Wall clock time and date at job start Tue Mar 31 2020 07:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46953 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47231 * 300.00028 * 3 2 1 6 6 H 1.48502 * 109.47325 * 60.00340 * 3 2 1 7 7 C 1.37881 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00069 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.90407 * 297.59181 * 9 7 2 11 11 C 1.55138 * 110.98972 * 61.45878 * 9 7 2 12 12 C 1.54322 * 103.01844 * 153.74363 * 11 9 7 13 13 N 1.47434 * 107.23429 * 337.71764 * 12 11 9 14 14 C 1.46905 * 110.99777 * 236.74173 * 13 12 11 15 15 C 1.53002 * 109.46977 * 174.89573 * 14 13 12 16 16 C 1.53001 * 109.47263 * 174.70450 * 15 14 13 17 17 H 1.09002 * 115.54745 * 330.59013 * 16 15 14 18 18 C 1.52999 * 117.49469 * 116.25091 * 16 15 14 19 19 C 1.52990 * 117.50174 * 184.91375 * 16 15 14 20 20 Cl 1.80300 * 117.49976 * 0.02562 * 19 16 15 21 21 Cl 1.80301 * 117.49876 * 145.00244 * 19 16 15 22 22 C 1.47848 * 108.56839 * 359.00819 * 13 12 11 23 23 H 0.96991 * 119.99822 * 359.97438 * 1 2 3 24 24 H 0.96697 * 114.00095 * 62.41214 * 10 9 7 25 25 H 1.09001 * 110.70607 * 35.35874 * 11 9 7 26 26 H 1.09005 * 110.70511 * 272.12623 * 11 9 7 27 27 H 1.09001 * 109.88824 * 97.12636 * 12 11 9 28 28 H 1.09000 * 109.88749 * 218.14200 * 12 11 9 29 29 H 1.08994 * 109.46866 * 294.89863 * 14 13 12 30 30 H 1.08998 * 109.47018 * 54.90419 * 14 13 12 31 31 H 1.08997 * 109.47438 * 294.70949 * 15 14 13 32 32 H 1.09002 * 109.46890 * 54.71488 * 15 14 13 33 33 H 1.08997 * 117.50034 * 214.97941 * 18 16 15 34 34 H 1.09001 * 117.49982 * 0.02562 * 18 16 15 35 35 H 1.09000 * 110.37538 * 142.92333 * 22 13 12 36 36 H 1.09004 * 110.37393 * 265.15944 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4611 -2.6319 1.1829 11 6 0.3734 -2.6341 -1.2726 12 6 0.2532 -4.1622 -1.4516 13 7 1.3917 -4.7758 -0.7438 14 6 2.1854 -5.6150 -1.6515 15 6 3.4245 -6.1305 -0.9168 16 6 4.1813 -7.1088 -1.8174 17 1 3.5689 -7.6627 -2.5289 18 6 5.5939 -6.7171 -2.2559 19 6 5.3934 -7.8261 -1.2199 20 17 5.8203 -7.4544 0.4919 21 17 5.6995 -9.5231 -1.7466 22 6 2.2186 -3.6985 -0.1592 23 1 -0.4849 0.8400 0.0004 24 1 -0.2248 -1.9566 1.2757 25 1 0.8690 -2.1832 -2.1324 26 1 -0.6076 -2.1864 -1.1133 27 1 -0.6843 -4.5134 -1.0204 28 1 0.2917 -4.4157 -2.5110 29 1 1.5830 -6.4598 -1.9851 30 1 2.4941 -5.0253 -2.5147 31 1 4.0734 -5.2915 -0.6656 32 1 3.1192 -6.6400 -0.0028 33 1 5.9110 -7.0138 -3.2556 34 1 5.9841 -5.7627 -1.9024 35 1 2.6075 -4.0034 0.8123 36 1 3.0373 -3.4414 -0.8314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830007158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:06 Heat of formation + Delta-G solvation = -56.285192 kcal Electronic energy + Delta-G solvation = -19494.491093 eV Core-core repulsion = 16258.193071 eV Total energy + Delta-G solvation = -3236.298022 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27506 -39.09048 -37.02750 -36.92974 -36.20427 -34.16858 -32.73857 -30.02167 -29.25191 -26.78156 -24.07413 -23.17583 -21.93270 -21.57166 -20.90780 -18.99816 -17.48058 -17.02148 -16.89202 -16.28125 -16.01548 -15.75479 -15.43914 -14.44290 -14.36770 -14.02650 -13.85390 -13.60553 -13.42248 -13.16589 -12.95917 -12.79710 -12.69027 -12.60241 -12.29804 -12.20961 -12.18684 -12.07389 -11.99841 -11.83508 -11.64859 -11.15062 -11.05812 -10.67288 -10.58605 -10.05171 -9.09008 -8.20659 -6.36353 0.21388 1.21707 1.38856 1.42780 1.52725 2.24074 2.38494 3.01998 3.07559 3.26666 3.41033 3.95970 4.00648 4.10792 4.20238 4.26031 4.39605 4.49062 4.56295 4.66447 4.71516 4.79272 4.89224 4.96237 5.07645 5.12241 5.29034 5.34130 5.51049 5.57779 5.82353 5.99282 6.25761 6.36769 6.70008 7.35463 7.47318 8.84606 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.003562 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.612750 B = 7858.368004 C = 8318.628230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.560 4.560 8 H 0.054 0.946 9 C 0.230 3.770 10 O -0.589 6.589 11 C -0.136 4.136 12 C 0.051 3.949 13 N -0.536 5.536 14 C 0.056 3.944 15 C -0.087 4.087 16 C -0.103 4.103 17 H 0.146 0.854 18 C -0.129 4.129 19 C -0.010 4.010 20 Cl -0.109 7.109 21 Cl -0.102 7.102 22 C 0.073 3.927 23 H 0.268 0.732 24 H 0.371 0.629 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.820 -14.203 -7.308 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.599 4.599 8 H 0.072 0.928 9 C 0.190 3.810 10 O -0.396 6.396 11 C -0.175 4.175 12 C -0.076 4.076 13 N -0.261 5.261 14 C -0.072 4.072 15 C -0.125 4.125 16 C -0.123 4.123 17 H 0.164 0.836 18 C -0.166 4.166 19 C -0.061 4.061 20 Cl -0.082 7.082 21 Cl -0.075 7.075 22 C -0.054 4.054 23 H 0.077 0.923 24 H 0.219 0.781 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.945 -15.066 -6.732 18.770 hybrid contribution 0.250 1.931 -0.319 1.973 sum 9.195 -13.134 -7.051 17.515 Atomic orbital electron populations 1.69835 1.06819 1.27970 1.50357 1.25677 0.95791 1.02185 0.93326 0.85526 0.79003 0.79485 0.77693 1.19490 1.20308 1.20647 1.21858 0.93478 0.92217 1.52308 0.92805 1.19859 0.87639 0.91546 0.81984 1.86143 1.51374 1.56407 1.45676 1.23050 1.00829 0.94369 0.99240 1.22730 0.94506 0.93530 0.96846 1.63596 1.09059 1.20738 1.32686 1.22319 0.94098 0.97231 0.93533 1.21215 0.95741 0.97472 0.98026 1.23266 0.90918 0.98373 0.99719 0.83590 1.24244 0.97188 0.96658 0.98551 1.27005 1.09764 0.84636 0.84703 1.98759 1.94069 1.93704 1.21702 1.98741 1.96484 1.22827 1.89496 1.22765 0.94660 0.89860 0.98149 0.92291 0.78137 0.93685 0.92604 0.91785 0.91733 0.89212 0.94367 0.91736 0.90875 0.84034 0.85995 0.92456 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.56 10.75 21.45 0.23 -48.33 16 2 C 0.03 1.62 5.29 84.65 0.45 2.07 16 3 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.56 -29.96 8.27 25.60 0.21 -29.75 16 8 H 0.05 2.87 7.79 -2.91 -0.02 2.84 16 9 C 0.23 11.37 0.87 -10.16 -0.01 11.36 16 10 O -0.59 -31.32 13.16 -148.98 -1.96 -33.28 16 11 C -0.14 -6.16 5.37 31.78 0.17 -5.99 16 12 C 0.05 1.90 6.89 86.65 0.60 2.50 16 13 N -0.54 -19.38 5.28 -885.54 -4.67 -24.05 16 14 C 0.06 1.48 4.60 86.30 0.40 1.87 16 15 C -0.09 -2.06 4.24 30.60 0.13 -1.93 16 16 C -0.10 -1.79 5.57 -10.80 -0.06 -1.85 16 17 H 0.15 2.03 8.07 -2.39 -0.02 2.01 16 18 C -0.13 -1.90 9.87 30.62 0.30 -1.59 16 19 C -0.01 -0.18 3.62 30.62 0.11 -0.07 16 20 Cl -0.11 -2.50 28.23 -2.72 -0.08 -2.57 16 21 Cl -0.10 -1.88 29.29 -2.72 -0.08 -1.96 16 22 C 0.07 3.08 4.60 86.77 0.40 3.48 16 23 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 24 H 0.37 20.01 7.57 -74.06 -0.56 19.45 16 25 H 0.04 2.08 8.03 -2.39 -0.02 2.06 16 26 H 0.06 2.74 7.54 -2.38 -0.02 2.72 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 2.01 7.57 -2.39 -0.02 2.00 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.06 1.68 6.67 -2.39 -0.02 1.66 16 32 H 0.07 1.95 8.02 -2.39 -0.02 1.93 16 33 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.12 1.84 8.03 -2.39 -0.02 1.82 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.05 2.07 7.19 -2.38 -0.02 2.05 16 Total: -1.00 -57.75 322.19 -1.31 -59.06 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.52 Total: 27.16 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 2.70 Total: -19.90 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -4.44 Total: -72.38 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.96 Total: -33.28 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -4.38 SS G_CDS: -0.16 Total: -4.53 kcal Total: -57.75 -1.31 -59.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830007158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.778 kcal (2) G-P(sol) polarization free energy of solvation -57.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds