Wall clock time and date at job start Tue Mar 31 2020 06:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99856 * 2 1 4 4 H 1.48497 * 109.47396 * 240.00286 * 3 2 1 5 5 H 1.48503 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47032 * 119.99672 * 3 2 1 7 7 C 1.38808 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00024 * 202.51922 * 7 2 1 9 9 N 1.36936 * 119.99857 * 22.52044 * 7 2 1 10 10 C 1.46500 * 120.00306 * 15.75091 * 9 7 2 11 11 C 1.50696 * 109.47397 * 264.03980 * 10 9 7 12 12 O 1.20826 * 119.99654 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00139 * 195.75233 * 9 7 2 15 15 C 1.50699 * 109.47251 * 269.99974 * 14 9 7 16 16 C 1.35509 * 120.05301 * 260.02159 * 15 14 9 17 17 C 1.39487 * 121.58569 * 179.70223 * 16 15 14 18 18 C 1.35513 * 121.57946 * 0.56727 * 17 16 15 19 19 C 1.41759 * 119.90023 * 359.44370 * 18 17 16 20 20 N 1.32330 * 131.00566 * 180.27762 * 19 18 17 21 21 S 1.55540 * 109.42125 * 179.97438 * 20 19 18 22 22 N 1.55541 * 100.20332 * 0.02562 * 21 20 19 23 23 C 1.32328 * 109.41899 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00627 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46807 * 24.04051 * 10 9 7 26 26 H 1.08996 * 109.47554 * 144.03666 * 10 9 7 27 27 H 0.96704 * 116.99828 * 180.02562 * 13 11 10 28 28 H 1.09000 * 109.47721 * 150.00042 * 14 9 7 29 29 H 1.09003 * 109.47401 * 29.99669 * 14 9 7 30 30 H 1.07996 * 119.20393 * 359.97438 * 16 15 14 31 31 H 1.08001 * 119.21435 * 180.30895 * 17 16 15 32 32 H 1.08001 * 120.04780 * 179.71507 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0285 -1.2375 0.3588 9 7 1.4040 -2.3430 -0.4532 10 6 0.1767 -2.2539 -1.2482 11 6 -1.0189 -2.4313 -0.3481 12 8 -0.8619 -2.6130 0.8360 13 8 -2.2582 -2.3864 -0.8618 14 6 1.9826 -3.6528 -0.1436 15 6 2.9559 -4.0407 -1.2267 16 6 2.5789 -4.9047 -2.2002 17 6 3.4515 -5.2809 -3.2213 18 6 4.7202 -4.8084 -3.2805 19 6 5.1829 -3.9004 -2.2951 20 7 6.3558 -3.3067 -2.1437 21 16 6.3179 -2.4014 -0.8795 22 7 4.8596 -2.6556 -0.4022 23 6 4.2672 -3.5019 -1.2292 24 1 -0.4851 0.8400 -0.0004 25 1 0.1265 -1.2778 -1.7308 26 1 0.1785 -3.0352 -2.0081 27 1 -2.9935 -2.5052 -0.2451 28 1 1.1880 -4.3966 -0.0858 29 1 2.5039 -3.6030 0.8124 30 1 1.5773 -5.3084 -2.1875 31 1 3.1092 -5.9684 -3.9807 32 1 5.3765 -5.1197 -4.0798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:13 Heat of formation + Delta-G solvation = -4.858673 kcal Electronic energy + Delta-G solvation = -21312.134118 eV Core-core repulsion = 17979.002329 eV Total energy + Delta-G solvation = -3333.131788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77655 -40.52148 -38.03559 -36.95074 -36.22357 -34.83957 -33.38172 -31.46265 -29.28489 -28.30209 -27.14210 -24.26238 -23.39489 -22.15521 -21.38805 -20.12218 -18.75655 -18.46369 -18.23353 -17.29055 -17.05705 -16.73484 -16.55900 -16.01649 -15.84214 -15.31901 -15.09900 -14.64388 -13.72921 -13.44882 -13.30798 -13.03866 -12.93758 -12.65692 -12.63262 -12.51332 -12.48530 -12.20815 -12.11585 -12.01986 -11.82732 -11.66132 -11.44762 -11.08261 -10.53642 -9.54656 -9.18127 -8.94526 -7.94582 -5.24283 -0.95723 0.58177 0.61846 0.91854 0.96947 1.41025 1.42073 1.48882 2.03242 2.44747 2.71359 2.83579 3.21447 3.30908 3.69189 4.04935 4.12521 4.19850 4.38600 4.45581 4.62782 4.65577 4.97763 5.11996 5.18242 5.20373 5.26573 5.47690 5.54238 5.68918 5.77364 6.10348 6.17161 6.26631 7.07521 7.62759 7.82599 8.16996 9.14699 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.007209 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.672990 B = 3883.093296 C = 5304.088787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.054 4.054 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.239 4.239 8 H 0.085 0.915 9 N -0.570 5.570 10 C 0.189 3.811 11 C 0.482 3.518 12 O -0.557 6.557 13 O -0.533 6.533 14 C 0.192 3.808 15 C -0.058 4.058 16 C -0.090 4.090 17 C -0.067 4.067 18 C -0.091 4.091 19 C 0.063 3.937 20 N -0.619 5.619 21 S 0.798 5.202 22 N -0.605 5.605 23 C 0.079 3.921 24 H 0.247 0.753 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.401 0.599 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.159 0.841 31 H 0.181 0.819 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -10.999 -8.538 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.248 4.248 3 Si 0.783 3.217 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.289 5.289 10 C 0.059 3.941 11 C 0.324 3.676 12 O -0.447 6.447 13 O -0.344 6.344 14 C 0.066 3.934 15 C -0.067 4.067 16 C -0.116 4.116 17 C -0.092 4.092 18 C -0.115 4.115 19 C -0.096 4.096 20 N -0.470 5.470 21 S 0.846 5.154 22 N -0.456 5.456 23 C -0.080 4.080 24 H 0.057 0.943 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.259 0.741 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.177 0.823 31 H 0.198 0.802 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.526 -9.474 -7.517 14.797 hybrid contribution -1.534 0.492 0.470 1.678 sum 6.992 -8.982 -7.047 13.387 Atomic orbital electron populations 1.69992 1.05889 1.25404 1.56528 1.25374 0.95894 1.00622 1.02861 0.85525 0.77805 0.80469 0.77880 1.20869 1.22067 1.21036 1.19685 0.95890 0.85693 1.35664 0.89762 1.44051 1.23584 1.01846 1.59381 1.20292 0.80629 1.02630 0.90504 1.25411 0.84181 0.68796 0.89231 1.90498 1.86634 1.47795 1.19748 1.84553 1.17498 1.85591 1.46784 1.19679 0.93386 0.86826 0.93500 1.20075 0.90069 0.96388 1.00182 1.21013 1.01584 0.96220 0.92744 1.21158 0.91590 0.98496 0.97918 1.20552 0.97592 0.96277 0.97124 1.21794 0.87337 1.01275 0.99238 1.72163 1.27866 1.19972 1.27027 1.78130 1.04268 1.29008 1.04028 1.72233 1.15542 1.22799 1.35049 1.21478 0.98114 0.96250 0.92145 0.94323 0.89236 0.88875 0.74085 0.91347 0.94524 0.82341 0.80155 0.82479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.83 9.33 21.65 0.20 -53.63 16 2 C -0.05 -2.99 4.86 84.86 0.41 -2.58 16 3 Si 0.95 46.26 29.61 68.60 2.03 48.29 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.24 -13.08 9.66 84.03 0.81 -12.27 16 8 H 0.08 4.70 6.58 -2.91 -0.02 4.68 16 9 N -0.57 -27.45 2.01 -710.70 -1.43 -28.88 16 10 C 0.19 8.44 5.49 85.63 0.47 8.91 16 11 C 0.48 22.41 6.56 71.23 0.47 22.88 16 12 O -0.56 -30.25 16.91 21.97 0.37 -29.88 16 13 O -0.53 -20.35 13.42 -51.37 -0.69 -21.04 16 14 C 0.19 7.83 5.75 85.63 0.49 8.32 16 15 C -0.06 -1.98 5.49 -19.62 -0.11 -2.09 16 16 C -0.09 -2.18 9.51 21.94 0.21 -1.97 16 17 C -0.07 -1.26 9.89 21.94 0.22 -1.04 16 18 C -0.09 -2.10 10.09 22.51 0.23 -1.87 16 19 C 0.06 1.98 7.16 41.97 0.30 2.28 16 20 N -0.62 -19.37 11.44 -72.85 -0.83 -20.21 16 21 S 0.80 23.67 23.60 -56.49 -1.33 22.33 16 22 N -0.61 -23.34 10.09 -72.86 -0.74 -24.08 16 23 C 0.08 2.90 6.91 41.97 0.29 3.19 16 24 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 25 H 0.09 4.49 6.33 -2.39 -0.02 4.48 16 26 H 0.09 3.31 8.12 -2.39 -0.02 3.29 16 27 H 0.40 11.98 9.10 -74.05 -0.67 11.31 16 28 H 0.07 2.52 7.89 -2.39 -0.02 2.50 16 29 H 0.04 1.67 8.04 -2.39 -0.02 1.65 16 30 H 0.16 2.92 7.98 -2.91 -0.02 2.90 16 31 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -75.79 297.57 1.89 -73.91 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.51 Total: 9.42 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 3.79 Total: 23.76 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -2.80 Total: -126.79 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.32 Total: -50.92 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 23.67 SS G_CDS: -1.33 Total: 22.33 kcal Total: -75.79 1.89 -73.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.047 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds