Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48502 * 109.46948 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47509 * 240.00322 * 3 2 1 6 6 H 1.48506 * 109.46941 * 119.99763 * 3 2 1 7 7 C 1.37878 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 187.17205 * 7 2 1 9 9 C 1.50690 * 119.99879 * 7.16808 * 7 2 1 10 10 O 1.42892 * 110.29026 * 56.88598 * 9 7 2 11 11 C 1.54268 * 110.32500 * 294.75760 * 9 7 2 12 12 C 1.54381 * 105.05823 * 241.10232 * 11 9 7 13 13 N 1.48558 * 104.59581 * 23.85496 * 12 11 9 14 14 C 1.46899 * 110.99626 * 200.95499 * 13 12 11 15 15 C 1.53003 * 109.47538 * 290.12467 * 14 13 12 16 16 C 1.52996 * 109.47517 * 180.02562 * 15 14 13 17 17 H 1.09007 * 115.54733 * 29.32747 * 16 15 14 18 18 C 1.52998 * 117.49886 * 175.00309 * 16 15 14 19 19 C 1.53002 * 117.49731 * 243.62627 * 16 15 14 20 20 Cl 1.80302 * 117.49846 * 359.97438 * 19 16 15 21 21 Cl 1.80300 * 117.50100 * 145.01759 * 19 16 15 22 22 C 1.48552 * 104.22199 * 320.51175 * 13 12 11 23 23 H 0.96997 * 120.00108 * 182.84723 * 1 2 3 24 24 H 0.96698 * 114.00293 * 294.06658 * 10 9 7 25 25 H 1.09000 * 110.32297 * 0.02562 * 11 9 7 26 26 H 1.08999 * 110.32057 * 122.10814 * 11 9 7 27 27 H 1.09005 * 110.40302 * 142.63378 * 12 11 9 28 28 H 1.08999 * 110.41540 * 265.06948 * 12 11 9 29 29 H 1.08994 * 109.47450 * 50.12667 * 14 13 12 30 30 H 1.09004 * 109.46731 * 170.12512 * 14 13 12 31 31 H 1.09004 * 109.46890 * 300.00508 * 15 14 13 32 32 H 1.08997 * 109.46667 * 60.00184 * 15 14 13 33 33 H 1.09003 * 117.49208 * 214.97696 * 18 16 15 34 34 H 1.08990 * 117.50091 * 359.97257 * 18 16 15 35 35 H 1.08999 * 110.41306 * 280.70597 * 22 13 12 36 36 H 1.09007 * 110.41285 * 158.25885 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6966 -1.2125 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1162 9 6 1.2599 -2.4939 -0.1640 10 8 0.5048 -2.4832 -1.3770 11 6 0.3306 -2.7345 1.0436 12 6 0.8335 -4.0475 1.6814 13 7 2.2529 -4.1509 1.2554 14 6 2.7301 -5.5373 1.3464 15 6 2.8486 -5.9404 2.8176 16 6 3.3461 -7.3841 2.9125 17 1 3.9824 -7.7168 2.0923 18 6 3.6432 -7.9387 4.3071 19 6 2.4069 -8.4151 3.5417 20 17 0.7988 -7.8355 4.1153 21 17 2.4370 -10.0880 2.8699 22 6 2.2461 -3.6817 -0.1541 23 1 -0.4850 -0.8390 0.0417 24 1 -0.2141 -1.8366 -1.3871 25 1 0.4127 -1.9122 1.7543 26 1 -0.7015 -2.8445 0.7110 27 1 0.7656 -3.9925 2.7679 28 1 0.2611 -4.8959 1.3063 29 1 2.0238 -6.1984 0.8444 30 1 3.7061 -5.6177 0.8679 31 1 3.5549 -5.2792 3.3197 32 1 1.8725 -5.8599 3.2961 33 1 4.4747 -8.6367 4.4044 34 1 3.4846 -7.2750 5.1569 35 1 1.8948 -4.4729 -0.8165 36 1 3.2419 -3.3514 -0.4497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830007157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = -36.721364 kcal Electronic energy + Delta-G solvation = -19528.440897 eV Core-core repulsion = 16292.991226 eV Total energy + Delta-G solvation = -3235.449671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.98822 -38.21963 -36.28582 -36.02103 -35.19011 -32.14322 -31.47922 -28.57532 -27.57884 -24.25342 -23.05120 -22.61623 -20.94007 -20.30523 -19.46214 -17.68139 -16.77778 -15.88914 -15.32260 -15.00548 -14.30402 -14.00068 -13.79770 -13.48551 -13.11098 -12.99924 -12.90225 -12.67574 -12.06884 -11.91318 -11.65973 -11.45588 -11.41186 -11.23014 -11.03816 -10.86194 -10.65837 -10.50649 -10.44682 -10.34572 -10.24288 -10.08106 -9.96235 -9.16845 -8.51958 -8.02771 -7.94083 -6.42207 -4.19192 0.92998 1.93437 2.91665 3.42402 3.44030 3.62647 3.85847 3.97754 4.41364 4.47941 4.82637 4.95965 5.12366 5.19047 5.24595 5.39795 5.49891 5.57943 5.74002 5.82693 5.88828 6.00681 6.09458 6.16140 6.30081 6.34769 6.60814 6.83670 6.97052 7.24102 7.44475 7.60309 8.03433 8.35709 8.73081 9.07411 9.51115 10.89562 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.031616 B = 0.003396 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.415764 B = 8243.514798 C = 8324.205234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.595 4.595 8 H 0.057 0.943 9 C 0.231 3.769 10 O -0.592 6.592 11 C -0.144 4.144 12 C 0.039 3.961 13 N -0.499 5.499 14 C 0.048 3.952 15 C -0.098 4.098 16 C -0.107 4.107 17 H 0.129 0.871 18 C -0.142 4.142 19 C -0.004 4.004 20 Cl -0.088 7.088 21 Cl -0.102 7.102 22 C 0.060 3.940 23 H 0.267 0.733 24 H 0.369 0.631 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.031 0.969 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -16.466 8.508 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.633 4.633 8 H 0.075 0.925 9 C 0.192 3.808 10 O -0.400 6.400 11 C -0.183 4.183 12 C -0.089 4.089 13 N -0.223 5.223 14 C -0.081 4.081 15 C -0.136 4.136 16 C -0.127 4.127 17 H 0.147 0.853 18 C -0.180 4.180 19 C -0.056 4.056 20 Cl -0.061 7.061 21 Cl -0.075 7.075 22 C -0.067 4.067 23 H 0.080 0.920 24 H 0.218 0.782 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.049 0.951 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.976 -15.083 8.633 18.378 hybrid contribution -0.913 -2.049 -0.235 2.255 sum 5.064 -17.132 8.399 19.740 Atomic orbital electron populations 1.70941 1.06867 1.30412 1.47118 1.25870 0.96432 1.02831 0.92603 0.83542 0.74964 0.75136 0.76642 1.20806 1.21351 1.21339 1.22379 0.95510 0.91590 1.53861 0.92482 1.19529 0.87352 0.93475 0.80464 1.86255 1.49571 1.63026 1.41120 1.23214 0.98170 0.96098 1.00839 1.23048 0.88480 0.97675 0.99725 1.65305 1.19358 1.17899 1.19771 1.22203 1.00417 0.90127 0.95352 1.21380 1.03038 0.90891 0.98253 1.23344 0.97424 0.94525 0.97372 0.85339 1.24007 0.94874 1.02223 0.96852 1.26948 0.84946 0.86026 1.07650 1.98751 1.30252 1.87874 1.89242 1.98745 1.98170 1.24111 1.86458 1.22895 1.00441 0.96217 0.87166 0.92019 0.78153 0.90448 0.93276 0.91387 0.95088 0.95019 0.90970 0.89301 0.90078 0.86253 0.86078 0.95106 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.90 12.76 55.43 0.71 -25.19 16 2 C 0.03 0.72 5.12 -17.82 -0.09 0.63 16 3 Si 1.07 24.62 29.91 -169.99 -5.08 19.53 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.60 -16.38 8.03 -34.44 -0.28 -16.66 16 8 H 0.06 1.59 7.57 -52.49 -0.40 1.19 16 9 C 0.23 5.78 1.03 -90.39 -0.09 5.69 16 10 O -0.59 -15.41 12.91 -35.23 -0.45 -15.86 16 11 C -0.14 -3.31 4.72 -25.34 -0.12 -3.43 16 12 C 0.04 0.74 5.74 -2.18 -0.01 0.73 16 13 N -0.50 -9.46 5.37 -229.97 -1.24 -10.69 16 14 C 0.05 0.70 4.77 -3.82 -0.02 0.68 16 15 C -0.10 -1.16 5.47 -26.73 -0.15 -1.30 16 16 C -0.11 -0.99 5.58 -90.62 -0.51 -1.50 16 17 H 0.13 1.08 8.08 -51.93 -0.42 0.66 16 18 C -0.14 -1.06 9.93 -26.73 -0.27 -1.33 16 19 C 0.00 -0.04 3.62 -26.73 -0.10 -0.14 16 20 Cl -0.09 -1.00 27.27 -51.86 -1.41 -2.42 16 21 Cl -0.10 -1.02 29.29 -51.86 -1.52 -2.54 16 22 C 0.06 1.32 5.76 -2.18 -0.01 1.30 16 23 H 0.27 7.34 4.39 -40.82 -0.18 7.16 16 24 H 0.37 9.51 6.65 45.56 0.30 9.81 16 25 H 0.08 1.95 7.31 -51.93 -0.38 1.57 16 26 H 0.05 1.10 7.72 -51.93 -0.40 0.70 16 27 H 0.07 1.21 7.76 -51.93 -0.40 0.80 16 28 H 0.03 0.57 7.82 -51.93 -0.41 0.16 16 29 H 0.03 0.47 7.88 -51.93 -0.41 0.07 16 30 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.03 5.17 -51.93 -0.27 0.76 16 33 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.08 1.75 7.69 -51.93 -0.40 1.35 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -29.34 317.14 -10.12 -39.45 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.26 Total: 8.26 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.64 Total: -15.33 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.53 Total: -35.88 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.45 Total: -15.86 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -2.93 Total: -4.96 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.34 -10.12 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830007157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.733 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds