Wall clock time and date at job start Tue Mar 31 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.54741 * 2 1 4 4 C 1.53006 * 109.47127 * 34.33200 * 3 2 1 5 5 N 1.46504 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99531 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00300 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.50690 * 109.47292 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99710 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00510 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00289 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99556 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47123 * 90.00097 * 14 12 10 16 16 H 1.48501 * 109.47275 * 210.00161 * 14 12 10 17 17 H 1.48497 * 109.47329 * 329.99931 * 14 12 10 18 18 C 1.53001 * 117.51878 * 145.70216 * 2 1 3 19 19 C 1.52997 * 60.00080 * 107.48241 * 18 2 1 20 20 Cl 1.80296 * 117.50048 * 252.51097 * 19 18 2 21 21 Cl 1.80309 * 117.51835 * 107.47881 * 19 18 2 22 22 H 1.09000 * 109.46984 * 85.58399 * 1 2 3 23 23 H 1.08998 * 109.46659 * 205.57734 * 1 2 3 24 24 H 1.08998 * 109.47625 * 325.58441 * 1 2 3 25 25 H 1.09001 * 109.47502 * 274.33357 * 3 2 1 26 26 H 1.09001 * 109.47289 * 154.33153 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 29 29 H 0.96992 * 119.99966 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.47224 * 299.99707 * 8 6 5 31 31 H 1.08993 * 109.47046 * 60.00641 * 8 6 5 32 32 H 1.09001 * 109.46998 * 300.00313 * 9 8 6 33 33 H 1.08996 * 109.46884 * 59.99429 * 9 8 6 34 34 H 0.97006 * 119.99727 * 179.97438 * 13 12 10 35 35 H 1.08999 * 117.49417 * 214.96996 * 18 2 1 36 36 H 1.08994 * 117.49738 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.3350 2.3543 0.8136 5 7 1.9665 3.6762 0.8130 6 6 1.3872 4.7000 1.4708 7 8 0.3434 4.5268 2.0635 8 6 2.0371 6.0597 1.4708 9 6 1.1822 7.0336 2.2842 10 6 1.8317 8.3933 2.2837 11 1 2.7615 8.5474 1.7563 12 6 1.2390 9.4408 2.9565 13 7 1.8062 10.6273 2.9564 14 14 -0.3695 9.1744 3.8681 15 1 -0.0839 8.7637 5.2663 16 1 -1.1508 10.4373 3.8729 17 1 -1.1526 8.1105 3.1898 18 6 2.2369 -1.1210 0.7646 19 6 2.2365 -1.1207 -0.7654 20 17 1.2023 -2.3407 -1.5978 21 17 3.7826 -0.7134 -1.5988 22 1 -0.3633 0.0791 -1.0246 23 1 -0.3632 -0.9270 0.4437 24 1 -0.3634 0.8477 0.5808 25 1 2.2765 1.7417 -1.0247 26 1 3.1822 1.3088 0.4451 27 1 0.3426 2.4260 0.3684 28 1 1.2484 1.9930 1.8382 29 1 2.8015 3.8146 0.3393 30 1 3.0292 5.9882 1.9164 31 1 2.1241 6.4207 0.4461 32 1 0.1898 7.1051 1.8391 33 1 1.0954 6.6723 3.3089 34 1 1.3889 11.3643 3.4295 35 1 3.1721 -0.8749 1.2676 36 1 1.6120 -1.8584 1.2682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836905503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:12 Heat of formation + Delta-G solvation = -43.632933 kcal Electronic energy + Delta-G solvation = -18491.853445 eV Core-core repulsion = 15256.104066 eV Total energy + Delta-G solvation = -3235.749379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71291 -38.94294 -36.45410 -36.41384 -34.75709 -33.47708 -31.49045 -30.51140 -28.54047 -26.22153 -23.76166 -22.72344 -21.18874 -20.02708 -19.21600 -17.25357 -16.69900 -16.27877 -15.83960 -15.72033 -15.03250 -14.58114 -14.09162 -13.95213 -13.59366 -13.22557 -13.08375 -12.79935 -12.55839 -12.47473 -12.11455 -11.96205 -11.73002 -11.64957 -11.53791 -11.41232 -11.24083 -10.95874 -10.48825 -10.17373 -10.08682 -10.04931 -9.78590 -9.26225 -9.17105 -8.90898 -8.50784 -6.03080 -4.01838 0.74616 1.74697 2.65260 3.10794 3.34882 3.37833 3.44468 3.55223 3.65434 3.78374 4.36016 4.44883 4.50856 4.80171 4.94420 5.03663 5.14087 5.24381 5.32407 5.32708 5.44312 5.51195 5.65429 5.80158 5.87325 6.07818 6.09680 6.57955 6.69392 7.36240 7.43432 7.73202 7.79617 8.49796 8.63742 9.00044 9.59983 11.09748 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.002555 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.686804 B =10956.608356 C =11467.874449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.100 4.100 4 C 0.120 3.880 5 N -0.744 5.744 6 C 0.510 3.490 7 O -0.541 6.541 8 C -0.123 4.123 9 C 0.002 3.998 10 C -0.525 4.525 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.139 4.139 19 C 0.002 3.998 20 Cl -0.095 7.095 21 Cl -0.093 7.093 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.399 0.601 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.122 0.878 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 -27.955 -8.686 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.003 4.003 5 N -0.398 5.398 6 C 0.299 3.701 7 O -0.417 6.417 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.563 4.563 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.176 4.176 19 C -0.050 4.050 20 Cl -0.068 7.068 21 Cl -0.066 7.066 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.233 0.767 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.294 -27.961 -8.321 29.201 hybrid contribution -0.187 -0.200 0.015 0.274 sum 1.107 -28.160 -8.306 29.381 Atomic orbital electron populations 1.21661 0.89704 1.03852 1.03716 1.22297 0.96728 0.90955 0.98063 1.21440 0.99105 0.91082 1.02164 1.21324 0.96467 0.82327 1.00226 1.46160 1.27742 1.09775 1.56099 1.21536 0.84870 0.86751 0.76952 1.90652 1.23391 1.84416 1.43202 1.21671 1.01025 0.90208 1.03344 1.19366 0.95461 0.93664 0.95150 1.21117 1.09530 0.92351 1.33301 0.90944 1.24978 0.97410 0.94984 0.95914 1.69914 1.39761 1.01164 1.43424 0.86789 0.84355 0.77700 0.80669 1.20250 1.21460 1.18520 1.24236 1.03933 1.00465 0.88978 1.27069 0.87727 0.98340 0.91858 1.98747 1.68170 1.58486 1.81362 1.98755 1.33145 1.93441 1.81290 0.90827 0.91371 0.89632 0.89651 0.90060 0.91066 0.91475 0.76717 0.89617 0.89574 0.95837 0.96293 0.92720 0.86026 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.53 37.16 0.32 -0.57 16 2 C -0.08 -0.53 2.47 -154.51 -0.38 -0.91 16 3 C -0.10 -0.73 4.56 -26.73 -0.12 -0.85 16 4 C 0.12 1.23 4.68 -4.04 -0.02 1.21 16 5 N -0.74 -9.11 5.56 -60.29 -0.33 -9.44 16 6 C 0.51 8.94 7.83 -10.98 -0.09 8.85 16 7 O -0.54 -11.65 15.98 5.56 0.09 -11.56 16 8 C -0.12 -2.32 5.64 -27.88 -0.16 -2.48 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.53 -14.97 9.66 -34.45 -0.33 -15.30 16 11 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 14 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 18 C -0.14 -0.78 9.51 -26.73 -0.25 -1.04 16 19 C 0.00 0.01 3.61 -26.73 -0.10 -0.09 16 20 Cl -0.09 -0.74 28.32 -51.86 -1.47 -2.21 16 21 Cl -0.09 -0.75 28.32 -51.86 -1.47 -2.22 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.40 7.90 -51.93 -0.41 -0.01 16 24 H 0.09 0.62 5.59 -51.93 -0.29 0.33 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.54 7.90 -51.93 -0.41 0.13 16 27 H 0.07 0.78 6.45 -51.93 -0.33 0.44 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.02 0.61 7.15 -51.93 -0.37 0.23 16 33 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 35 H 0.12 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.12 0.56 8.05 -51.93 -0.42 0.14 16 LS Contribution 329.74 15.07 4.97 4.97 Total: -1.00 -33.59 329.74 -8.52 -42.11 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.09 Total: -3.00 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.32 Total: -9.29 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.44 Total: -36.65 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -2.94 Total: -4.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.59 -8.52 -42.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836905503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.519 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds