Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99856 * 2 1 4 4 H 1.48497 * 109.47396 * 240.00286 * 3 2 1 5 5 H 1.48503 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47032 * 119.99672 * 3 2 1 7 7 C 1.38808 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00024 * 202.51922 * 7 2 1 9 9 N 1.36936 * 119.99857 * 22.52044 * 7 2 1 10 10 C 1.46500 * 120.00306 * 15.75091 * 9 7 2 11 11 C 1.50696 * 109.47397 * 264.03980 * 10 9 7 12 12 O 1.20826 * 119.99654 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00139 * 195.75233 * 9 7 2 15 15 C 1.50699 * 109.47251 * 269.99974 * 14 9 7 16 16 C 1.35509 * 120.05301 * 260.02159 * 15 14 9 17 17 C 1.39487 * 121.58569 * 179.70223 * 16 15 14 18 18 C 1.35513 * 121.57946 * 0.56727 * 17 16 15 19 19 C 1.41759 * 119.90023 * 359.44370 * 18 17 16 20 20 N 1.32330 * 131.00566 * 180.27762 * 19 18 17 21 21 S 1.55540 * 109.42125 * 179.97438 * 20 19 18 22 22 N 1.55541 * 100.20332 * 0.02562 * 21 20 19 23 23 C 1.32328 * 109.41899 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00627 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46807 * 24.04051 * 10 9 7 26 26 H 1.08996 * 109.47554 * 144.03666 * 10 9 7 27 27 H 0.96704 * 116.99828 * 180.02562 * 13 11 10 28 28 H 1.09000 * 109.47721 * 150.00042 * 14 9 7 29 29 H 1.09003 * 109.47401 * 29.99669 * 14 9 7 30 30 H 1.07996 * 119.20393 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.21435 * 180.30895 * 17 16 15 32 32 H 1.08001 * 120.04780 * 179.71507 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0285 -1.2375 0.3588 9 7 1.4040 -2.3430 -0.4532 10 6 0.1767 -2.2539 -1.2482 11 6 -1.0189 -2.4313 -0.3481 12 8 -0.8619 -2.6130 0.8360 13 8 -2.2582 -2.3864 -0.8618 14 6 1.9826 -3.6528 -0.1436 15 6 2.9559 -4.0407 -1.2267 16 6 2.5789 -4.9047 -2.2002 17 6 3.4515 -5.2809 -3.2213 18 6 4.7202 -4.8084 -3.2805 19 6 5.1829 -3.9004 -2.2951 20 7 6.3558 -3.3067 -2.1437 21 16 6.3179 -2.4014 -0.8795 22 7 4.8596 -2.6556 -0.4022 23 6 4.2672 -3.5019 -1.2292 24 1 -0.4851 0.8400 -0.0004 25 1 0.1265 -1.2778 -1.7308 26 1 0.1785 -3.0352 -2.0081 27 1 -2.9935 -2.5052 -0.2451 28 1 1.1880 -4.3966 -0.0858 29 1 2.5039 -3.6030 0.8124 30 1 1.5773 -5.3084 -2.1875 31 1 3.1092 -5.9684 -3.9807 32 1 5.3765 -5.1197 -4.0798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = 18.574215 kcal Electronic energy + Delta-G solvation = -21311.117992 eV Core-core repulsion = 17979.002329 eV Total energy + Delta-G solvation = -3332.115662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.55983 -38.72546 -36.58905 -35.52055 -34.46523 -33.46008 -31.66275 -29.98762 -27.68119 -26.96574 -25.48345 -22.51253 -22.21310 -20.65974 -19.85147 -18.85327 -17.23454 -16.76583 -16.63035 -15.89691 -15.52887 -15.10816 -15.01416 -14.75909 -14.13834 -13.50193 -13.40820 -13.23493 -12.39454 -11.98468 -11.74173 -11.62479 -11.43241 -11.35678 -11.19947 -10.88565 -10.82337 -10.62466 -10.52120 -10.30140 -10.19835 -9.98200 -9.83298 -9.23166 -8.57100 -8.39193 -7.95035 -7.10446 -5.92530 -3.21853 0.22541 1.75778 1.80848 2.12062 2.16794 3.35544 3.41316 3.42371 3.82765 3.86487 4.35777 4.47723 4.55027 5.08256 5.18534 5.31380 5.41060 5.44238 5.48973 5.61425 5.99333 6.24712 6.31907 6.33064 6.56434 6.61473 6.65414 6.86291 6.93810 7.00394 7.25890 7.80167 7.86682 8.16514 9.04460 9.40685 9.69567 10.10664 11.19106 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.007209 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.672990 B = 3883.093296 C = 5304.088787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.095 0.905 9 N -0.554 5.554 10 C 0.187 3.813 11 C 0.478 3.522 12 O -0.515 6.515 13 O -0.543 6.543 14 C 0.184 3.816 15 C -0.017 4.017 16 C -0.121 4.121 17 C -0.077 4.077 18 C -0.094 4.094 19 C 0.082 3.918 20 N -0.611 5.611 21 S 0.748 5.252 22 N -0.551 5.551 23 C 0.099 3.901 24 H 0.257 0.743 25 H 0.114 0.886 26 H 0.052 0.948 27 H 0.381 0.619 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -9.114 -6.148 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.113 0.887 9 N -0.271 5.271 10 C 0.058 3.942 11 C 0.317 3.683 12 O -0.401 6.401 13 O -0.354 6.354 14 C 0.057 3.943 15 C -0.027 4.027 16 C -0.147 4.147 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.078 4.078 20 N -0.461 5.461 21 S 0.796 5.204 22 N -0.400 5.400 23 C -0.061 4.061 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.070 0.930 27 H 0.236 0.764 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.122 -7.557 -5.105 12.212 hybrid contribution -1.484 0.080 -0.221 1.502 sum 6.638 -7.477 -5.325 11.328 Atomic orbital electron populations 1.69861 1.05181 1.25893 1.54157 1.24818 0.95195 0.98416 1.01530 0.86311 0.79002 0.83196 0.78112 1.21239 1.21651 1.20786 1.19565 0.96289 0.84445 1.37165 0.88748 1.43880 1.22844 1.01378 1.59026 1.20258 0.81274 1.02596 0.90103 1.25251 0.83120 0.70042 0.89843 1.90515 1.85844 1.45676 1.18068 1.84629 1.17802 1.86340 1.46623 1.19780 0.92937 0.88003 0.93614 1.20338 0.90240 0.92792 0.99355 1.20561 1.00251 0.99300 0.94566 1.20685 0.92846 0.98793 0.97926 1.20042 0.96490 0.97753 0.97646 1.21391 0.87591 1.00213 0.98654 1.72198 1.27676 1.19711 1.26485 1.78508 1.06276 1.30389 1.05272 1.72399 1.13348 1.21124 1.33159 1.21167 0.97326 0.96026 0.91569 0.93293 0.86808 0.92965 0.76358 0.92640 0.91399 0.85112 0.85146 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.62 9.33 55.49 0.52 -25.11 16 2 C 0.00 -0.06 4.86 -17.43 -0.08 -0.15 16 3 Si 0.90 21.95 29.61 -169.99 -5.03 16.92 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.56 9.66 -15.06 -0.15 -6.70 16 8 H 0.09 2.54 6.58 -52.49 -0.35 2.19 16 9 N -0.55 -13.24 2.01 -175.99 -0.35 -13.59 16 10 C 0.19 4.25 5.49 -5.20 -0.03 4.22 16 11 C 0.48 11.21 6.56 36.00 0.24 11.45 16 12 O -0.52 -13.85 16.91 -18.75 -0.32 -14.17 16 13 O -0.54 -10.77 13.42 -39.25 -0.53 -11.29 16 14 C 0.18 3.74 5.75 -5.19 -0.03 3.71 16 15 C -0.02 -0.30 5.49 -104.25 -0.57 -0.87 16 16 C -0.12 -1.71 9.51 -40.09 -0.38 -2.09 16 17 C -0.08 -0.93 9.89 -40.09 -0.40 -1.33 16 18 C -0.09 -1.28 10.09 -39.21 -0.40 -1.68 16 19 C 0.08 1.37 7.16 -83.17 -0.60 0.77 16 20 N -0.61 -9.99 11.44 25.62 0.29 -9.70 16 21 S 0.75 11.22 23.60 -107.50 -2.54 8.68 16 22 N -0.55 -10.46 10.09 25.62 0.26 -10.20 16 23 C 0.10 1.84 6.91 -83.17 -0.58 1.27 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.11 2.84 6.33 -51.93 -0.33 2.51 16 26 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 27 H 0.38 5.99 9.10 45.56 0.41 6.40 16 28 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 29 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 30 H 0.13 1.55 7.98 -52.49 -0.42 1.13 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -33.84 297.57 -8.09 -41.93 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -1.91 Total: 3.46 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -2.97 Total: 8.59 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.71 Total: -58.60 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.84 Total: -25.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 11.22 SS G_CDS: -2.54 Total: 8.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.84 -8.09 -41.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.506 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds