Wall clock time and date at job start Tue Mar 31 2020 07:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47231 * 300.00028 * 3 2 1 6 6 H 1.48502 * 109.47325 * 60.00340 * 3 2 1 7 7 C 1.37881 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00069 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.90407 * 297.59181 * 9 7 2 11 11 C 1.55138 * 110.98972 * 61.45878 * 9 7 2 12 12 C 1.54322 * 103.01844 * 153.74363 * 11 9 7 13 13 N 1.47434 * 107.23429 * 337.71764 * 12 11 9 14 14 C 1.46905 * 110.99777 * 236.74173 * 13 12 11 15 15 C 1.53002 * 109.46977 * 174.89573 * 14 13 12 16 16 C 1.53001 * 109.47263 * 174.70450 * 15 14 13 17 17 H 1.09002 * 115.54745 * 330.59013 * 16 15 14 18 18 C 1.52999 * 117.49469 * 116.25091 * 16 15 14 19 19 C 1.52990 * 117.50174 * 184.91375 * 16 15 14 20 20 Cl 1.80300 * 117.49976 * 0.02562 * 19 16 15 21 21 Cl 1.80301 * 117.49876 * 145.00244 * 19 16 15 22 22 C 1.47848 * 108.56839 * 359.00819 * 13 12 11 23 23 H 0.96991 * 119.99822 * 359.97438 * 1 2 3 24 24 H 0.96697 * 114.00095 * 62.41214 * 10 9 7 25 25 H 1.09001 * 110.70607 * 35.35874 * 11 9 7 26 26 H 1.09005 * 110.70511 * 272.12623 * 11 9 7 27 27 H 1.09001 * 109.88824 * 97.12636 * 12 11 9 28 28 H 1.09000 * 109.88749 * 218.14200 * 12 11 9 29 29 H 1.08994 * 109.46866 * 294.89863 * 14 13 12 30 30 H 1.08998 * 109.47018 * 54.90419 * 14 13 12 31 31 H 1.08997 * 109.47438 * 294.70949 * 15 14 13 32 32 H 1.09002 * 109.46890 * 54.71488 * 15 14 13 33 33 H 1.08997 * 117.50034 * 214.97941 * 18 16 15 34 34 H 1.09001 * 117.49982 * 0.02562 * 18 16 15 35 35 H 1.09000 * 110.37538 * 142.92333 * 22 13 12 36 36 H 1.09004 * 110.37393 * 265.15944 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4611 -2.6319 1.1829 11 6 0.3734 -2.6341 -1.2726 12 6 0.2532 -4.1622 -1.4516 13 7 1.3917 -4.7758 -0.7438 14 6 2.1854 -5.6150 -1.6515 15 6 3.4245 -6.1305 -0.9168 16 6 4.1813 -7.1088 -1.8174 17 1 3.5689 -7.6627 -2.5289 18 6 5.5939 -6.7171 -2.2559 19 6 5.3934 -7.8261 -1.2199 20 17 5.8203 -7.4544 0.4919 21 17 5.6995 -9.5231 -1.7466 22 6 2.2186 -3.6985 -0.1592 23 1 -0.4849 0.8400 0.0004 24 1 -0.2248 -1.9566 1.2757 25 1 0.8690 -2.1832 -2.1324 26 1 -0.6076 -2.1864 -1.1133 27 1 -0.6843 -4.5134 -1.0204 28 1 0.2917 -4.4157 -2.5110 29 1 1.5830 -6.4598 -1.9851 30 1 2.4941 -5.0253 -2.5147 31 1 4.0734 -5.2915 -0.6656 32 1 3.1192 -6.6400 -0.0028 33 1 5.9110 -7.0138 -3.2556 34 1 5.9841 -5.7627 -1.9024 35 1 2.6075 -4.0034 0.8123 36 1 3.0373 -3.4414 -0.8314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830007158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:06 Heat of formation + Delta-G solvation = -39.184335 kcal Electronic energy + Delta-G solvation = -19493.749544 eV Core-core repulsion = 16258.193071 eV Total energy + Delta-G solvation = -3235.556473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.88462 -38.00511 -36.19199 -35.86103 -34.69845 -32.13794 -31.33972 -28.27188 -27.77545 -24.97179 -22.89853 -22.28910 -20.80349 -20.01886 -19.32355 -17.06319 -16.58575 -15.67160 -15.09965 -14.88011 -14.55239 -14.35901 -13.80017 -13.30886 -13.14304 -12.63726 -12.46364 -12.38593 -12.03457 -11.74853 -11.52751 -11.35894 -11.27580 -11.17254 -11.08765 -10.98598 -10.83132 -10.68466 -10.40081 -10.30775 -10.26656 -9.93554 -9.76886 -9.18551 -8.60786 -8.07849 -7.60120 -6.21940 -4.30093 1.00673 2.02389 3.00486 3.19672 3.28703 3.32470 3.93013 4.13399 4.28297 4.56598 4.90213 5.05312 5.09408 5.31968 5.35566 5.46032 5.63607 5.71651 5.84283 5.88640 6.07693 6.14503 6.22271 6.33613 6.46505 6.67784 6.87011 7.06999 7.41131 7.48902 7.62346 7.76610 7.82440 8.16731 8.72560 9.38787 9.52277 10.84970 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.003562 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.612750 B = 7858.368004 C = 8318.628230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.250 3.750 10 O -0.579 6.579 11 C -0.144 4.144 12 C 0.044 3.956 13 N -0.528 5.528 14 C 0.056 3.944 15 C -0.095 4.095 16 C -0.105 4.105 17 H 0.128 0.872 18 C -0.144 4.144 19 C -0.002 4.002 20 Cl -0.089 7.089 21 Cl -0.105 7.105 22 C 0.059 3.941 23 H 0.266 0.734 24 H 0.376 0.624 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -13.524 -5.820 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.210 3.790 10 O -0.386 6.386 11 C -0.183 4.183 12 C -0.084 4.084 13 N -0.252 5.252 14 C -0.072 4.072 15 C -0.132 4.132 16 C -0.125 4.125 17 H 0.146 0.854 18 C -0.182 4.182 19 C -0.054 4.054 20 Cl -0.062 7.062 21 Cl -0.078 7.078 22 C -0.068 4.068 23 H 0.075 0.925 24 H 0.225 0.775 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.171 -14.368 -5.237 17.338 hybrid contribution 0.504 1.744 -0.781 1.977 sum 8.675 -12.623 -6.018 16.457 Atomic orbital electron populations 1.69748 1.05924 1.27253 1.50431 1.24999 0.94972 0.99392 0.93722 0.86446 0.80160 0.83148 0.77684 1.19692 1.20937 1.20771 1.21586 0.93541 0.90741 1.51534 0.92118 1.19553 0.86883 0.90687 0.81892 1.86149 1.51347 1.56643 1.44487 1.23256 1.02675 0.91820 1.00589 1.22818 0.94236 0.96271 0.95070 1.63654 1.08834 1.21603 1.31110 1.22191 0.93621 0.97351 0.94050 1.21381 0.96349 0.97399 0.98114 1.23339 0.90477 0.98760 0.99919 0.85416 1.24106 0.98702 0.97339 0.98036 1.26880 1.09075 0.84094 0.85308 1.98760 1.93932 1.93579 1.19913 1.98739 1.96484 1.22837 1.89695 1.23000 0.95094 0.90397 0.98274 0.92456 0.77475 0.92701 0.90431 0.91651 0.94592 0.91388 0.95106 0.90532 0.89460 0.86374 0.86024 0.91224 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 10.75 55.43 0.60 -23.05 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -14.18 8.27 -34.44 -0.28 -14.47 16 8 H 0.06 1.60 7.79 -52.48 -0.41 1.19 16 9 C 0.25 6.13 0.87 -89.63 -0.08 6.06 16 10 O -0.58 -15.09 13.16 -35.23 -0.46 -15.55 16 11 C -0.14 -3.27 5.37 -24.91 -0.13 -3.41 16 12 C 0.04 0.84 6.89 -2.84 -0.02 0.82 16 13 N -0.53 -9.90 5.28 -231.25 -1.22 -11.12 16 14 C 0.06 0.82 4.60 -3.82 -0.02 0.80 16 15 C -0.09 -1.20 4.24 -26.73 -0.11 -1.32 16 16 C -0.11 -1.05 5.57 -90.62 -0.51 -1.55 16 17 H 0.13 1.12 8.07 -51.93 -0.42 0.70 16 18 C -0.14 -1.26 9.87 -26.69 -0.26 -1.52 16 19 C 0.00 -0.02 3.62 -26.70 -0.10 -0.12 16 20 Cl -0.09 -1.05 28.23 -51.86 -1.46 -2.51 16 21 Cl -0.10 -1.06 29.29 -51.86 -1.52 -2.58 16 22 C 0.06 1.26 4.60 -2.30 -0.01 1.25 16 23 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 24 H 0.38 9.87 7.57 45.56 0.34 10.21 16 25 H 0.05 1.27 8.03 -51.93 -0.42 0.85 16 26 H 0.08 1.87 7.54 -51.93 -0.39 1.48 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.61 7.57 -51.93 -0.39 0.22 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.08 1.04 6.67 -51.93 -0.35 0.69 16 32 H 0.09 1.21 8.02 -51.93 -0.42 0.79 16 33 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.12 1.06 8.03 -51.93 -0.42 0.64 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.05 0.93 7.19 -51.93 -0.37 0.56 16 LS Contribution 322.19 15.07 4.86 4.86 Total: -1.00 -27.13 322.19 -10.34 -37.47 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.48 Total: 8.77 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.62 Total: -11.69 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: -0.62 Total: -34.17 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.46 Total: -15.55 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -2.98 Total: -5.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.13 -10.34 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830007158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.718 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds