Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47214 * 265.47542 * 3 2 1 5 5 H 1.48498 * 109.47567 * 25.47608 * 3 2 1 6 6 H 1.48497 * 109.47315 * 145.47663 * 3 2 1 7 7 C 1.38816 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00282 * 201.89714 * 7 2 1 9 9 N 1.36941 * 119.99601 * 21.90220 * 7 2 1 10 10 C 1.46491 * 119.99801 * 195.74496 * 9 7 2 11 11 C 1.47200 * 109.47468 * 89.99790 * 10 9 7 12 12 C 5.03518 * 86.29390 * 154.57943 * 2 1 3 13 13 C 6.11898 * 81.90607 * 145.90997 * 2 1 3 14 14 C 1.39541 * 120.12356 * 186.85728 * 13 12 11 15 15 C 1.37947 * 119.86467 * 179.74180 * 14 13 12 16 16 C 1.38465 * 120.13173 * 0.53420 * 15 14 13 17 17 Cl 1.73594 * 119.87584 * 179.69804 * 16 15 14 18 18 C 1.38470 * 120.25633 * 359.72097 * 16 15 14 19 19 C 1.37946 * 120.12905 * 0.02562 * 18 16 15 20 20 C 1.46495 * 120.00221 * 15.74100 * 9 7 2 21 21 C 1.50697 * 109.47416 * 264.85978 * 20 9 7 22 22 O 1.20823 * 119.99770 * 0.02562 * 21 20 9 23 23 O 1.34233 * 120.00237 * 179.97438 * 21 20 9 24 24 H 0.96997 * 119.99864 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47225 * 329.99631 * 10 9 7 26 26 H 1.09000 * 109.47622 * 209.99902 * 10 9 7 27 27 H 1.07993 * 120.07152 * 0.02562 * 14 13 12 28 28 H 1.08001 * 119.93788 * 180.25589 * 15 14 13 29 29 H 1.07998 * 119.93571 * 179.97438 * 18 16 15 30 30 H 1.08001 * 120.06310 * 179.97438 * 19 18 16 31 31 H 1.09007 * 109.47427 * 24.86157 * 20 9 7 32 32 H 1.08998 * 109.47603 * 144.85917 * 20 9 7 33 33 H 0.96699 * 117.00237 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5934 1.9912 -1.3957 5 1 1.4032 2.6784 0.6022 6 1 3.4967 1.4697 0.7935 7 6 2.0104 -1.2022 0.0005 8 1 3.0318 -1.2358 0.3493 9 7 1.3997 -2.3455 -0.4414 10 6 1.9813 -3.6535 -0.1303 11 6 1.4303 -4.1452 1.1431 12 6 0.9908 -4.5382 2.1569 13 6 0.4547 -5.0170 3.3955 14 6 1.0838 -6.0618 4.0735 15 6 0.5659 -6.5153 5.2689 16 6 -0.5821 -5.9433 5.7907 17 17 -1.2326 -6.5244 7.2915 18 6 -1.2137 -4.9098 5.1196 19 6 -0.7020 -4.4444 3.9260 20 6 0.1650 -2.2605 -1.2251 21 6 -1.0225 -2.4130 -0.3099 22 8 -0.8546 -2.5754 0.8756 23 8 -2.2667 -2.3673 -0.8114 24 1 -0.4850 0.8400 -0.0004 25 1 3.0638 -3.5590 -0.0453 26 1 1.7395 -4.3574 -0.9266 27 1 1.9769 -6.5115 3.6656 28 1 1.0542 -7.3212 5.7968 29 1 -2.1090 -4.4677 5.5310 30 1 -1.1957 -3.6386 3.4033 31 1 0.1172 -1.2925 -1.7241 32 1 0.1528 -3.0549 -1.9713 33 1 -2.9965 -2.4703 -0.1854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = 2.759319 kcal Electronic energy + Delta-G solvation = -20263.100886 eV Core-core repulsion = 16895.962981 eV Total energy + Delta-G solvation = -3367.137905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.08386 -38.71245 -36.48704 -36.05732 -34.40902 -33.22380 -31.56996 -30.98702 -29.78806 -27.60712 -26.07337 -23.01576 -22.60540 -22.09628 -20.16331 -17.96860 -17.00298 -16.68929 -16.36948 -15.41942 -15.28486 -15.18138 -14.37558 -14.16624 -13.75694 -13.59703 -13.49576 -13.43849 -13.41130 -12.24744 -11.83525 -11.69281 -11.65048 -11.57796 -11.25712 -11.11510 -10.79722 -10.73900 -10.30172 -10.20135 -10.06696 -9.84564 -9.38789 -9.13878 -8.97091 -8.64522 -7.96440 -7.28493 -6.03927 -3.38675 1.02189 1.41041 2.13975 3.28440 3.31252 3.34835 3.38554 3.45977 3.89131 4.28592 4.34835 4.50490 4.75999 4.92954 4.97959 5.21363 5.35944 5.45207 5.57973 5.70153 6.00259 6.08649 6.14541 6.24299 6.31200 6.36746 6.60298 6.73885 6.86030 6.93905 6.99602 7.59591 7.84624 8.03966 8.44362 8.88621 9.40291 9.58045 9.97089 11.06656 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.003799 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.626798 B = 7369.259089 C = 7527.445031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.235 3.765 11 C -0.103 4.103 12 C -0.203 4.203 13 C 0.061 3.939 14 C -0.101 4.101 15 C -0.112 4.112 16 C -0.043 4.043 17 Cl -0.083 7.083 18 C -0.110 4.110 19 C -0.084 4.084 20 C 0.187 3.813 21 C 0.472 3.528 22 O -0.503 6.503 23 O -0.545 6.545 24 H 0.259 0.741 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -10.941 4.237 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.102 0.898 9 N -0.275 5.275 10 C 0.109 3.891 11 C -0.106 4.106 12 C -0.206 4.206 13 C 0.061 3.939 14 C -0.120 4.120 15 C -0.131 4.131 16 C -0.070 4.070 17 Cl -0.054 7.054 18 C -0.129 4.129 19 C -0.102 4.102 20 C 0.058 3.942 21 C 0.311 3.689 22 O -0.388 6.388 23 O -0.356 6.356 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.907 -10.807 4.405 11.706 hybrid contribution -0.495 0.991 1.062 1.535 sum -1.402 -9.816 5.467 11.323 Atomic orbital electron populations 1.69855 1.05333 1.26154 1.53042 1.24909 0.95289 0.98782 1.00384 0.86105 0.78940 0.82666 0.77863 1.21051 1.21798 1.20408 1.19363 0.95226 0.84353 1.40166 0.89850 1.44443 1.23635 1.00794 1.58660 1.18402 0.97077 0.86994 0.86600 1.24408 0.96754 0.93953 0.95506 1.18789 1.03005 1.04367 0.94394 1.16022 0.93650 0.94114 0.90107 1.21178 1.00067 0.96426 0.94293 1.20858 0.95176 1.00749 0.96299 1.20934 0.97317 0.99187 0.89550 1.98344 1.86056 1.88257 1.32771 1.20978 1.00532 0.96080 0.95263 1.21459 0.95011 0.99332 0.94379 1.20377 0.80900 1.02615 0.90265 1.25188 0.82951 0.70468 0.90314 1.90536 1.85423 1.44997 1.17820 1.84627 1.17878 1.86698 1.46399 0.93069 0.89907 0.90994 0.85017 0.85036 0.84981 0.83959 0.86620 0.92762 0.76495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 9.21 55.49 0.51 -24.17 16 2 C 0.01 0.14 4.87 -17.43 -0.08 0.05 16 3 Si 0.91 20.91 29.61 -169.99 -5.03 15.88 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.74 9.67 -15.06 -0.15 -6.89 16 8 H 0.08 2.09 7.90 -52.49 -0.41 1.68 16 9 N -0.56 -12.92 2.14 -177.96 -0.38 -13.30 16 10 C 0.24 4.56 6.18 -6.83 -0.04 4.52 16 11 C -0.10 -2.19 11.90 -37.14 -0.44 -2.63 16 12 C -0.20 -4.24 12.65 -38.85 -0.49 -4.74 16 13 C 0.06 1.11 5.72 -107.00 -0.61 0.49 16 14 C -0.10 -1.48 9.75 -39.20 -0.38 -1.86 16 15 C -0.11 -1.45 9.81 -39.60 -0.39 -1.84 16 16 C -0.04 -0.59 6.32 -39.41 -0.25 -0.84 16 17 Cl -0.08 -0.99 28.95 -51.86 -1.50 -2.49 16 18 C -0.11 -1.60 9.81 -39.60 -0.39 -1.99 16 19 C -0.08 -1.45 9.75 -39.20 -0.38 -1.84 16 20 C 0.19 4.15 5.53 -5.20 -0.03 4.12 16 21 C 0.47 10.95 6.48 36.00 0.23 11.18 16 22 O -0.50 -13.04 14.50 -18.75 -0.27 -13.31 16 23 O -0.55 -10.87 13.42 -39.26 -0.53 -11.39 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.08 1.46 8.02 -51.93 -0.42 1.04 16 26 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 27 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.14 2.75 8.06 -52.49 -0.42 2.33 16 31 H 0.12 2.76 6.37 -51.92 -0.33 2.43 16 32 H 0.05 1.00 7.97 -51.93 -0.41 0.59 16 33 H 0.38 6.10 9.10 45.56 0.41 6.52 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -30.94 315.45 -8.25 -39.19 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.40 Total: 7.10 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.41 Total: -2.26 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.13 Total: -37.47 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.80 Total: -24.70 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.94 -8.25 -39.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.950 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds