Wall clock time and date at job start Tue Mar 31 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99705 * 2 1 4 4 H 1.48501 * 109.47158 * 240.00408 * 3 2 1 5 5 H 1.48506 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47124 * 120.00234 * 3 2 1 7 7 C 1.37873 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46855 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46686 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47045 * 179.97438 * 11 10 9 13 13 S 1.65597 * 120.00079 * 164.72323 * 12 11 10 14 14 O 1.42100 * 106.40448 * 178.54099 * 13 12 11 15 15 O 1.42103 * 106.40365 * 311.46606 * 13 12 11 16 16 C 1.76197 * 107.21750 * 65.00357 * 13 12 11 17 17 C 1.35314 * 126.04826 * 114.71387 * 16 13 12 18 18 N 1.34950 * 107.76283 * 179.89765 * 17 16 13 19 19 H 0.96999 * 126.02012 * 180.11445 * 18 17 16 20 20 N 1.40073 * 107.95123 * 0.36716 * 18 17 16 21 21 C 1.30898 * 108.20397 * 359.76909 * 20 18 17 22 22 Cl 1.73597 * 125.91289 * 179.97438 * 21 20 18 23 23 H 0.97000 * 120.00615 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47186 * 60.00370 * 9 7 2 25 25 H 1.09000 * 109.46568 * 299.99869 * 9 7 2 26 26 H 1.08997 * 109.47025 * 60.00144 * 10 9 7 27 27 H 1.08996 * 109.46815 * 300.00060 * 10 9 7 28 28 H 1.08999 * 109.47565 * 60.00176 * 11 10 9 29 29 H 1.09000 * 109.47473 * 300.00177 * 11 10 9 30 30 H 0.97005 * 119.99811 * 345.00302 * 12 11 10 31 31 H 1.07993 * 126.11304 * 0.02562 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 7 2.4325 -6.1005 -0.0005 13 16 1.9194 -7.6289 0.3778 14 8 3.0544 -8.4750 0.2556 15 8 1.1615 -7.5130 1.5743 16 6 0.7903 -8.1263 -0.8801 17 6 0.9752 -9.1355 -1.7623 18 7 -0.1159 -9.1951 -2.5542 19 1 -0.2620 -9.8246 -3.2775 20 7 -0.9976 -8.1840 -2.1513 21 6 -0.4539 -7.5434 -1.1475 22 17 -1.1543 -6.2026 -0.2959 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6042 -0.8905 28 1 0.8535 -5.0451 -0.8896 29 1 0.8541 -5.0445 0.8903 30 1 3.3643 -5.9418 -0.2186 31 1 1.8401 -9.7795 -1.8206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830391362.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:48 Heat of formation + Delta-G solvation = -14.670766 kcal Electronic energy + Delta-G solvation = -19099.157162 eV Core-core repulsion = 15763.167039 eV Total energy + Delta-G solvation = -3335.990122 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.73666 -37.29491 -36.93245 -35.92561 -35.75669 -33.20793 -31.94982 -30.96687 -30.82331 -26.36398 -23.22253 -22.90994 -22.13649 -20.53234 -19.69707 -18.82068 -17.20860 -16.58383 -16.19038 -15.91692 -15.68768 -15.31221 -14.64116 -14.49325 -14.41455 -13.95287 -12.78039 -12.45558 -12.33879 -12.21968 -12.02607 -11.92700 -11.88798 -11.69036 -11.39224 -10.93567 -10.87294 -10.57343 -10.48622 -9.95462 -9.90525 -9.83466 -9.42172 -9.20738 -9.04775 -8.34236 -5.99414 -4.01989 0.47205 1.06400 1.19904 1.64869 2.59087 3.17527 3.34277 3.38928 3.41173 3.64483 4.04066 4.42821 4.46783 4.65890 4.98497 5.36548 5.37089 5.41687 5.71057 5.96847 6.14857 6.47342 6.61117 6.74212 6.80621 6.99536 7.19808 7.65936 7.79225 7.99478 8.41344 9.04357 9.62061 11.11843 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.004195 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.038717 B = 6673.601865 C = 7277.518879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.108 3.892 12 N -1.110 6.110 13 S 2.722 3.278 14 O -0.971 6.971 15 O -0.945 6.945 16 C -0.805 4.805 17 C 0.195 3.805 18 N -0.451 5.451 19 H 0.450 0.550 20 N -0.269 5.269 21 C 0.196 3.804 22 Cl 0.049 6.951 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.418 0.582 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -20.370 -5.141 21.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.017 4.017 12 N -0.872 5.872 13 S 2.806 3.194 14 O -0.961 6.961 15 O -0.935 6.935 16 C -0.901 4.901 17 C 0.041 3.959 18 N -0.157 5.157 19 H 0.297 0.703 20 N -0.094 5.094 21 C 0.001 3.999 22 Cl 0.077 6.923 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.253 0.747 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.183 -20.753 -5.114 21.375 hybrid contribution 0.895 0.950 -0.690 1.476 sum 1.078 -19.803 -5.804 20.664 Atomic orbital electron populations 1.69947 1.06034 1.26750 1.50630 1.25009 0.94838 0.99220 0.95302 0.86659 0.79570 0.83162 0.78586 1.20303 1.21327 1.20233 1.21177 0.93008 0.90943 1.50864 0.92660 1.19069 0.93951 0.90988 0.97607 1.21867 0.99626 0.92768 1.01274 1.21925 0.91320 0.86742 1.01750 1.55443 1.19392 1.24105 1.88218 1.01089 0.72684 0.72268 0.73314 1.93550 1.49295 1.66020 1.87238 1.93613 1.72680 1.85812 1.41402 1.31744 1.15685 1.14095 1.28624 1.22594 0.91599 0.94616 0.87122 1.46608 1.13451 1.27068 1.28609 0.70302 1.77468 1.14753 1.02096 1.15043 1.22267 0.91342 0.92821 0.93487 1.98520 1.83863 1.37629 1.72276 0.92921 0.96298 0.96207 0.92303 0.92588 0.92003 0.90376 0.74725 0.77664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.24 5.30 -26.73 -0.14 -2.38 16 11 C 0.11 1.76 4.67 -4.04 -0.02 1.75 16 12 N -1.11 -14.85 6.00 -10.61 -0.06 -14.91 16 13 S 2.72 36.29 5.73 -107.50 -0.62 35.67 16 14 O -0.97 -13.43 17.74 -57.17 -1.01 -14.44 16 15 O -0.95 -15.57 17.40 -57.17 -0.99 -16.57 16 16 C -0.80 -9.62 6.12 -39.97 -0.24 -9.86 16 17 C 0.20 1.59 11.62 -17.22 -0.20 1.39 16 18 N -0.45 -3.56 7.35 30.44 0.22 -3.34 16 19 H 0.45 1.56 8.96 -182.62 -1.64 -0.08 16 20 N -0.27 -3.36 12.70 32.95 0.42 -2.94 16 21 C 0.20 2.69 7.76 -17.30 -0.13 2.55 16 22 Cl 0.05 0.74 24.90 -51.86 -1.29 -0.56 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 29 H 0.08 1.33 6.98 -51.93 -0.36 0.97 16 30 H 0.42 4.70 8.65 -34.47 -0.30 4.40 16 31 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 298.61 15.07 4.50 4.50 Total: -1.00 -35.54 298.61 -8.69 -44.23 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -4.28 Total: -2.87 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -1.29 Total: -19.37 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 1.32 Total: -47.00 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -2.01 Total: -31.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 36.29 SS G_CDS: -0.62 Total: 35.67 kcal Atomic # 17 Polarization: 0.74 SS G_CDS: -1.29 Total: -0.56 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.54 -8.69 -44.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830391362.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.562 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds