Wall clock time and date at job start Tue Mar 31 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99702 * 2 1 4 4 H 1.48498 * 109.47092 * 269.99728 * 3 2 1 5 5 H 1.48497 * 109.47501 * 30.00000 * 3 2 1 6 6 H 1.48504 * 109.47088 * 150.00101 * 3 2 1 7 7 C 1.37873 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99948 * 179.97438 * 7 2 1 10 10 S 1.81403 * 109.47181 * 179.97438 * 9 7 2 11 11 O 1.42097 * 110.53823 * 68.37510 * 10 9 7 12 12 O 1.42101 * 110.54006 * 291.62481 * 10 9 7 13 13 N 1.65596 * 104.44879 * 179.97438 * 10 9 7 14 14 C 1.34773 * 120.00034 * 65.00223 * 13 10 9 15 15 O 1.21287 * 120.00129 * 359.97438 * 14 13 10 16 16 C 1.50701 * 120.00171 * 179.97438 * 14 13 10 17 17 H 1.08997 * 109.68188 * 29.67594 * 16 14 13 18 18 C 1.53101 * 109.57775 * 149.99971 * 16 14 13 19 19 C 1.52581 * 109.95693 * 182.83165 * 18 16 14 20 20 C 1.52577 * 110.69350 * 289.34546 * 19 18 16 21 21 C 1.53019 * 110.00025 * 70.70304 * 20 19 18 22 22 S 1.81747 * 109.57448 * 269.35390 * 16 14 13 23 23 H 0.97001 * 120.00165 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47020 * 59.99800 * 9 7 2 25 25 H 1.08999 * 109.47280 * 299.99795 * 9 7 2 26 26 H 0.96999 * 120.00657 * 245.00121 * 13 10 9 27 27 H 1.09003 * 109.39229 * 62.68250 * 18 16 14 28 28 H 1.08998 * 109.38918 * 302.98031 * 18 16 14 29 29 H 1.09002 * 109.22622 * 49.64651 * 19 18 16 30 30 H 1.09000 * 109.22338 * 169.04793 * 19 18 16 31 31 H 1.08996 * 109.39475 * 190.80440 * 20 19 18 32 32 H 1.09005 * 109.38925 * 310.50514 * 20 19 18 33 33 H 1.08996 * 109.59306 * 177.14309 * 21 20 19 34 34 H 1.08999 * 109.69884 * 56.79606 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9043 0.0016 11 8 3.8196 -3.5391 -1.2345 12 8 3.8206 -3.5364 1.2395 13 7 5.7659 -2.7593 0.0001 14 6 6.3948 -2.2076 1.0567 15 8 5.7526 -1.8169 2.0086 16 6 7.8961 -2.0762 1.0556 17 1 8.2539 -1.9623 0.0324 18 6 8.3046 -0.8531 1.8810 19 6 9.8186 -0.6710 1.8279 20 6 10.5217 -1.7678 2.6221 21 6 10.3954 -3.1062 1.8911 22 16 8.6378 -3.5598 1.7985 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6795 0.8894 25 1 3.8746 -0.6808 -0.8905 26 1 6.2795 -3.0714 -0.7612 27 1 7.9932 -0.9945 2.9160 28 1 7.8189 0.0350 1.4766 29 1 10.1488 -0.7116 0.7899 30 1 10.0782 0.3000 2.2495 31 1 11.5762 -1.5152 2.7326 32 1 10.0653 -1.8494 3.6086 33 1 10.9425 -3.8742 2.4377 34 1 10.8023 -3.0146 0.8841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409520.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:38 Heat of formation + Delta-G solvation = -123.306436 kcal Electronic energy + Delta-G solvation = -19795.844420 eV Core-core repulsion = 16560.727551 eV Total energy + Delta-G solvation = -3235.116869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13063 -36.98677 -36.37068 -35.30779 -34.33660 -33.27711 -32.03491 -29.84480 -28.11394 -24.32892 -23.09342 -21.57044 -21.01317 -19.34502 -18.11460 -17.60980 -17.15913 -16.58920 -15.91289 -15.44197 -15.25074 -14.75939 -14.46836 -14.36048 -14.19237 -13.88305 -13.43557 -13.02981 -12.74597 -12.55113 -12.16840 -12.00023 -11.76988 -11.69091 -11.42423 -11.32678 -11.29005 -11.08372 -10.88788 -10.72838 -10.36600 -10.18270 -9.97117 -9.87367 -9.44377 -8.84984 -7.99794 -6.33329 -4.42934 0.80715 0.96881 2.05779 2.51778 2.96918 3.13266 3.22119 3.23451 4.00001 4.17165 4.20796 4.35159 4.42725 4.43519 4.65995 4.73490 4.83213 4.96281 5.07644 5.10513 5.16850 5.23255 5.44431 5.58231 5.61182 5.73114 5.95431 6.13319 6.26701 6.75904 7.14157 7.48999 7.97915 8.56932 9.21019 10.77587 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.005055 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.658813 B = 5538.141366 C = 6388.967928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.091 3.909 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.087 0.913 9 C -0.458 4.458 10 S 2.576 3.424 11 O -0.957 6.957 12 O -0.940 6.940 13 N -1.056 6.056 14 C 0.554 3.446 15 O -0.469 6.469 16 C -0.085 4.085 17 H 0.115 0.885 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.088 4.088 22 S -0.211 6.211 23 H 0.272 0.728 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.428 0.572 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.180 -0.508 0.917 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.116 4.116 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.105 0.895 9 C -0.594 4.594 10 S 2.676 3.324 11 O -0.948 6.948 12 O -0.930 6.930 13 N -0.816 5.816 14 C 0.336 3.664 15 O -0.339 6.339 16 C -0.218 4.218 17 H 0.134 0.866 18 C -0.152 4.152 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.236 4.236 22 S 0.015 5.985 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.099 0.901 26 H 0.263 0.737 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.604 -1.934 1.965 22.772 hybrid contribution 1.364 2.349 -0.979 2.887 sum 23.969 0.415 0.987 23.993 Atomic orbital electron populations 1.69860 1.06257 1.27883 1.47335 1.24850 0.94745 0.99127 0.92872 0.86735 0.80667 0.82956 0.78939 1.19580 1.20430 1.18597 1.20024 0.84676 0.96457 1.56129 0.89458 1.28107 1.08695 1.16262 1.06333 1.06418 0.71468 0.80162 0.74321 1.93548 1.81043 1.74868 1.45339 1.93563 1.80747 1.74072 1.44599 1.55550 1.31417 1.68160 1.26512 1.19560 0.89439 0.75808 0.81552 1.90926 1.66912 1.43987 1.32068 1.23483 0.94982 0.98914 1.04444 0.86648 1.21709 0.96085 0.95505 1.01916 1.21536 0.94367 0.99652 1.00966 1.21740 1.01537 0.93052 1.00043 1.23558 0.94372 1.01317 1.04378 1.87404 1.06520 1.21487 1.83114 0.91759 0.88495 0.90114 0.73746 0.88824 0.89907 0.91554 0.90331 0.90587 0.90139 0.87276 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 3 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.53 -15.20 9.68 -34.44 -0.33 -15.54 16 8 H 0.09 2.66 7.96 -52.49 -0.42 2.25 16 9 C -0.46 -10.63 4.71 36.01 0.17 -10.46 16 10 S 2.58 54.75 5.03 -107.50 -0.54 54.21 16 11 O -0.96 -21.59 18.08 -57.54 -1.04 -22.63 16 12 O -0.94 -23.41 17.04 -64.78 -1.10 -24.51 16 13 N -1.06 -16.23 5.60 31.22 0.17 -16.06 16 14 C 0.55 8.69 6.65 -10.99 -0.07 8.62 16 15 O -0.47 -9.22 14.34 -11.56 -0.17 -9.39 16 16 C -0.08 -0.94 2.91 -27.83 -0.08 -1.02 16 17 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.11 -1.11 4.59 -26.89 -0.12 -1.24 16 19 C -0.13 -0.86 5.62 -27.16 -0.15 -1.01 16 20 C -0.12 -0.78 5.74 -26.94 -0.15 -0.94 16 21 C -0.09 -0.60 6.46 37.17 0.24 -0.36 16 22 S -0.21 -2.37 21.68 -107.50 -2.33 -4.70 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.10 2.23 6.25 -51.92 -0.32 1.90 16 25 H 0.08 1.64 7.57 -51.92 -0.39 1.25 16 26 H 0.43 4.67 8.79 -34.47 -0.30 4.36 16 27 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.58 8.06 -51.93 -0.42 0.17 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -36.50 307.49 -9.26 -45.76 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.39 Total: 1.63 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -0.61 Total: -19.45 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.95 Total: -41.56 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -2.31 Total: -56.52 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 52.38 SS G_CDS: -2.87 Total: 49.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.50 -9.26 -45.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409520.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.544 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds