Wall clock time and date at job start Tue Mar 31 2020 07:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48502 * 109.46948 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47509 * 240.00322 * 3 2 1 6 6 H 1.48506 * 109.46941 * 119.99763 * 3 2 1 7 7 C 1.37878 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 187.17205 * 7 2 1 9 9 C 1.50690 * 119.99879 * 7.16808 * 7 2 1 10 10 O 1.42892 * 110.29026 * 56.88598 * 9 7 2 11 11 C 1.54268 * 110.32500 * 294.75760 * 9 7 2 12 12 C 1.54381 * 105.05823 * 241.10232 * 11 9 7 13 13 N 1.48558 * 104.59581 * 23.85496 * 12 11 9 14 14 C 1.46899 * 110.99626 * 200.95499 * 13 12 11 15 15 C 1.53003 * 109.47538 * 290.12467 * 14 13 12 16 16 C 1.52996 * 109.47517 * 180.02562 * 15 14 13 17 17 H 1.09007 * 115.54733 * 29.32747 * 16 15 14 18 18 C 1.52998 * 117.49886 * 175.00309 * 16 15 14 19 19 C 1.53002 * 117.49731 * 243.62627 * 16 15 14 20 20 Cl 1.80302 * 117.49846 * 359.97438 * 19 16 15 21 21 Cl 1.80300 * 117.50100 * 145.01759 * 19 16 15 22 22 C 1.48552 * 104.22199 * 320.51175 * 13 12 11 23 23 H 0.96997 * 120.00108 * 182.84723 * 1 2 3 24 24 H 0.96698 * 114.00293 * 294.06658 * 10 9 7 25 25 H 1.09000 * 110.32297 * 0.02562 * 11 9 7 26 26 H 1.08999 * 110.32057 * 122.10814 * 11 9 7 27 27 H 1.09005 * 110.40302 * 142.63378 * 12 11 9 28 28 H 1.08999 * 110.41540 * 265.06948 * 12 11 9 29 29 H 1.08994 * 109.47450 * 50.12667 * 14 13 12 30 30 H 1.09004 * 109.46731 * 170.12512 * 14 13 12 31 31 H 1.09004 * 109.46890 * 300.00508 * 15 14 13 32 32 H 1.08997 * 109.46667 * 60.00184 * 15 14 13 33 33 H 1.09003 * 117.49208 * 214.97696 * 18 16 15 34 34 H 1.08990 * 117.50091 * 359.97257 * 18 16 15 35 35 H 1.08999 * 110.41306 * 280.70597 * 22 13 12 36 36 H 1.09007 * 110.41285 * 158.25885 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6966 -1.2125 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1162 9 6 1.2599 -2.4939 -0.1640 10 8 0.5048 -2.4832 -1.3770 11 6 0.3306 -2.7345 1.0436 12 6 0.8335 -4.0475 1.6814 13 7 2.2529 -4.1509 1.2554 14 6 2.7301 -5.5373 1.3464 15 6 2.8486 -5.9404 2.8176 16 6 3.3461 -7.3841 2.9125 17 1 3.9824 -7.7168 2.0923 18 6 3.6432 -7.9387 4.3071 19 6 2.4069 -8.4151 3.5417 20 17 0.7988 -7.8355 4.1153 21 17 2.4370 -10.0880 2.8699 22 6 2.2461 -3.6817 -0.1541 23 1 -0.4850 -0.8390 0.0417 24 1 -0.2141 -1.8366 -1.3871 25 1 0.4127 -1.9122 1.7543 26 1 -0.7015 -2.8445 0.7110 27 1 0.7656 -3.9925 2.7679 28 1 0.2611 -4.8959 1.3063 29 1 2.0238 -6.1984 0.8444 30 1 3.7061 -5.6177 0.8679 31 1 3.5549 -5.2792 3.3197 32 1 1.8725 -5.8599 3.2961 33 1 4.4747 -8.6367 4.4044 34 1 3.4846 -7.2750 5.1569 35 1 1.8948 -4.4729 -0.8165 36 1 3.2419 -3.3514 -0.4497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830007157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:04 Heat of formation + Delta-G solvation = -55.776971 kcal Electronic energy + Delta-G solvation = -19529.267210 eV Core-core repulsion = 16292.991226 eV Total energy + Delta-G solvation = -3236.275984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48130 -39.22810 -37.32714 -37.02988 -36.43009 -34.22408 -32.87366 -30.18396 -29.23052 -26.19516 -24.38231 -23.27304 -22.04371 -21.75390 -21.14067 -19.73068 -17.60519 -17.32809 -16.64049 -16.38824 -15.91312 -15.62756 -15.42836 -14.88508 -14.65394 -14.28187 -14.08399 -13.65833 -13.44930 -13.23809 -12.97518 -12.74863 -12.64283 -12.44509 -12.34795 -12.27976 -12.21587 -12.12526 -12.01764 -11.91638 -11.52754 -11.24692 -11.08571 -10.71215 -10.59216 -10.05397 -9.45485 -8.58537 -6.37249 0.19713 1.18536 1.55995 1.61974 1.82207 2.23466 2.56817 2.82056 3.11499 3.16143 3.41297 3.76186 3.88164 3.98367 4.15010 4.16778 4.19826 4.32197 4.42400 4.56521 4.62173 4.66163 4.71865 4.81386 4.87704 5.01551 5.04794 5.14609 5.25707 5.36450 5.81505 5.97595 6.11144 6.19759 6.58963 7.02800 7.40010 8.74457 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.031616 B = 0.003396 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.415764 B = 8243.514798 C = 8324.205234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.017 4.017 3 Si 1.113 2.887 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.613 4.613 8 H 0.047 0.953 9 C 0.212 3.788 10 O -0.600 6.600 11 C -0.137 4.137 12 C 0.050 3.950 13 N -0.505 5.505 14 C 0.047 3.953 15 C -0.090 4.090 16 C -0.108 4.108 17 H 0.141 0.859 18 C -0.118 4.118 19 C -0.017 4.017 20 Cl -0.108 7.108 21 Cl -0.107 7.107 22 C 0.068 3.932 23 H 0.262 0.738 24 H 0.366 0.634 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.034 0.966 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.973 -17.441 9.460 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.651 4.651 8 H 0.065 0.935 9 C 0.172 3.828 10 O -0.407 6.407 11 C -0.176 4.176 12 C -0.078 4.078 13 N -0.230 5.230 14 C -0.081 4.081 15 C -0.127 4.127 16 C -0.128 4.128 17 H 0.158 0.842 18 C -0.155 4.155 19 C -0.068 4.068 20 Cl -0.081 7.081 21 Cl -0.080 7.080 22 C -0.060 4.060 23 H 0.075 0.925 24 H 0.215 0.785 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.148 0.852 35 H 0.052 0.948 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.430 -16.092 9.593 20.154 hybrid contribution -1.355 -1.784 -0.552 2.307 sum 6.075 -17.876 9.041 20.933 Atomic orbital electron populations 1.71011 1.07517 1.30353 1.48361 1.27109 0.96631 1.05996 0.91854 0.82976 0.74215 0.71687 0.77607 1.20911 1.20174 1.19773 1.22650 0.95258 0.93158 1.54032 0.93460 1.19812 0.88253 0.94045 0.80646 1.86242 1.49573 1.62845 1.42071 1.23002 0.97818 0.97233 0.99581 1.22952 0.88718 0.95757 1.00402 1.65286 1.19050 1.21022 1.17612 1.22331 1.00692 0.87423 0.97609 1.21252 1.02898 0.92661 0.95924 1.23271 0.97536 0.92745 0.99219 0.84159 1.24174 0.93881 1.01618 0.95861 1.27157 0.84678 0.85878 1.09077 1.98749 1.31836 1.88070 1.89420 1.98746 1.98125 1.24456 1.86637 1.22722 0.99003 0.95137 0.89147 0.92506 0.78527 0.93232 0.93578 0.89718 0.94021 0.95116 0.89696 0.89027 0.90903 0.83984 0.85173 0.94814 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.52 12.76 21.45 0.27 -53.25 16 2 C -0.02 -0.94 5.12 84.66 0.43 -0.51 16 3 Si 1.11 49.42 29.91 68.60 2.05 51.47 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.61 -34.06 8.03 25.60 0.21 -33.85 16 8 H 0.05 2.65 7.57 -2.91 -0.02 2.63 16 9 C 0.21 10.68 1.03 -10.64 -0.01 10.67 16 10 O -0.60 -31.69 12.91 -148.98 -1.92 -33.62 16 11 C -0.14 -6.36 4.72 31.49 0.15 -6.21 16 12 C 0.05 1.85 5.74 86.45 0.50 2.34 16 13 N -0.51 -18.50 5.37 -881.49 -4.73 -23.23 16 14 C 0.05 1.29 4.77 86.30 0.41 1.70 16 15 C -0.09 -1.90 5.47 30.59 0.17 -1.73 16 16 C -0.11 -1.69 5.58 -10.79 -0.06 -1.75 16 17 H 0.14 1.90 8.08 -2.38 -0.02 1.88 16 18 C -0.12 -1.37 9.93 30.59 0.30 -1.07 16 19 C -0.02 -0.29 3.62 30.60 0.11 -0.18 16 20 Cl -0.11 -2.28 27.27 -2.72 -0.07 -2.36 16 21 Cl -0.11 -1.94 29.29 -2.72 -0.08 -2.02 16 22 C 0.07 2.93 5.76 86.45 0.50 3.43 16 23 H 0.26 14.80 4.39 -92.71 -0.41 14.40 16 24 H 0.37 19.36 6.65 -74.06 -0.49 18.87 16 25 H 0.05 2.53 7.31 -2.39 -0.02 2.51 16 26 H 0.05 2.10 7.72 -2.39 -0.02 2.08 16 27 H 0.08 2.88 7.76 -2.38 -0.02 2.86 16 28 H 0.04 1.47 7.82 -2.39 -0.02 1.45 16 29 H 0.03 0.85 7.88 -2.39 -0.02 0.83 16 30 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 1.69 5.17 -2.39 -0.01 1.68 16 33 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.03 1.41 7.94 -2.39 -0.02 1.39 16 36 H 0.07 3.17 7.69 -2.38 -0.02 3.16 16 Total: -1.00 -62.74 317.14 -0.82 -63.57 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.96 Total: 26.59 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 2.70 Total: -27.16 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -4.46 Total: -76.48 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.92 Total: -33.62 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Atomic # 17 Polarization: -4.22 SS G_CDS: -0.15 Total: -4.37 kcal Total: -62.74 -0.82 -63.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830007157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.788 kcal (2) G-P(sol) polarization free energy of solvation -62.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds