Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 S 1.81402 * 109.47102 * 180.27762 * 9 7 2 11 11 O 1.42099 * 110.54424 * 291.62872 * 10 9 7 12 12 O 1.42098 * 110.54205 * 68.37996 * 10 9 7 13 13 N 1.65601 * 104.45062 * 180.02562 * 10 9 7 14 14 C 1.34770 * 120.00138 * 64.99815 * 13 10 9 15 15 O 1.21286 * 119.99991 * 0.02562 * 14 13 10 16 16 C 1.50700 * 120.00319 * 180.02562 * 14 13 10 17 17 H 1.09003 * 109.57368 * 335.00001 * 16 14 13 18 18 C 1.53097 * 109.57603 * 214.74749 * 16 14 13 19 19 C 1.52572 * 109.96402 * 177.29650 * 18 16 14 20 20 C 1.52580 * 110.83929 * 70.48180 * 19 18 16 21 21 C 1.53096 * 109.95885 * 289.36997 * 20 19 18 22 22 S 1.81743 * 109.57966 * 95.25744 * 16 14 13 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 0.97001 * 119.99832 * 245.00622 * 13 10 9 27 27 H 1.08994 * 109.39100 * 297.31175 * 18 16 14 28 28 H 1.08999 * 109.39284 * 57.01954 * 18 16 14 29 29 H 1.09001 * 109.12985 * 310.15205 * 19 18 16 30 30 H 1.09001 * 109.16902 * 190.83897 * 19 18 16 31 31 H 1.08998 * 109.38901 * 169.22091 * 20 19 18 32 32 H 1.08994 * 109.39135 * 49.52101 * 20 19 18 33 33 H 1.09007 * 109.57493 * 303.22217 * 21 20 19 34 34 H 1.08994 * 109.68482 * 182.89681 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 16 4.1163 -2.9042 -0.0117 11 8 3.8253 -3.5403 1.2252 12 8 3.8150 -3.5353 -1.2487 13 7 5.7659 -2.7592 -0.0177 14 6 6.3980 -2.2111 1.0389 15 8 5.7587 -1.8244 1.9943 16 6 7.8992 -2.0786 1.0332 17 1 8.3295 -2.8287 0.3696 18 6 8.4372 -2.2801 2.4523 19 6 9.9615 -2.2143 2.4457 20 6 10.4423 -0.7904 2.1824 21 6 10.1589 -0.4036 0.7285 22 16 8.3619 -0.4183 0.4568 23 1 -0.4850 0.8400 -0.0004 24 1 3.8713 -0.6783 -0.8962 25 1 3.8786 -0.6819 0.8837 26 1 6.2772 -3.0688 -0.7817 27 1 8.0461 -1.4973 3.1021 28 1 8.1168 -3.2525 2.8262 29 1 10.3441 -2.8724 1.6655 30 1 10.3383 -2.5474 3.4128 31 1 11.5141 -0.7297 2.3707 32 1 9.9200 -0.1032 2.8480 33 1 10.6351 -1.1211 0.0602 34 1 10.5499 0.5945 0.5312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409523.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = -151.710133 kcal Electronic energy + Delta-G solvation = -19829.382291 eV Core-core repulsion = 16593.033745 eV Total energy + Delta-G solvation = -3236.348545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41950 -38.24646 -37.58210 -37.16394 -35.75363 -35.38635 -32.77635 -31.87502 -28.81190 -25.31498 -24.99254 -22.65265 -21.68184 -20.88903 -19.71150 -19.15268 -18.45079 -18.08345 -17.55923 -16.63743 -16.42533 -16.27278 -16.06339 -15.45791 -15.06031 -14.77102 -14.54287 -14.42570 -14.22551 -13.84802 -13.68698 -13.59379 -13.30967 -13.21033 -12.69566 -12.66401 -12.40839 -12.38816 -12.13454 -11.93633 -11.90860 -11.77215 -11.36881 -11.20393 -10.97597 -10.69960 -8.81325 -8.50293 -6.67125 -0.92605 0.07124 1.23168 1.28235 1.32463 1.43501 1.44021 1.56112 2.22954 2.61639 2.80161 2.89877 3.24759 3.45606 3.75823 3.89163 3.90938 4.07111 4.13903 4.32531 4.41081 4.42537 4.65023 4.71854 4.93288 5.01612 5.11057 5.12583 5.16612 5.37430 5.57653 5.76034 6.27098 6.36005 7.01766 8.64712 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020242 B = 0.005436 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.940089 B = 5149.626061 C = 5965.519645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.033 3.967 3 Si 0.944 3.056 4 H -0.248 1.248 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.557 4.557 8 H 0.047 0.953 9 C -0.472 4.472 10 S 2.609 3.391 11 O -0.980 6.980 12 O -0.972 6.972 13 N -1.036 6.036 14 C 0.549 3.451 15 O -0.513 6.513 16 C -0.071 4.071 17 H 0.153 0.847 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.069 4.069 22 S -0.274 6.274 23 H 0.279 0.721 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.450 0.550 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.411 -0.844 0.647 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.170 4.170 3 Si 0.764 3.236 4 H -0.172 1.172 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.596 4.596 8 H 0.065 0.935 9 C -0.606 4.606 10 S 2.708 3.292 11 O -0.970 6.970 12 O -0.963 6.963 13 N -0.803 5.803 14 C 0.334 3.666 15 O -0.385 6.385 16 C -0.203 4.203 17 H 0.171 0.829 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.163 4.163 21 C -0.216 4.216 22 S -0.048 6.048 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.116 0.884 26 H 0.290 0.710 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 26.693 -0.510 0.917 26.713 hybrid contribution 0.329 0.072 0.069 0.343 sum 27.021 -0.438 0.987 27.043 Atomic orbital electron populations 1.69989 1.08189 1.29395 1.48674 1.25888 0.95674 1.03392 0.92024 0.85744 0.79709 0.77620 0.80479 1.17166 1.19625 1.17119 1.20271 0.87537 0.95294 1.56476 0.93509 1.28137 1.05555 1.19182 1.07728 1.05069 0.72527 0.78503 0.73068 1.93503 1.82613 1.74361 1.46487 1.93520 1.82297 1.74852 1.45609 1.54954 1.29334 1.68525 1.27447 1.20511 0.91547 0.74122 0.80445 1.90912 1.68318 1.45584 1.33729 1.23483 0.91441 1.00536 1.04874 0.82939 1.21751 0.97939 1.03905 0.91839 1.21525 0.92093 0.97628 1.04597 1.21763 1.03475 0.96813 0.94257 1.23709 0.89266 1.07645 1.01001 1.87635 1.14174 1.19047 1.83933 0.91211 0.87130 0.88361 0.70962 0.91271 0.90068 0.89580 0.89177 0.87811 0.91697 0.87201 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 2 C 0.03 1.93 5.47 84.65 0.46 2.39 16 3 Si 0.94 43.54 27.46 68.60 1.88 45.42 16 4 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -10.88 6.55 99.48 0.65 -10.22 16 7 C -0.56 -33.19 9.68 25.60 0.25 -32.94 16 8 H 0.05 3.05 7.96 -2.91 -0.02 3.03 16 9 C -0.47 -22.56 4.71 71.24 0.34 -22.23 16 10 S 2.61 111.50 5.03 -56.49 -0.28 111.22 16 11 O -0.98 -49.14 17.04 -120.71 -2.06 -51.19 16 12 O -0.97 -43.72 18.08 -127.65 -2.31 -46.03 16 13 N -1.04 -30.29 5.60 -173.54 -0.97 -31.26 16 14 C 0.55 16.58 6.59 87.66 0.58 17.16 16 15 O -0.51 -20.33 14.43 13.36 0.19 -20.14 16 16 C -0.07 -1.38 2.90 29.88 0.09 -1.30 16 17 H 0.15 1.76 8.11 -2.39 -0.02 1.74 16 18 C -0.11 -2.02 4.66 30.48 0.14 -1.88 16 19 C -0.12 -1.15 5.61 30.31 0.17 -0.98 16 20 C -0.12 -1.09 5.75 30.49 0.18 -0.92 16 21 C -0.07 -0.68 6.45 72.01 0.46 -0.21 16 22 S -0.27 -5.55 21.69 -56.49 -1.23 -6.78 16 23 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.11 4.59 7.56 -2.39 -0.02 4.57 16 25 H 0.10 4.70 6.26 -2.39 -0.01 4.69 16 26 H 0.45 8.59 8.77 -96.74 -0.85 7.74 16 27 H 0.07 1.55 7.87 -2.39 -0.02 1.53 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.80 8.06 -2.39 -0.02 0.78 16 33 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -83.10 307.56 -1.59 -84.69 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.22 Total: 12.34 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 2.66 Total: -40.90 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -0.67 Total: -88.62 kcal Atomic # 8 Polarization: -113.19 SS G_CDS: -4.17 Total: -117.37 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Atomic # 16 Polarization: 105.95 SS G_CDS: -1.51 Total: 104.44 kcal Total: -83.10 -1.59 -84.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409523.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.019 kcal (2) G-P(sol) polarization free energy of solvation -83.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds