Wall clock time and date at job start Tue Mar 31 2020 07:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 115.56506 * 2 1 4 4 N 1.46902 * 109.47084 * 325.68724 * 3 2 1 5 5 C 1.47844 * 110.99892 * 290.84122 * 4 3 2 6 6 C 1.54909 * 104.79711 * 213.63647 * 5 4 3 7 7 C 1.55140 * 101.65187 * 37.07252 * 6 5 4 8 8 O 1.42897 * 110.70527 * 82.72997 * 7 6 5 9 9 C 1.50696 * 110.85276 * 205.89495 * 7 6 5 10 10 H 1.08004 * 120.00316 * 20.83475 * 9 7 6 11 11 C 1.37877 * 119.99792 * 200.84228 * 9 7 6 12 12 N 1.31517 * 120.00042 * 173.62400 * 11 9 7 13 13 Si 1.86802 * 120.00141 * 353.62538 * 11 9 7 14 14 H 1.48496 * 109.47383 * 86.33732 * 13 11 9 15 15 H 1.48494 * 109.47251 * 206.33863 * 13 11 9 16 16 H 1.48503 * 109.46891 * 326.33950 * 13 11 9 17 17 C 1.47446 * 111.00014 * 170.00291 * 4 3 2 18 18 C 1.53005 * 117.49480 * 214.30639 * 2 1 3 19 19 C 1.53002 * 60.00006 * 252.51321 * 18 2 1 20 20 Cl 1.80303 * 117.50182 * 252.51070 * 19 18 2 21 21 Cl 1.80307 * 117.49738 * 107.48905 * 19 18 2 22 22 H 1.08999 * 109.47050 * 274.31706 * 1 2 3 23 23 H 1.09001 * 109.46895 * 34.30902 * 1 2 3 24 24 H 1.08997 * 109.47444 * 154.31164 * 1 2 3 25 25 H 1.09000 * 109.47570 * 85.68383 * 3 2 1 26 26 H 1.09004 * 109.47100 * 205.69105 * 3 2 1 27 27 H 1.09001 * 110.37590 * 332.47080 * 5 4 3 28 28 H 1.09001 * 110.37436 * 94.80890 * 5 4 3 29 29 H 1.08997 * 110.98869 * 278.98171 * 6 5 4 30 30 H 1.09000 * 110.99046 * 155.16821 * 6 5 4 31 31 H 0.96702 * 114.00240 * 61.05720 * 8 7 6 32 32 H 0.97000 * 119.99876 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.88514 * 242.66330 * 17 4 3 34 34 H 1.08999 * 109.88524 * 3.85057 * 17 4 3 35 35 H 1.08995 * 117.49406 * 145.02507 * 18 2 1 36 36 H 1.08997 * 117.50088 * 0.02562 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 7 1.3696 2.3155 -0.7807 5 6 1.4078 1.9798 -2.2201 6 6 1.3176 3.3446 -2.9472 7 6 2.1618 4.2528 -2.0149 8 8 3.5547 4.1183 -2.3045 9 6 1.7312 5.6920 -2.1342 10 1 0.7519 5.9324 -2.5209 11 6 2.5876 6.7019 -1.7498 12 7 2.2640 7.9576 -1.9693 13 14 4.2074 6.2866 -0.9172 14 1 5.2440 6.0329 -1.9497 15 1 4.6297 7.4240 -0.0609 16 1 4.0362 5.0728 -0.0790 17 6 1.8411 3.7020 -0.6095 18 6 2.2364 -1.1211 -0.7650 19 6 2.2364 -1.1210 0.7651 20 17 3.7831 -0.7145 1.5976 21 17 1.2020 -2.3408 1.5976 22 1 -0.3633 0.0774 1.0247 23 1 -0.3633 0.8489 -0.5793 24 1 -0.3634 -0.9261 -0.4454 25 1 2.2773 1.7413 1.0247 26 1 3.1825 1.3082 -0.4455 27 1 2.3435 1.4787 -2.4681 28 1 0.5578 1.3513 -2.4858 29 1 0.2856 3.6913 -3.0002 30 1 1.7600 3.2871 -3.9417 31 1 3.7956 4.3738 -3.2055 32 1 2.8667 8.6680 -1.6992 33 1 1.0606 4.3043 -0.1444 34 1 2.7395 3.7145 0.0076 35 1 3.1714 -0.8753 -1.2682 36 1 1.6111 -1.8584 -1.2685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830006369.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:23 Heat of formation + Delta-G solvation = -46.452930 kcal Electronic energy + Delta-G solvation = -20182.523726 eV Core-core repulsion = 16946.652063 eV Total energy + Delta-G solvation = -3235.871663 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75461 -39.28655 -37.10394 -37.01504 -36.07990 -34.43793 -31.96732 -30.07536 -29.30684 -27.41787 -25.67027 -23.28870 -22.19375 -21.40513 -20.16633 -19.27930 -17.51242 -17.17417 -16.86877 -16.34329 -16.10154 -15.65981 -15.20576 -14.76788 -14.32430 -14.25760 -14.08015 -13.81300 -13.61770 -13.33320 -13.12199 -12.83576 -12.57121 -12.54328 -12.38524 -12.26584 -12.14152 -12.13454 -11.96476 -11.86441 -11.81709 -11.20065 -10.99770 -10.66740 -10.56815 -10.31317 -9.22572 -8.34569 -6.45338 0.18269 1.19903 1.44035 1.47473 1.65832 2.16785 2.40760 2.89627 3.00083 3.28016 3.42325 3.54270 3.79666 4.04903 4.11532 4.30181 4.45211 4.53034 4.56448 4.62588 4.70070 4.78776 4.88104 4.99833 5.04916 5.10217 5.15123 5.33365 5.42970 5.52785 5.61711 5.99648 6.09336 6.19528 6.62753 7.01113 7.33131 8.79121 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.004621 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.670631 B = 6058.255954 C = 6582.588026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 C 0.087 3.913 4 N -0.520 5.520 5 C 0.054 3.946 6 C -0.138 4.138 7 C 0.202 3.798 8 O -0.571 6.571 9 C -0.544 4.544 10 H 0.043 0.957 11 C 0.027 3.973 12 N -0.939 5.939 13 Si 0.996 3.004 14 H -0.280 1.280 15 H -0.335 1.335 16 H -0.263 1.263 17 C 0.058 3.942 18 C -0.124 4.124 19 C -0.002 4.002 20 Cl -0.112 7.112 21 Cl -0.096 7.096 22 H 0.059 0.941 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.380 0.620 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.123 0.877 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -21.869 2.284 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.041 4.041 4 N -0.243 5.243 5 C -0.073 4.073 6 C -0.176 4.176 7 C 0.161 3.839 8 O -0.380 6.380 9 C -0.582 4.582 10 H 0.061 0.939 11 C -0.173 4.173 12 N -0.577 5.577 13 Si 0.829 3.171 14 H -0.207 1.207 15 H -0.267 1.267 16 H -0.189 1.189 17 C -0.070 4.070 18 C -0.161 4.161 19 C -0.054 4.054 20 Cl -0.085 7.085 21 Cl -0.069 7.069 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.230 0.770 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.141 0.859 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.784 -22.029 3.233 22.279 hybrid contribution 1.625 0.888 -0.072 1.853 sum 0.840 -21.141 3.161 21.393 Atomic orbital electron populations 1.21381 0.88689 1.03684 1.02983 1.22311 0.97605 0.89676 0.98192 1.21767 0.93610 0.90222 0.98542 1.63631 1.50778 1.01160 1.08772 1.23046 1.01338 0.96531 0.86355 1.23160 1.00613 0.95063 0.98809 1.20291 0.78484 0.92594 0.92491 1.86086 1.27056 1.88621 1.36237 1.21578 1.02072 0.90864 1.43681 0.93906 1.25799 1.02179 0.94382 0.94901 1.70088 1.39304 1.00546 1.47794 0.84978 0.79143 0.74780 0.78180 1.20691 1.26728 1.18867 1.23031 0.98081 0.88699 0.97141 1.24365 1.04055 0.99895 0.87776 1.27193 0.87039 0.98715 0.92471 1.98749 1.34348 1.93634 1.81817 1.98733 1.68195 1.58366 1.81586 0.92157 0.89603 0.90741 0.91270 0.94168 0.93061 0.88541 0.91589 0.90298 0.77034 0.92589 0.90963 0.93995 0.85925 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 8.70 71.98 0.63 -1.51 16 2 C -0.08 -1.57 2.01 -52.18 -0.11 -1.68 16 3 C 0.09 2.37 3.75 86.30 0.32 2.70 16 4 N -0.52 -16.17 3.83 -885.54 -3.39 -19.56 16 5 C 0.05 1.50 5.83 86.77 0.51 2.00 16 6 C -0.14 -4.72 6.23 31.98 0.20 -4.52 16 7 C 0.20 8.53 0.68 -10.36 -0.01 8.52 16 8 O -0.57 -23.16 8.88 -148.98 -1.32 -24.48 16 9 C -0.54 -29.11 8.71 25.60 0.22 -28.88 16 10 H 0.04 2.55 7.99 -2.91 -0.02 2.53 16 11 C 0.03 1.51 5.46 84.65 0.46 1.97 16 12 N -0.94 -57.25 13.96 21.45 0.30 -56.95 16 13 Si 1.00 48.23 24.90 68.60 1.71 49.94 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.34 -16.81 7.11 99.48 0.71 -16.10 16 16 H -0.26 -12.37 5.18 99.48 0.52 -11.85 16 17 C 0.06 2.34 5.64 86.65 0.49 2.83 16 18 C -0.12 -1.99 9.50 30.60 0.29 -1.70 16 19 C 0.00 -0.05 3.61 30.60 0.11 0.06 16 20 Cl -0.11 -2.59 28.32 -2.72 -0.08 -2.67 16 21 Cl -0.10 -1.85 28.32 -2.72 -0.08 -1.92 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.09 1.88 5.95 -2.39 -0.01 1.87 16 24 H 0.07 1.14 7.90 -2.39 -0.02 1.12 16 25 H 0.07 2.05 8.03 -2.39 -0.02 2.03 16 26 H 0.04 1.15 7.61 -2.39 -0.02 1.13 16 27 H 0.05 1.33 7.62 -2.39 -0.02 1.32 16 28 H 0.10 2.19 7.54 -2.39 -0.02 2.17 16 29 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.38 13.56 9.07 -74.06 -0.67 12.89 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.07 3.16 7.82 -2.39 -0.02 3.14 16 34 H 0.04 1.77 5.70 -2.39 -0.01 1.76 16 35 H 0.12 1.90 8.05 -2.39 -0.02 1.88 16 36 H 0.14 1.65 8.05 -2.39 -0.02 1.63 16 Total: -1.00 -62.48 311.61 0.48 -62.00 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.23 Total: 13.86 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.12 Total: -20.20 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -3.09 Total: -76.51 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.32 Total: -24.48 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 1.71 Total: 49.94 kcal Atomic # 17 Polarization: -4.44 SS G_CDS: -0.15 Total: -4.59 kcal Total: -62.48 0.48 -62.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830006369.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.544 kcal (2) G-P(sol) polarization free energy of solvation -62.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds