Wall clock time and date at job start Tue Mar 31 2020 07:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.54741 * 2 1 4 4 C 1.53006 * 109.47127 * 34.33200 * 3 2 1 5 5 N 1.46504 * 109.46883 * 180.02562 * 4 3 2 6 6 C 1.34775 * 119.99531 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00300 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99773 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.50690 * 109.47292 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99710 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00510 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00289 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99556 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47123 * 90.00097 * 14 12 10 16 16 H 1.48501 * 109.47275 * 210.00161 * 14 12 10 17 17 H 1.48497 * 109.47329 * 329.99931 * 14 12 10 18 18 C 1.53001 * 117.51878 * 145.70216 * 2 1 3 19 19 C 1.52997 * 60.00080 * 107.48241 * 18 2 1 20 20 Cl 1.80296 * 117.50048 * 252.51097 * 19 18 2 21 21 Cl 1.80309 * 117.51835 * 107.47881 * 19 18 2 22 22 H 1.09000 * 109.46984 * 85.58399 * 1 2 3 23 23 H 1.08998 * 109.46659 * 205.57734 * 1 2 3 24 24 H 1.08998 * 109.47625 * 325.58441 * 1 2 3 25 25 H 1.09001 * 109.47502 * 274.33357 * 3 2 1 26 26 H 1.09001 * 109.47289 * 154.33153 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 28 28 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 29 29 H 0.96992 * 119.99966 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.47224 * 299.99707 * 8 6 5 31 31 H 1.08993 * 109.47046 * 60.00641 * 8 6 5 32 32 H 1.09001 * 109.46998 * 300.00313 * 9 8 6 33 33 H 1.08996 * 109.46884 * 59.99429 * 9 8 6 34 34 H 0.97006 * 119.99727 * 179.97438 * 13 12 10 35 35 H 1.08999 * 117.49417 * 214.96996 * 18 2 1 36 36 H 1.08994 * 117.49738 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.3350 2.3543 0.8136 5 7 1.9665 3.6762 0.8130 6 6 1.3872 4.7000 1.4708 7 8 0.3434 4.5268 2.0635 8 6 2.0371 6.0597 1.4708 9 6 1.1822 7.0336 2.2842 10 6 1.8317 8.3933 2.2837 11 1 2.7615 8.5474 1.7563 12 6 1.2390 9.4408 2.9565 13 7 1.8062 10.6273 2.9564 14 14 -0.3695 9.1744 3.8681 15 1 -0.0839 8.7637 5.2663 16 1 -1.1508 10.4373 3.8729 17 1 -1.1526 8.1105 3.1898 18 6 2.2369 -1.1210 0.7646 19 6 2.2365 -1.1207 -0.7654 20 17 1.2023 -2.3407 -1.5978 21 17 3.7826 -0.7134 -1.5988 22 1 -0.3633 0.0791 -1.0246 23 1 -0.3632 -0.9270 0.4437 24 1 -0.3634 0.8477 0.5808 25 1 2.2765 1.7417 -1.0247 26 1 3.1822 1.3088 0.4451 27 1 0.3426 2.4260 0.3684 28 1 1.2484 1.9930 1.8382 29 1 2.8015 3.8146 0.3393 30 1 3.0292 5.9882 1.9164 31 1 2.1241 6.4207 0.4461 32 1 0.1898 7.1051 1.8391 33 1 1.0954 6.6723 3.3089 34 1 1.3889 11.3643 3.4295 35 1 3.1721 -0.8749 1.2676 36 1 1.6120 -1.8584 1.2682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836905503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:11 Heat of formation + Delta-G solvation = -64.944806 kcal Electronic energy + Delta-G solvation = -18492.777597 eV Core-core repulsion = 15256.104066 eV Total energy + Delta-G solvation = -3236.673531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77347 -39.79893 -37.07835 -37.00481 -35.83750 -35.46471 -33.35065 -31.51037 -29.18628 -27.93470 -24.77852 -23.32447 -22.80656 -21.31467 -19.99536 -19.14490 -17.66627 -17.20455 -17.04713 -16.81154 -16.22668 -15.83529 -15.65452 -14.88999 -14.65899 -14.41453 -14.20664 -14.03476 -13.73400 -13.39549 -13.25489 -12.89225 -12.71470 -12.52605 -12.36097 -12.35035 -12.16469 -12.07184 -11.94821 -11.82529 -11.74445 -11.38202 -11.03680 -10.79412 -10.76890 -10.58328 -10.02137 -8.30305 -6.33159 0.20014 1.19152 1.34605 1.36587 1.51593 1.72896 2.10691 2.32765 2.36332 3.05530 3.07869 3.29833 3.75517 3.86671 4.07305 4.14613 4.29987 4.44058 4.52843 4.56415 4.65230 4.73736 4.80445 4.94085 4.97450 5.02455 5.11156 5.27018 5.36041 5.47491 5.54051 5.63266 6.24950 6.62379 6.73685 7.32312 7.35099 8.85376 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.002555 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.686804 B =10956.608356 C =11467.874449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.090 4.090 4 C 0.121 3.879 5 N -0.721 5.721 6 C 0.515 3.485 7 O -0.586 6.586 8 C -0.118 4.118 9 C 0.004 3.996 10 C -0.529 4.529 11 H 0.050 0.950 12 C 0.012 3.988 13 N -0.945 5.945 14 Si 0.939 3.061 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.260 1.260 18 C -0.126 4.126 19 C -0.005 4.005 20 Cl -0.103 7.103 21 Cl -0.103 7.103 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.416 0.584 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.134 0.866 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -29.758 -8.688 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.002 4.002 5 N -0.374 5.374 6 C 0.303 3.697 7 O -0.466 6.466 8 C -0.158 4.158 9 C -0.034 4.034 10 C -0.567 4.567 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.585 5.585 14 Si 0.764 3.236 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.185 1.185 18 C -0.163 4.163 19 C -0.056 4.056 20 Cl -0.076 7.076 21 Cl -0.076 7.076 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.253 0.747 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.391 -29.798 -8.360 30.980 hybrid contribution -0.130 0.334 -0.046 0.361 sum 1.261 -29.464 -8.406 30.666 Atomic orbital electron populations 1.21642 0.89791 1.03960 1.03454 1.22257 0.96671 0.90782 0.98600 1.21343 0.99019 0.90565 1.01799 1.21438 0.96724 0.81481 1.00606 1.45905 1.27802 1.09499 1.54182 1.21130 0.84264 0.87152 0.77179 1.90639 1.25324 1.85067 1.45570 1.21501 1.00722 0.90235 1.03341 1.19223 0.95469 0.93116 0.95549 1.21452 1.08770 0.94214 1.32247 0.93202 1.25827 1.00861 0.94822 0.97069 1.70029 1.41561 1.02122 1.44817 0.85812 0.80354 0.77826 0.79623 1.19330 1.20486 1.18462 1.24398 1.04341 0.99703 0.87898 1.27195 0.87342 0.98476 0.92588 1.98748 1.68418 1.58800 1.81669 1.98755 1.33691 1.93495 1.81614 0.91169 0.90562 0.90367 0.89358 0.88833 0.91655 0.91830 0.74721 0.87923 0.88032 0.97207 0.97265 0.92412 0.84844 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.53 71.98 0.61 -0.93 16 2 C -0.08 -0.91 2.47 -52.18 -0.13 -1.04 16 3 C -0.09 -1.07 4.56 30.60 0.14 -0.93 16 4 C 0.12 2.21 4.68 86.38 0.40 2.62 16 5 N -0.72 -15.96 5.56 -463.05 -2.57 -18.54 16 6 C 0.51 17.24 7.83 87.66 0.69 17.92 16 7 O -0.59 -24.81 15.98 -3.03 -0.05 -24.85 16 8 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.53 -30.33 9.66 25.60 0.25 -30.09 16 11 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 12 C 0.01 0.70 5.47 84.65 0.46 1.16 16 13 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 14 Si 0.94 46.54 27.47 68.60 1.88 48.43 16 15 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.26 -12.79 6.54 99.48 0.65 -12.14 16 18 C -0.13 -1.09 9.51 30.59 0.29 -0.80 16 19 C 0.00 -0.06 3.61 30.59 0.11 0.05 16 20 Cl -0.10 -1.47 28.32 -2.72 -0.08 -1.55 16 21 Cl -0.10 -1.45 28.32 -2.72 -0.08 -1.53 16 22 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.08 0.76 7.90 -2.39 -0.02 0.74 16 24 H 0.08 1.04 5.59 -2.39 -0.01 1.03 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 0.93 7.90 -2.39 -0.02 0.91 16 27 H 0.07 1.33 6.45 -2.39 -0.02 1.32 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.42 6.54 8.47 -92.71 -0.79 5.76 16 30 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.01 0.49 7.15 -2.39 -0.02 0.48 16 33 H 0.01 0.46 7.53 -2.39 -0.02 0.44 16 34 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 35 H 0.13 0.87 8.05 -2.39 -0.02 0.86 16 36 H 0.13 0.85 8.05 -2.39 -0.02 0.83 16 Total: -1.00 -72.29 329.74 2.75 -69.54 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 0.25 Total: 3.15 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.09 Total: -15.86 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -2.27 Total: -77.33 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.43 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.15 Total: -3.08 kcal Total: -72.29 2.75 -69.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836905503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.599 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds