164 * 1 2 3 25 25 H 1.09000 * 109.47570 * 85.68383 * 3 2 1 26 26 H 1.09004 * 109.47100 * 205.69105 * 3 2 1 27 27 H 1.09001 * 110.37590 * 332.47080 * 5 4 3 28 28 H 1.09001 * 110.37436 * 94.80890 * 5 4 3 29 29 H 1.08997 * 110.98869 * 278.98171 * 6 5 4 30 30 H 1.09000 * 110.99046 * 155.16821 * 6 5 4 31 31 H 0.96702 * 114.00240 * 61.05720 * 8 7 6 32 32 H 0.97000 * 119.99876 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.88514 * 242.66330 * 17 4 3 34 34 H 1.08999 * 109.88524 * 3.85057 * 17 4 3 35 35 H 1.08995 * 117.49406 * 145.02507 * 18 2 1 36 36 H 1.08997 * 117.50088 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 7 1.3696 2.3155 -0.7807 5 6 1.4078 1.9798 -2.2201 6 6 1.3176 3.3446 -2.9472 7 6 2.1618 4.2528 -2.0149 8 8 3.5547 4.1183 -2.3045 9 6 1.7312 5.6920 -2.1342 10 1 0.7519 5.9324 -2.5209 11 6 2.5876 6.7019 -1.7498 12 7 2.2640 7.9576 -1.9693 13 14 4.2074 6.2866 -0.9172 14 1 5.2440 6.0329 -1.9497 15 1 4.6297 7.4240 -0.0609 16 1 4.0362 5.0728 -0.0790 17 6 1.8411 3.7020 -0.6095 18 6 2.2364 -1.1211 -0.7650 19 6 2.2364 -1.1210 0.7651 20 17 3.7831 -0.7145 1.5976 21 17 1.2020 -2.3408 1.5976 22 1 -0.3633 0.0774 1.0247 23 1 -0.3633 0.8489 -0.5793 24 1 -0.3634 -0.9261 -0.4454 25 1 2.2773 1.7413 1.0247 26 1 3.1825 1.3082 -0.4455 27 1 2.3435 1.4787 -2.4681 28 1 0.5578 1.3513 -2.4858 29 1 0.2856 3.6913 -3.0002 30 1 1.7600 3.2871 -3.9417 31 1 3.7956 4.3738 -3.2055 32 1 2.8667 8.6680 -1.6992 33 1 1.0606 4.3043 -0.1444 34 1 2.7395 3.7145 0.0076 35 1 3.1714 -0.8753 -1.2682 36 1 1.6111 -1.8584 -1.2685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830006369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:24 Heat of formation + Delta-G solvation = -27.279252 kcal Electronic energy + Delta-G solvation = -20181.692293 eV Core-core repulsion = 16946.652063 eV Total energy + Delta-G solvation = -3235.040230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.50206 -38.05877 -36.13818 -36.00768 -34.71837 -32.33759 -30.54410 -28.66867 -28.15282 -25.95042 -23.99798 -22.43717 -20.82907 -19.69504 -19.15315 -17.36322 -16.45826 -15.71653 -15.20134 -14.98036 -14.70631 -14.32665 -13.87499 -13.32330 -13.15428 -12.97415 -12.66007 -12.30389 -12.18199 -11.97664 -11.80162 -11.71963 -11.54113 -11.33192 -11.21635 -10.92031 -10.82834 -10.70733 -10.59126 -10.28217 -10.15891 -10.02912 -9.72282 -9.17934 -8.59509 -8.52266 -7.84755 -6.17941 -4.28096 1.04855 2.08027 3.04364 3.43296 3.50387 3.64613 3.93635 4.15727 4.48100 4.55301 4.83378 5.01090 5.08416 5.18181 5.33308 5.45527 5.52316 5.64609 5.76178 5.87681 5.92631 5.95802 6.01133 6.10681 6.21745 6.40261 6.56674 6.68402 6.81118 7.15744 7.34616 7.52767 7.58332 8.15796 8.68003 8.85695 9.44851 10.91604 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.004621 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.670631 B = 6058.255954 C = 6582.588026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 C 0.084 3.916 4 N -0.524 5.524 5 C 0.045 3.955 6 C -0.143 4.143 7 C 0.207 3.793 8 O -0.570 6.570 9 C -0.550 4.550 10 H 0.079 0.921 11 C 0.074 3.926 12 N -0.890 5.890 13 Si 0.940 3.060 14 H -0.291 1.291 15 H -0.323 1.323 16 H -0.269 1.269 17 C 0.051 3.949 18 C -0.143 4.143 19 C 0.002 3.998 20 Cl -0.099 7.099 21 Cl -0.101 7.101 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.370 0.630 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -18.866 2.754 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.045 4.045 4 N -0.248 5.248 5 C -0.083 4.083 6 C -0.181 4.181 7 C 0.167 3.833 8 O -0.378 6.378 9 C -0.587 4.587 10 H 0.097 0.903 11 C -0.130 4.130 12 N -0.526 5.526 13 Si 0.774 3.226 14 H -0.218 1.218 15 H -0.254 1.254 16 H -0.195 1.195 17 C -0.075 4.075 18 C -0.181 4.181 19 C -0.050 4.050 20 Cl -0.072 7.072 21 Cl -0.074 7.074 22 H 0.084 0.916 23 H 0.116 0.884 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.217 0.783 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.189 -18.992 3.718 19.389 hybrid contribution 1.840 -0.030 -0.197 1.851 sum 0.651 -19.022 3.521 19.356 Atomic orbital electron populations 1.21427 0.89324 1.03203 1.03284 1.22471 0.97291 0.90887 0.96374 1.21837 0.93865 0.89135 0.99688 1.63644 1.50724 1.02849 1.07597 1.23019 0.99491 0.97876 0.87884 1.23249 1.01986 0.94458 0.98419 1.20354 0.77704 0.94746 0.90521 1.86133 1.27590 1.88917 1.35156 1.21269 1.03802 0.88006 1.45638 0.90301 1.25110 0.99138 0.94615 0.94144 1.69971 1.37797 0.99433 1.45404 0.85901 0.82264 0.75450 0.78957 1.21846 1.25407 1.19514 1.23353 0.99326 0.86376 0.98491 1.24213 1.03946 1.01108 0.88846 1.27124 0.87592 0.98769 0.91536 1.98747 1.33490 1.93490 1.81428 1.98728 1.68402 1.58748 1.81490 0.91617 0.88441 0.92708 0.90011 0.93628 0.94229 0.91405 0.90524 0.91907 0.78259 0.92514 0.88897 0.92715 0.86517 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 8.70 37.16 0.32 -0.96 16 2 C -0.07 -0.81 2.01 -154.51 -0.31 -1.12 16 3 C 0.08 1.22 3.75 -3.83 -0.01 1.21 16 4 N -0.52 -8.65 3.83 -231.25 -0.89 -9.54 16 5 C 0.04 0.69 5.83 -2.30 -0.01 0.68 16 6 C -0.14 -2.58 6.23 -24.59 -0.15 -2.73 16 7 C 0.21 4.46 0.68 -89.95 -0.06 4.40 16 8 O -0.57 -12.15 8.88 -35.23 -0.31 -12.46 16 9 C -0.55 -14.46 8.71 -34.44 -0.30 -14.76 16 10 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 11 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 12 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 13 Si 0.94 23.26 24.90 -169.99 -4.23 19.03 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.32 -8.23 7.11 56.52 0.40 -7.83 16 16 H -0.27 -6.55 5.18 56.52 0.29 -6.26 16 17 C 0.05 1.05 5.64 -2.84 -0.02 1.03 16 18 C -0.14 -1.44 9.50 -26.73 -0.25 -1.69 16 19 C 0.00 0.02 3.61 -26.73 -0.10 -0.08 16 20 Cl -0.10 -1.23 28.32 -51.86 -1.47 -2.69 16 21 Cl -0.10 -1.10 28.32 -51.86 -1.47 -2.57 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.10 1.21 5.95 -51.93 -0.31 0.90 16 24 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 25 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 26 H 0.05 0.71 7.61 -51.93 -0.39 0.32 16 27 H 0.04 0.60 7.62 -51.93 -0.40 0.21 16 28 H 0.07 0.92 7.54 -51.93 -0.39 0.53 16 29 H 0.08 1.43 7.99 -51.93 -0.42 1.02 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.37 7.01 9.07 45.56 0.41 7.42 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 2.00 7.82 -51.93 -0.41 1.59 16 34 H 0.05 1.18 5.70 -51.93 -0.30 0.88 16 35 H 0.12 1.15 8.05 -51.93 -0.42 0.74 16 36 H 0.12 0.99 8.05 -51.93 -0.42 0.57 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -28.70 311.61 -8.26 -36.96 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.37 Total: 4.25 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.99 Total: -12.06 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.11 Total: -35.16 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.31 Total: -12.46 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.23 Total: 19.03 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -2.94 Total: -5.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.70 -8.26 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830006369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.684 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds