Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 S 1.81402 * 109.47102 * 180.27762 * 9 7 2 11 11 O 1.42099 * 110.54424 * 291.62872 * 10 9 7 12 12 O 1.42098 * 110.54205 * 68.37996 * 10 9 7 13 13 N 1.65601 * 104.45062 * 180.02562 * 10 9 7 14 14 C 1.34770 * 120.00138 * 64.99815 * 13 10 9 15 15 O 1.21286 * 119.99991 * 0.02562 * 14 13 10 16 16 C 1.50700 * 120.00319 * 180.02562 * 14 13 10 17 17 H 1.09003 * 109.57368 * 335.00001 * 16 14 13 18 18 C 1.53097 * 109.57603 * 214.74749 * 16 14 13 19 19 C 1.52572 * 109.96402 * 177.29650 * 18 16 14 20 20 C 1.52580 * 110.83929 * 70.48180 * 19 18 16 21 21 C 1.53096 * 109.95885 * 289.36997 * 20 19 18 22 22 S 1.81743 * 109.57966 * 95.25744 * 16 14 13 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 0.97001 * 119.99832 * 245.00622 * 13 10 9 27 27 H 1.08994 * 109.39100 * 297.31175 * 18 16 14 28 28 H 1.08999 * 109.39284 * 57.01954 * 18 16 14 29 29 H 1.09001 * 109.12985 * 310.15205 * 19 18 16 30 30 H 1.09001 * 109.16902 * 190.83897 * 19 18 16 31 31 H 1.08998 * 109.38901 * 169.22091 * 20 19 18 32 32 H 1.08994 * 109.39135 * 49.52101 * 20 19 18 33 33 H 1.09007 * 109.57493 * 303.22217 * 21 20 19 34 34 H 1.08994 * 109.68482 * 182.89681 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 16 4.1163 -2.9042 -0.0117 11 8 3.8253 -3.5403 1.2252 12 8 3.8150 -3.5353 -1.2487 13 7 5.7659 -2.7592 -0.0177 14 6 6.3980 -2.2111 1.0389 15 8 5.7587 -1.8244 1.9943 16 6 7.8992 -2.0786 1.0332 17 1 8.3295 -2.8287 0.3696 18 6 8.4372 -2.2801 2.4523 19 6 9.9615 -2.2143 2.4457 20 6 10.4423 -0.7904 2.1824 21 6 10.1589 -0.4036 0.7285 22 16 8.3619 -0.4183 0.4568 23 1 -0.4850 0.8400 -0.0004 24 1 3.8713 -0.6783 -0.8962 25 1 3.8786 -0.6819 0.8837 26 1 6.2772 -3.0688 -0.7817 27 1 8.0461 -1.4973 3.1021 28 1 8.1168 -3.2525 2.8262 29 1 10.3441 -2.8724 1.6655 30 1 10.3383 -2.5474 3.4128 31 1 11.5141 -0.7297 2.3707 32 1 9.9200 -0.1032 2.8480 33 1 10.6351 -1.1211 0.0602 34 1 10.5499 0.5945 0.5312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = -123.085738 kcal Electronic energy + Delta-G solvation = -19828.141044 eV Core-core repulsion = 16593.033745 eV Total energy + Delta-G solvation = -3235.107299 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12734 -36.98573 -36.37728 -35.32418 -34.33789 -33.24195 -32.03448 -29.80737 -28.11519 -24.32134 -23.07380 -21.57449 -21.02383 -19.34405 -18.12021 -17.57566 -17.16218 -16.59125 -15.89627 -15.44445 -15.16406 -14.85340 -14.45308 -14.35886 -14.14818 -13.88017 -13.45064 -13.00861 -12.70108 -12.52810 -12.17073 -12.00311 -11.76927 -11.65521 -11.43731 -11.34399 -11.28969 -11.08885 -10.84178 -10.72616 -10.34337 -10.15867 -9.94466 -9.85381 -9.42311 -8.81020 -7.99300 -6.30129 -4.39844 0.76570 1.03728 2.05441 2.48090 2.99142 3.19044 3.27640 3.31722 3.99739 4.17395 4.25796 4.35257 4.41759 4.43471 4.65376 4.73556 4.85071 4.96121 5.07975 5.11306 5.16897 5.23311 5.44345 5.57747 5.60353 5.72768 5.94685 6.18785 6.31490 6.75949 7.17645 7.49198 8.00735 8.59389 9.24682 10.80600 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.005436 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.940089 B = 5149.626061 C = 5965.519645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.534 4.534 8 H 0.087 0.913 9 C -0.457 4.457 10 S 2.576 3.424 11 O -0.943 6.943 12 O -0.958 6.958 13 N -1.056 6.056 14 C 0.554 3.446 15 O -0.469 6.469 16 C -0.084 4.084 17 H 0.114 0.886 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.087 4.087 22 S -0.211 6.211 23 H 0.272 0.728 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.428 0.572 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.317 -1.527 1.293 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.115 4.115 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.573 4.573 8 H 0.105 0.895 9 C -0.593 4.593 10 S 2.676 3.324 11 O -0.933 6.933 12 O -0.948 6.948 13 N -0.816 5.816 14 C 0.336 3.664 15 O -0.338 6.338 16 C -0.218 4.218 17 H 0.132 0.868 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.164 4.164 21 C -0.235 4.235 22 S 0.015 5.985 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.262 0.738 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.589 -1.179 1.599 22.676 hybrid contribution 1.546 0.348 -0.153 1.592 sum 24.135 -0.830 1.446 24.193 Atomic orbital electron populations 1.69861 1.06262 1.27883 1.47417 1.24836 0.94734 0.99138 0.92791 0.86762 0.80817 0.82884 0.79091 1.19530 1.20450 1.18324 1.20016 0.84660 0.96419 1.56189 0.89498 1.28086 1.08611 1.16024 1.06533 1.06417 0.71442 0.80248 0.74263 1.93551 1.80904 1.74098 1.44745 1.93547 1.80941 1.75114 1.45224 1.55550 1.31417 1.68538 1.26141 1.19561 0.89438 0.75732 0.81658 1.90928 1.66978 1.43847 1.32090 1.23469 0.95578 0.99639 1.03086 0.86827 1.21697 0.95414 1.04883 0.93154 1.21532 0.94955 0.96908 1.03103 1.21751 1.02074 0.97474 0.95074 1.23563 0.93741 1.06150 1.00090 1.87413 1.08965 1.18292 1.83862 0.91785 0.89983 0.88417 0.73768 0.88842 0.89931 0.91589 0.90348 0.90558 0.90131 0.89527 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.09 2.66 5.47 -17.82 -0.10 2.57 16 3 Si 0.88 21.26 27.46 -169.99 -4.67 16.60 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.06 6.55 56.52 0.37 -5.69 16 7 C -0.53 -15.39 9.68 -34.44 -0.33 -15.72 16 8 H 0.09 2.67 7.96 -52.49 -0.42 2.25 16 9 C -0.46 -10.88 4.71 36.01 0.17 -10.71 16 10 S 2.58 54.80 5.03 -107.50 -0.54 54.26 16 11 O -0.94 -23.09 17.04 -64.80 -1.10 -24.20 16 12 O -0.96 -21.59 18.08 -57.54 -1.04 -22.63 16 13 N -1.06 -16.21 5.60 31.22 0.17 -16.04 16 14 C 0.55 8.70 6.59 -10.99 -0.07 8.63 16 15 O -0.47 -9.24 14.43 -11.61 -0.17 -9.41 16 16 C -0.08 -0.93 2.90 -27.83 -0.08 -1.02 16 17 H 0.11 0.90 8.11 -51.93 -0.42 0.48 16 18 C -0.11 -1.10 4.66 -26.90 -0.13 -1.22 16 19 C -0.13 -0.85 5.61 -27.17 -0.15 -1.00 16 20 C -0.12 -0.79 5.75 -26.90 -0.15 -0.94 16 21 C -0.09 -0.61 6.45 37.21 0.24 -0.37 16 22 S -0.21 -2.40 21.69 -107.50 -2.33 -4.73 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.08 1.75 7.56 -51.92 -0.39 1.36 16 25 H 0.10 2.33 6.26 -51.92 -0.32 2.00 16 26 H 0.43 4.62 8.77 -34.47 -0.30 4.32 16 27 H 0.09 1.06 7.87 -51.93 -0.41 0.66 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16 34 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -36.55 307.56 -9.26 -45.81 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.39 Total: 1.27 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.61 Total: -19.78 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.95 Total: -41.83 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -2.31 Total: -56.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -2.87 Total: 49.53 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.55 -9.26 -45.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.274 kcal (2) G-P(sol) polarization free energy of solvation -36.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds