Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48506 * 109.47159 * 239.99317 * 3 2 1 5 5 H 1.48502 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47268 * 119.99671 * 3 2 1 7 7 C 1.38756 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99234 * 180.02562 * 7 2 1 9 9 O 1.34916 * 120.00503 * 0.02562 * 7 2 1 10 10 C 1.34311 * 117.00432 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99504 * 0.02562 * 10 9 7 12 12 C 1.50690 * 120.00357 * 180.02562 * 10 9 7 13 13 C 1.53003 * 109.47202 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47054 * 180.02562 * 13 12 10 15 15 O 1.21251 * 119.99781 * 359.97438 * 14 13 12 16 16 C 1.47163 * 120.00054 * 179.97438 * 14 13 12 17 17 C 1.39878 * 120.17223 * 359.97438 * 16 14 13 18 18 C 1.37864 * 119.82574 * 179.97438 * 17 16 14 19 19 C 1.38416 * 120.17287 * 0.26410 * 18 17 16 20 20 C 1.38387 * 120.35057 * 359.47933 * 19 18 17 21 21 N 1.48005 * 119.92017 * 180.26039 * 20 19 18 22 22 O 1.21793 * 120.00367 * 180.25542 * 21 20 19 23 23 O 1.21801 * 119.99590 * 0.25977 * 21 20 19 24 24 C 1.37915 * 120.17007 * 0.51825 * 20 19 18 25 25 H 0.96994 * 119.99590 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47402 * 59.99973 * 12 10 9 27 27 H 1.08999 * 109.47080 * 300.00131 * 12 10 9 28 28 H 1.08990 * 109.46988 * 59.99889 * 13 12 10 29 29 H 1.08999 * 109.46923 * 299.99876 * 13 12 10 30 30 H 1.08002 * 120.07951 * 0.02562 * 17 16 14 31 31 H 1.08002 * 119.90999 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.82966 * 179.72333 * 19 18 17 33 33 H 1.08000 * 120.08554 * 179.76383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1023 1.6963 -1.2125 5 1 1.2835 2.7465 -0.0006 6 1 3.1022 1.6964 1.2126 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0651 -3.4966 0.0005 11 8 3.2755 -3.4331 0.0010 12 6 1.3810 -4.8393 0.0000 13 6 2.4347 -5.9486 0.0007 14 6 1.7505 -7.2913 -0.0005 15 8 0.5397 -7.3547 -0.0014 16 6 2.5520 -8.5256 -0.0006 17 6 3.9491 -8.4566 -0.0001 18 6 4.6929 -9.6174 0.0003 19 6 4.0608 -10.8487 -0.0053 20 6 2.6790 -10.9254 -0.0005 21 7 2.0130 -12.2472 -0.0006 22 8 0.7971 -12.3164 -0.0011 23 8 2.6810 -13.2656 -0.0003 24 6 1.9209 -9.7734 -0.0008 25 1 -0.4849 0.8400 -0.0004 26 1 0.7585 -4.9295 -0.8902 27 1 0.7579 -4.9299 0.8897 28 1 3.0568 -5.8581 0.8911 29 1 3.0582 -5.8581 -0.8888 30 1 4.4437 -7.4965 0.0007 31 1 5.7717 -9.5657 0.0002 32 1 4.6489 -11.7545 -0.0095 33 1 0.8426 -9.8348 -0.0009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837781095.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = -97.334825 kcal Electronic energy + Delta-G solvation = -21603.720372 eV Core-core repulsion = 17791.532894 eV Total energy + Delta-G solvation = -3812.187477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.52385 -40.61968 -39.16879 -38.64506 -36.88757 -35.44497 -33.27745 -32.28715 -32.14392 -32.00962 -27.34622 -26.65881 -25.21342 -23.58836 -22.94581 -20.90394 -19.77093 -19.00394 -18.88101 -17.86118 -17.79873 -17.22792 -16.88219 -16.07057 -15.95446 -15.87130 -14.89445 -14.70200 -14.61437 -14.37589 -13.99156 -13.60691 -12.93599 -12.87325 -12.58405 -12.37978 -11.88334 -11.68315 -11.62599 -11.53845 -11.44942 -11.33537 -11.01545 -10.51486 -10.43260 -10.18859 -10.10857 -9.93079 -9.86681 -9.13350 -8.63017 -6.45831 -4.14645 -0.61902 -0.02524 0.87910 0.99238 1.85840 2.89382 3.07954 3.13927 3.18483 3.32738 3.45683 3.87147 3.90739 4.09858 4.22246 4.28878 4.33782 4.62806 4.76413 4.96515 5.04673 5.07474 5.18997 5.27847 5.39267 5.43917 5.64949 5.69793 6.01838 6.02788 6.14427 6.67394 7.13393 7.28888 7.33496 7.89345 8.62812 9.02285 9.78685 10.71882 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.045303 B = 0.002500 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.916926 B =11197.528638 C =11794.998982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.385 4.385 8 H 0.096 0.904 9 O -0.211 6.211 10 C 0.396 3.604 11 O -0.563 6.563 12 C -0.096 4.096 13 C -0.148 4.148 14 C 0.397 3.603 15 O -0.434 6.434 16 C -0.159 4.159 17 C -0.021 4.021 18 C -0.126 4.126 19 C -0.031 4.031 20 C -0.058 4.058 21 N 0.028 4.972 22 O -0.154 6.154 23 O -0.159 6.159 24 C -0.003 4.003 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -18.966 -0.007 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.113 0.887 9 O -0.118 6.118 10 C 0.243 3.757 11 O -0.462 6.462 12 C -0.134 4.134 13 C -0.185 4.185 14 C 0.273 3.727 15 O -0.308 6.308 16 C -0.161 4.161 17 C -0.039 4.039 18 C -0.145 4.145 19 C -0.050 4.050 20 C -0.140 4.140 21 N 0.549 4.451 22 O -0.371 6.371 23 O -0.375 6.375 24 C -0.022 4.022 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 8.442 -18.163 -0.007 20.029 hybrid contribution 0.320 0.361 -0.002 0.483 sum 8.762 -17.802 -0.009 19.842 Atomic orbital electron populations 1.69988 1.06031 1.27908 1.46057 1.25364 0.95821 0.98948 0.96109 0.85731 0.78626 0.79404 0.79317 1.19476 1.20345 1.19471 1.21173 0.92322 0.79848 1.52789 0.88681 1.83876 1.39389 1.13423 1.75107 1.23035 0.86581 0.87297 0.78769 1.90535 1.15671 1.88254 1.51727 1.20836 0.97775 0.88956 1.05841 1.21785 0.99809 0.90561 1.06324 1.22530 0.88777 0.89764 0.71663 1.90591 1.15964 1.89434 1.34765 1.20674 0.94850 0.94324 1.06248 1.22139 0.92588 1.00650 0.88533 1.21274 1.01675 0.90396 1.01115 1.21345 0.91416 1.00839 0.91436 1.21037 0.93511 0.83101 1.16378 1.43574 1.01202 1.02795 0.97569 1.94585 0.95631 1.93780 1.53119 1.94536 1.65048 1.24533 1.53373 1.21324 1.02649 0.89228 0.89006 0.91927 0.88385 0.88390 0.87085 0.87093 0.82296 0.82611 0.82483 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -11.14 9.65 30.92 0.30 -10.84 16 8 H 0.10 2.73 6.86 -52.48 -0.36 2.37 16 9 O -0.21 -5.91 9.75 -20.69 -0.20 -6.12 16 10 C 0.40 9.13 7.91 36.00 0.28 9.41 16 11 O -0.56 -13.71 15.22 -19.05 -0.29 -14.00 16 12 C -0.10 -1.61 5.10 -27.89 -0.14 -1.75 16 13 C -0.15 -1.80 3.60 -27.88 -0.10 -1.90 16 14 C 0.40 4.51 7.12 -30.69 -0.22 4.29 16 15 O -0.43 -6.27 15.98 5.58 0.09 -6.18 16 16 C -0.16 -1.43 5.87 -105.06 -0.62 -2.04 16 17 C -0.02 -0.13 9.47 -39.10 -0.37 -0.50 16 18 C -0.13 -0.61 10.03 -39.65 -0.40 -1.01 16 19 C -0.03 -0.20 9.55 -39.46 -0.38 -0.58 16 20 C -0.06 -0.54 6.84 -80.02 -0.55 -1.09 16 21 N 0.03 0.33 4.45 33.93 0.15 0.48 16 22 O -0.15 -2.01 18.44 -29.46 -0.54 -2.55 16 23 O -0.16 -1.88 18.44 -29.46 -0.54 -2.42 16 24 C 0.00 -0.03 9.10 -39.10 -0.36 -0.38 16 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 27 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 28 H 0.11 1.23 8.05 -51.93 -0.42 0.81 16 29 H 0.11 1.23 8.04 -51.93 -0.42 0.81 16 30 H 0.16 0.70 7.05 -52.49 -0.37 0.33 16 31 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 32 H 0.16 0.74 7.60 -52.49 -0.40 0.34 16 33 H 0.16 1.70 7.19 -52.49 -0.38 1.33 16 LS Contribution 313.89 15.07 4.73 4.73 Total: -1.00 -34.87 313.89 -6.25 -41.12 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.74 Total: -1.24 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.64 Total: -5.32 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.91 Total: -23.86 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.49 Total: -31.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.87 -6.25 -41.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837781095.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.215 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds