Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47214 * 265.47542 * 3 2 1 5 5 H 1.48498 * 109.47567 * 25.47608 * 3 2 1 6 6 H 1.48497 * 109.47315 * 145.47663 * 3 2 1 7 7 C 1.38816 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00282 * 201.89714 * 7 2 1 9 9 N 1.36941 * 119.99601 * 21.90220 * 7 2 1 10 10 C 1.46491 * 119.99801 * 195.74496 * 9 7 2 11 11 C 1.47200 * 109.47468 * 89.99790 * 10 9 7 12 12 C 5.03518 * 86.29390 * 154.57943 * 2 1 3 13 13 C 6.11898 * 81.90607 * 145.90997 * 2 1 3 14 14 C 1.39541 * 120.12356 * 186.85728 * 13 12 11 15 15 C 1.37947 * 119.86467 * 179.74180 * 14 13 12 16 16 C 1.38465 * 120.13173 * 0.53420 * 15 14 13 17 17 Cl 1.73594 * 119.87584 * 179.69804 * 16 15 14 18 18 C 1.38470 * 120.25633 * 359.72097 * 16 15 14 19 19 C 1.37946 * 120.12905 * 0.02562 * 18 16 15 20 20 C 1.46495 * 120.00221 * 15.74100 * 9 7 2 21 21 C 1.50697 * 109.47416 * 264.85978 * 20 9 7 22 22 O 1.20823 * 119.99770 * 0.02562 * 21 20 9 23 23 O 1.34233 * 120.00237 * 179.97438 * 21 20 9 24 24 H 0.96997 * 119.99864 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47225 * 329.99631 * 10 9 7 26 26 H 1.09000 * 109.47622 * 209.99902 * 10 9 7 27 27 H 1.07993 * 120.07152 * 0.02562 * 14 13 12 28 28 H 1.08001 * 119.93788 * 180.25589 * 15 14 13 29 29 H 1.07998 * 119.93571 * 179.97438 * 18 16 15 30 30 H 1.08001 * 120.06310 * 179.97438 * 19 18 16 31 31 H 1.09007 * 109.47427 * 24.86157 * 20 9 7 32 32 H 1.08998 * 109.47603 * 144.85917 * 20 9 7 33 33 H 0.96699 * 117.00237 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5934 1.9912 -1.3957 5 1 1.4032 2.6784 0.6022 6 1 3.4967 1.4697 0.7935 7 6 2.0104 -1.2022 0.0005 8 1 3.0318 -1.2358 0.3493 9 7 1.3997 -2.3455 -0.4414 10 6 1.9813 -3.6535 -0.1303 11 6 1.4303 -4.1452 1.1431 12 6 0.9908 -4.5382 2.1569 13 6 0.4547 -5.0170 3.3955 14 6 1.0838 -6.0618 4.0735 15 6 0.5659 -6.5153 5.2689 16 6 -0.5821 -5.9433 5.7907 17 17 -1.2326 -6.5244 7.2915 18 6 -1.2137 -4.9098 5.1196 19 6 -0.7020 -4.4444 3.9260 20 6 0.1650 -2.2605 -1.2251 21 6 -1.0225 -2.4130 -0.3099 22 8 -0.8546 -2.5754 0.8756 23 8 -2.2667 -2.3673 -0.8114 24 1 -0.4850 0.8400 -0.0004 25 1 3.0638 -3.5590 -0.0453 26 1 1.7395 -4.3574 -0.9266 27 1 1.9769 -6.5115 3.6656 28 1 1.0542 -7.3212 5.7968 29 1 -2.1090 -4.4677 5.5310 30 1 -1.1957 -3.6386 3.4033 31 1 0.1172 -1.2925 -1.7241 32 1 0.1528 -3.0549 -1.9713 33 1 -2.9965 -2.4703 -0.1854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065780.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = -14.116211 kcal Electronic energy + Delta-G solvation = -20263.832664 eV Core-core repulsion = 16895.962981 eV Total energy + Delta-G solvation = -3367.869683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49893 -40.25575 -37.79572 -37.50785 -36.19211 -34.76415 -33.29159 -32.15174 -31.25159 -29.30101 -27.78630 -24.60515 -23.77389 -23.56456 -21.92314 -19.29722 -18.82578 -18.39611 -17.64957 -17.16467 -16.95129 -16.41939 -15.97204 -15.76542 -15.46041 -15.21681 -14.90810 -14.66151 -14.55200 -13.83846 -13.44219 -13.21776 -12.98898 -12.93720 -12.72624 -12.70401 -12.46884 -12.12210 -12.06976 -11.88255 -11.83284 -11.24590 -11.11621 -10.83067 -10.52566 -10.12717 -9.27756 -9.12838 -7.99761 -5.34932 -0.21833 0.24809 1.06103 1.48919 1.49855 1.57700 1.85011 1.98187 2.09509 2.50643 2.80598 2.94272 3.20921 3.46208 3.66759 3.83261 3.86297 4.25873 4.41022 4.48307 4.62424 4.70466 4.76345 4.88531 4.94023 5.12073 5.13667 5.22595 5.32472 5.51048 5.61308 5.72881 6.16528 6.19491 6.88985 6.98167 7.59849 7.79308 8.08532 9.08644 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.003799 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.626798 B = 7369.259089 C = 7527.445031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.045 4.045 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.084 0.916 9 N -0.570 5.570 10 C 0.233 3.767 11 C -0.138 4.138 12 C -0.212 4.212 13 C 0.024 3.976 14 C -0.093 4.093 15 C -0.100 4.100 16 C -0.040 4.040 17 Cl -0.061 7.061 18 C -0.108 4.108 19 C -0.101 4.101 20 C 0.185 3.815 21 C 0.470 3.530 22 O -0.536 6.536 23 O -0.538 6.538 24 H 0.250 0.750 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.152 0.848 28 H 0.167 0.833 29 H 0.148 0.852 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.535 -12.622 5.079 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.240 4.240 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.102 0.898 9 N -0.288 5.288 10 C 0.108 3.892 11 C -0.141 4.141 12 C -0.214 4.214 13 C 0.024 3.976 14 C -0.111 4.111 15 C -0.119 4.119 16 C -0.067 4.067 17 Cl -0.032 7.032 18 C -0.127 4.127 19 C -0.119 4.119 20 C 0.056 3.944 21 C 0.311 3.689 22 O -0.424 6.424 23 O -0.350 6.350 24 H 0.059 0.941 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.170 0.830 28 H 0.185 0.815 29 H 0.166 0.834 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.274 -12.515 5.232 13.568 hybrid contribution -0.763 1.373 0.916 1.819 sum -1.038 -11.142 6.148 12.768 Atomic orbital electron populations 1.70013 1.06408 1.25827 1.54932 1.25575 0.95943 1.01394 1.01111 0.85198 0.77576 0.79060 0.78012 1.20078 1.23221 1.19988 1.19645 0.95455 0.85586 1.38890 0.89828 1.44556 1.23928 1.01561 1.58781 1.18686 0.97569 0.85957 0.86997 1.24823 0.97765 0.95018 0.96499 1.19591 1.02605 1.03970 0.95193 1.16274 0.94826 0.96297 0.90223 1.21374 1.00253 0.95029 0.94400 1.21222 0.94496 1.00745 0.95407 1.21073 0.97179 0.98355 0.90048 1.98358 1.85798 1.87834 1.31194 1.21066 1.01000 0.96338 0.94248 1.21236 0.95538 0.99447 0.95711 1.20448 0.80415 1.02948 0.90599 1.25424 0.83933 0.69559 0.89973 1.90535 1.86076 1.46585 1.19160 1.84559 1.17672 1.86128 1.46638 0.94094 0.88417 0.87606 0.82994 0.81548 0.83409 0.87117 0.88612 0.88820 0.74521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.94 9.21 21.65 0.20 -51.74 16 2 C -0.04 -2.37 4.87 84.86 0.41 -1.96 16 3 Si 0.97 43.56 29.61 68.60 2.03 45.60 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.27 -13.75 9.67 84.03 0.81 -12.94 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 9 N -0.57 -26.32 2.14 -716.94 -1.53 -27.86 16 10 C 0.23 8.84 6.18 84.58 0.52 9.36 16 11 C -0.14 -5.91 11.90 31.14 0.37 -5.54 16 12 C -0.21 -8.98 12.65 30.03 0.38 -8.60 16 13 C 0.02 0.87 5.72 -21.40 -0.12 0.75 16 14 C -0.09 -2.54 9.75 22.52 0.22 -2.32 16 15 C -0.10 -2.29 9.81 22.25 0.22 -2.08 16 16 C -0.04 -0.99 6.32 22.38 0.14 -0.85 16 17 Cl -0.06 -1.26 28.95 -2.72 -0.08 -1.34 16 18 C -0.11 -3.06 9.81 22.26 0.22 -2.84 16 19 C -0.10 -3.60 9.75 22.52 0.22 -3.38 16 20 C 0.18 8.14 5.53 85.63 0.47 8.61 16 21 C 0.47 22.03 6.48 71.24 0.46 22.49 16 22 O -0.54 -28.54 14.50 21.97 0.32 -28.22 16 23 O -0.54 -21.35 13.42 -51.44 -0.69 -22.04 16 24 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.10 3.34 8.02 -2.39 -0.02 3.32 16 26 H 0.11 3.22 7.94 -2.39 -0.02 3.20 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 29 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 31 H 0.10 4.62 6.37 -2.38 -0.02 4.61 16 32 H 0.09 3.31 7.97 -2.39 -0.02 3.29 16 33 H 0.40 12.70 9.10 -74.06 -0.67 12.03 16 Total: -1.00 -67.75 315.45 5.06 -62.69 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.49 Total: 22.19 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 4.33 Total: 0.72 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.33 Total: -79.59 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.37 Total: -50.26 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -67.75 5.06 -62.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065780.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.571 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds