Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99702 * 2 1 4 4 H 1.48498 * 109.47092 * 269.99728 * 3 2 1 5 5 H 1.48497 * 109.47501 * 30.00000 * 3 2 1 6 6 H 1.48504 * 109.47088 * 150.00101 * 3 2 1 7 7 C 1.37873 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99948 * 179.97438 * 7 2 1 10 10 S 1.81403 * 109.47181 * 179.97438 * 9 7 2 11 11 O 1.42097 * 110.53823 * 68.37510 * 10 9 7 12 12 O 1.42101 * 110.54006 * 291.62481 * 10 9 7 13 13 N 1.65596 * 104.44879 * 179.97438 * 10 9 7 14 14 C 1.34773 * 120.00034 * 65.00223 * 13 10 9 15 15 O 1.21287 * 120.00129 * 359.97438 * 14 13 10 16 16 C 1.50701 * 120.00171 * 179.97438 * 14 13 10 17 17 H 1.08997 * 109.68188 * 29.67594 * 16 14 13 18 18 C 1.53101 * 109.57775 * 149.99971 * 16 14 13 19 19 C 1.52581 * 109.95693 * 182.83165 * 18 16 14 20 20 C 1.52577 * 110.69350 * 289.34546 * 19 18 16 21 21 C 1.53019 * 110.00025 * 70.70304 * 20 19 18 22 22 S 1.81747 * 109.57448 * 269.35390 * 16 14 13 23 23 H 0.97001 * 120.00165 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47020 * 59.99800 * 9 7 2 25 25 H 1.08999 * 109.47280 * 299.99795 * 9 7 2 26 26 H 0.96999 * 120.00657 * 245.00121 * 13 10 9 27 27 H 1.09003 * 109.39229 * 62.68250 * 18 16 14 28 28 H 1.08998 * 109.38918 * 302.98031 * 18 16 14 29 29 H 1.09002 * 109.22622 * 49.64651 * 19 18 16 30 30 H 1.09000 * 109.22338 * 169.04793 * 19 18 16 31 31 H 1.08996 * 109.39475 * 190.80440 * 20 19 18 32 32 H 1.09005 * 109.38925 * 310.50514 * 20 19 18 33 33 H 1.08996 * 109.59306 * 177.14309 * 21 20 19 34 34 H 1.08999 * 109.69884 * 56.79606 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 16 4.1163 -2.9043 0.0016 11 8 3.8196 -3.5391 -1.2345 12 8 3.8206 -3.5364 1.2395 13 7 5.7659 -2.7593 0.0001 14 6 6.3948 -2.2076 1.0567 15 8 5.7526 -1.8169 2.0086 16 6 7.8961 -2.0762 1.0556 17 1 8.2539 -1.9623 0.0324 18 6 8.3046 -0.8531 1.8810 19 6 9.8186 -0.6710 1.8279 20 6 10.5217 -1.7678 2.6221 21 6 10.3954 -3.1062 1.8911 22 16 8.6378 -3.5598 1.7985 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6795 0.8894 25 1 3.8746 -0.6808 -0.8905 26 1 6.2795 -3.0714 -0.7612 27 1 7.9932 -0.9945 2.9160 28 1 7.8189 0.0350 1.4766 29 1 10.1488 -0.7116 0.7899 30 1 10.0782 0.3000 2.2495 31 1 11.5762 -1.5152 2.7326 32 1 10.0653 -1.8494 3.6086 33 1 10.9425 -3.8742 2.4377 34 1 10.8023 -3.0146 0.8841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409520.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = -152.065631 kcal Electronic energy + Delta-G solvation = -19797.091512 eV Core-core repulsion = 16560.727551 eV Total energy + Delta-G solvation = -3236.363961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41439 -38.23964 -37.57631 -37.14692 -35.74398 -35.37872 -32.77206 -31.87346 -28.80644 -25.34537 -24.95140 -22.63430 -21.67074 -20.87924 -19.68901 -19.16983 -18.45487 -18.04244 -17.56515 -16.72384 -16.33796 -16.22321 -16.10257 -15.44070 -15.05103 -14.76028 -14.55279 -14.40288 -14.22618 -13.82453 -13.64844 -13.61450 -13.29735 -13.19790 -12.67411 -12.63962 -12.39604 -12.39360 -12.12588 -11.92254 -11.89952 -11.76325 -11.33153 -11.21916 -10.96466 -10.69395 -8.82590 -8.48781 -6.66607 -0.91210 0.04021 1.29438 1.33453 1.34275 1.41957 1.45444 1.53048 2.24663 2.63765 2.81800 2.91023 3.26567 3.45454 3.76704 3.89876 3.91686 4.07865 4.14795 4.32390 4.42254 4.43255 4.65286 4.72653 4.94159 5.02214 5.11713 5.13773 5.17429 5.38172 5.58238 5.76776 6.27609 6.36978 7.02073 8.66435 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023315 B = 0.005055 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.658813 B = 5538.141366 C = 6388.967928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.028 3.972 3 Si 0.950 3.050 4 H -0.246 1.246 5 H -0.275 1.275 6 H -0.241 1.241 7 C -0.560 4.560 8 H 0.043 0.957 9 C -0.468 4.468 10 S 2.604 3.396 11 O -0.974 6.974 12 O -0.983 6.983 13 N -1.036 6.036 14 C 0.549 3.451 15 O -0.513 6.513 16 C -0.070 4.070 17 H 0.156 0.844 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.068 4.068 22 S -0.279 6.279 23 H 0.278 0.722 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.450 0.550 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.366 1.264 -0.089 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.174 4.174 3 Si 0.770 3.230 4 H -0.170 1.170 5 H -0.200 1.200 6 H -0.164 1.164 7 C -0.599 4.599 8 H 0.061 0.939 9 C -0.603 4.603 10 S 2.704 3.296 11 O -0.965 6.965 12 O -0.974 6.974 13 N -0.802 5.802 14 C 0.334 3.666 15 O -0.385 6.385 16 C -0.203 4.203 17 H 0.174 0.826 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.216 4.216 22 S -0.054 6.054 23 H 0.088 0.912 24 H 0.121 0.879 25 H 0.135 0.865 26 H 0.290 0.710 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 26.807 -0.189 0.925 26.824 hybrid contribution 0.104 1.690 -0.629 1.806 sum 26.911 1.501 0.296 26.954 Atomic orbital electron populations 1.70004 1.08420 1.29455 1.48643 1.25992 0.95737 1.03733 0.91943 0.85666 0.79826 0.77005 0.80528 1.16985 1.19981 1.16397 1.20282 0.87711 0.95229 1.56629 0.93927 1.28118 1.05377 1.18648 1.08127 1.05221 0.72557 0.78867 0.72983 1.93516 1.82374 1.74890 1.45693 1.93508 1.82537 1.74735 1.46580 1.54948 1.29332 1.68180 1.27788 1.20505 0.91537 0.74219 0.80331 1.90909 1.68236 1.45865 1.33532 1.23511 0.90757 0.99063 1.06991 0.82588 1.21765 0.98690 0.94828 1.00207 1.21532 0.91609 1.00338 1.02409 1.21753 1.02926 0.92575 0.99081 1.23698 0.89913 1.01867 1.06083 1.87684 1.11456 1.22461 1.83760 0.91241 0.87917 0.86458 0.71014 0.91338 0.89727 0.89511 0.89178 0.87847 0.91730 0.86100 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.96 21.45 0.30 -57.02 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.95 41.62 27.47 68.60 1.88 43.50 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 7 C -0.56 -32.86 9.68 25.60 0.25 -32.61 16 8 H 0.04 2.78 7.96 -2.91 -0.02 2.75 16 9 C -0.47 -21.52 4.71 71.24 0.34 -21.18 16 10 S 2.60 111.40 5.03 -56.49 -0.28 111.12 16 11 O -0.97 -44.07 18.08 -127.65 -2.31 -46.37 16 12 O -0.98 -50.67 17.04 -120.72 -2.06 -52.73 16 13 N -1.04 -30.33 5.60 -173.53 -0.97 -31.30 16 14 C 0.55 16.51 6.65 87.66 0.58 17.09 16 15 O -0.51 -20.17 14.34 13.31 0.19 -19.98 16 16 C -0.07 -1.37 2.91 29.88 0.09 -1.28 16 17 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.12 -2.00 4.59 30.49 0.14 -1.86 16 19 C -0.12 -1.14 5.62 30.31 0.17 -0.97 16 20 C -0.12 -1.10 5.74 30.46 0.17 -0.92 16 21 C -0.07 -0.68 6.46 71.99 0.46 -0.21 16 22 S -0.28 -5.77 21.68 -56.49 -1.22 -6.99 16 23 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 24 H 0.10 4.63 6.25 -2.39 -0.01 4.62 16 25 H 0.12 4.49 7.57 -2.39 -0.02 4.47 16 26 H 0.45 8.70 8.79 -96.75 -0.85 7.85 16 27 H 0.07 1.52 7.86 -2.39 -0.02 1.51 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 0.52 8.08 -2.39 -0.02 0.50 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.80 8.06 -2.38 -0.02 0.78 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -84.07 307.49 -1.59 -85.66 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.21 Total: 13.96 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 2.67 Total: -39.85 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -0.67 Total: -88.31 kcal Atomic # 8 Polarization: -114.91 SS G_CDS: -4.17 Total: -119.08 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.50 kcal Atomic # 16 Polarization: 105.64 SS G_CDS: -1.51 Total: 104.13 kcal Total: -84.07 -1.59 -85.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409520.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.406 kcal (2) G-P(sol) polarization free energy of solvation -84.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds