Wall clock time and date at job start Tue Mar 31 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99705 * 2 1 4 4 H 1.48501 * 109.47158 * 240.00408 * 3 2 1 5 5 H 1.48506 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47124 * 120.00234 * 3 2 1 7 7 C 1.37873 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46855 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46686 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47045 * 179.97438 * 11 10 9 13 13 S 1.65597 * 120.00079 * 164.72323 * 12 11 10 14 14 O 1.42100 * 106.40448 * 178.54099 * 13 12 11 15 15 O 1.42103 * 106.40365 * 311.46606 * 13 12 11 16 16 C 1.76197 * 107.21750 * 65.00357 * 13 12 11 17 17 C 1.35314 * 126.04826 * 114.71387 * 16 13 12 18 18 N 1.34950 * 107.76283 * 179.89765 * 17 16 13 19 19 H 0.96999 * 126.02012 * 180.11445 * 18 17 16 20 20 N 1.40073 * 107.95123 * 0.36716 * 18 17 16 21 21 C 1.30898 * 108.20397 * 359.76909 * 20 18 17 22 22 Cl 1.73597 * 125.91289 * 179.97438 * 21 20 18 23 23 H 0.97000 * 120.00615 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47186 * 60.00370 * 9 7 2 25 25 H 1.09000 * 109.46568 * 299.99869 * 9 7 2 26 26 H 1.08997 * 109.47025 * 60.00144 * 10 9 7 27 27 H 1.08996 * 109.46815 * 300.00060 * 10 9 7 28 28 H 1.08999 * 109.47565 * 60.00176 * 11 10 9 29 29 H 1.09000 * 109.47473 * 300.00177 * 11 10 9 30 30 H 0.97005 * 119.99811 * 345.00302 * 12 11 10 31 31 H 1.07993 * 126.11304 * 0.02562 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 7 2.4325 -6.1005 -0.0005 13 16 1.9194 -7.6289 0.3778 14 8 3.0544 -8.4750 0.2556 15 8 1.1615 -7.5130 1.5743 16 6 0.7903 -8.1263 -0.8801 17 6 0.9752 -9.1355 -1.7623 18 7 -0.1159 -9.1951 -2.5542 19 1 -0.2620 -9.8246 -3.2775 20 7 -0.9976 -8.1840 -2.1513 21 6 -0.4539 -7.5434 -1.1475 22 17 -1.1543 -6.2026 -0.2959 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.8721 -3.6042 0.8894 27 1 2.8721 -3.6042 -0.8905 28 1 0.8535 -5.0451 -0.8896 29 1 0.8541 -5.0445 0.8903 30 1 3.3643 -5.9418 -0.2186 31 1 1.8401 -9.7795 -1.8206 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830391362.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:47 Heat of formation + Delta-G solvation = -43.785423 kcal Electronic energy + Delta-G solvation = -19100.419668 eV Core-core repulsion = 15763.167039 eV Total energy + Delta-G solvation = -3337.252629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.56092 -38.39972 -38.01480 -37.32453 -36.90115 -35.13130 -32.79322 -32.58059 -31.81031 -28.17963 -24.78540 -23.94630 -23.06311 -22.18615 -20.57902 -19.85745 -18.51746 -18.29496 -17.26815 -17.08760 -16.59703 -16.47917 -16.23225 -15.96185 -15.71232 -14.85368 -14.31443 -14.14620 -13.76480 -13.36550 -13.26491 -13.15946 -13.11616 -13.02794 -12.80526 -12.72162 -12.42489 -12.16386 -11.75578 -11.64804 -11.35819 -11.11554 -10.81102 -10.77302 -10.49651 -10.35604 -8.14902 -6.25300 -0.56647 0.25259 0.34305 0.67107 1.43902 1.46517 1.54134 1.89847 2.13067 2.45384 2.65242 3.12985 3.18898 3.71240 3.89347 4.08252 4.10349 4.29618 4.52552 4.54818 4.72957 5.01528 5.24297 5.26915 5.58220 5.76528 5.79952 5.90804 6.09935 6.15975 6.29621 6.91717 7.43655 8.96657 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.004195 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.038717 B = 6673.601865 C = 7277.518879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.119 3.881 12 N -1.105 6.105 13 S 2.742 3.258 14 O -0.972 6.972 15 O -0.982 6.982 16 C -0.828 4.828 17 C 0.224 3.776 18 N -0.428 5.428 19 H 0.471 0.529 20 N -0.294 5.294 21 C 0.180 3.820 22 Cl 0.022 6.978 23 H 0.262 0.738 24 H -0.002 1.002 25 H -0.007 1.007 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.429 0.571 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -21.710 -6.332 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.007 4.007 12 N -0.867 5.867 13 S 2.829 3.171 14 O -0.962 6.962 15 O -0.971 6.971 16 C -0.928 4.928 17 C 0.068 3.932 18 N -0.137 5.137 19 H 0.323 0.677 20 N -0.119 5.119 21 C -0.015 4.015 22 Cl 0.050 6.950 23 H 0.071 0.929 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.266 0.734 31 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.070 -22.111 -6.315 23.088 hybrid contribution 0.304 1.226 -0.403 1.326 sum 2.374 -20.885 -6.718 22.067 Atomic orbital electron populations 1.70090 1.07773 1.27702 1.51771 1.25945 0.95701 1.03239 0.94895 0.85543 0.78260 0.78325 0.79155 1.19098 1.21181 1.19292 1.21674 0.93690 0.92216 1.50336 0.91828 1.18975 0.94492 0.92781 0.95307 1.21652 0.98529 0.92156 1.02120 1.21593 0.91293 0.86270 1.01583 1.55232 1.19648 1.23508 1.88330 1.00224 0.72277 0.71742 0.72853 1.93542 1.49532 1.65737 1.87404 1.93573 1.73431 1.86178 1.43961 1.31497 1.15042 1.16159 1.30068 1.23301 0.92116 0.93022 0.84724 1.46593 1.12520 1.25982 1.28649 0.67734 1.77373 1.16320 1.03255 1.14903 1.22276 0.92161 0.92882 0.94218 1.98504 1.84354 1.39175 1.72999 0.92903 0.98371 0.98832 0.91886 0.91189 0.91599 0.91468 0.73442 0.72845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -30.17 9.11 25.60 0.23 -29.93 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.15 4.97 29.85 0.15 1.30 16 10 C -0.11 -4.06 5.30 30.60 0.16 -3.90 16 11 C 0.12 3.90 4.67 86.38 0.40 4.31 16 12 N -1.10 -28.35 6.00 -187.48 -1.12 -29.47 16 13 S 2.74 69.49 5.73 -56.49 -0.32 69.17 16 14 O -0.97 -24.42 17.74 -128.00 -2.27 -26.69 16 15 O -0.98 -32.30 17.40 -128.00 -2.23 -34.52 16 16 C -0.83 -18.22 6.12 22.02 0.13 -18.09 16 17 C 0.22 2.80 11.62 83.54 0.97 3.77 16 18 N -0.43 -5.39 7.35 -57.59 -0.42 -5.81 16 19 H 0.47 1.50 8.96 -213.34 -1.91 -0.42 16 20 N -0.29 -6.91 12.70 -49.68 -0.63 -7.55 16 21 C 0.18 4.81 7.76 85.25 0.66 5.47 16 22 Cl 0.02 0.67 24.90 -2.72 -0.07 0.61 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.07 2.12 6.37 -2.39 -0.02 2.11 16 29 H 0.07 2.37 6.98 -2.39 -0.02 2.35 16 30 H 0.43 8.87 8.65 -96.74 -0.84 8.03 16 31 H 0.26 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -77.80 298.61 -3.14 -80.94 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -1.55 Total: 0.34 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.18 Total: -36.62 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -1.89 Total: -99.13 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: -4.50 Total: -61.21 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 69.49 SS G_CDS: -0.32 Total: 69.17 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.07 Total: 0.61 kcal Total: -77.80 -3.14 -80.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830391362.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.153 kcal (2) G-P(sol) polarization free energy of solvation -77.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds