Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99728 * 2 1 4 4 H 1.48495 * 109.46942 * 239.99820 * 3 2 1 5 5 H 1.48496 * 109.47345 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46586 * 120.00217 * 3 2 1 7 7 C 1.37873 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47100 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47362 * 179.97438 * 10 9 7 12 12 C 1.34947 * 117.00278 * 179.97438 * 11 10 9 13 13 O 1.21674 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.41729 * 120.00068 * 180.02562 * 12 11 10 15 15 S 1.75818 * 125.48047 * 354.20249 * 14 12 11 16 16 C 1.70571 * 91.67427 * 180.02562 * 15 14 12 17 17 C 1.33625 * 111.17417 * 359.72651 * 16 15 14 18 18 C 1.37435 * 125.48222 * 174.22855 * 14 12 11 19 19 N 1.39932 * 123.49225 * 359.97438 * 18 14 12 20 20 C 1.36290 * 126.86506 * 127.92463 * 19 18 14 21 21 C 1.34982 * 106.77597 * 179.73969 * 20 19 18 22 22 N 1.33354 * 109.01513 * 0.26844 * 21 20 19 23 23 N 1.28765 * 109.92540 * 359.97438 * 22 21 20 24 24 H 0.96993 * 119.99929 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47078 * 59.99963 * 9 7 2 26 26 H 1.09002 * 109.46822 * 300.00041 * 9 7 2 27 27 H 1.09000 * 109.47288 * 59.99966 * 10 9 7 28 28 H 1.09002 * 109.47215 * 299.99676 * 10 9 7 29 29 H 1.07992 * 124.41134 * 179.97438 * 16 15 14 30 30 H 1.07996 * 122.45062 * 180.25370 * 17 16 15 31 31 H 1.08006 * 126.61212 * 0.02562 * 20 19 18 32 32 H 1.08005 * 125.49069 * 180.22568 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 8 1.5310 -4.8996 -0.0020 12 6 2.2659 -6.0313 -0.0024 13 8 3.4810 -5.9676 -0.0018 14 6 1.6226 -7.2942 -0.0034 15 16 -0.1099 -7.5569 0.1403 16 6 0.0880 -9.2484 0.0442 17 6 1.3761 -9.5765 -0.0928 18 6 2.2526 -8.5104 -0.1164 19 7 3.6384 -8.6529 -0.2478 20 6 4.4544 -9.4417 0.5067 21 6 5.7064 -9.2752 0.0305 22 7 5.6744 -8.4081 -0.9821 23 7 4.4661 -8.0098 -1.1808 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 2.8713 -3.6047 0.8890 28 1 2.8727 -3.6039 -0.8910 29 1 -0.7224 -9.9610 0.0846 30 1 1.7075 -10.6011 -0.1751 31 1 4.1561 -10.0808 1.3247 32 1 6.5916 -9.7648 0.4091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838417773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = 56.842107 kcal Electronic energy + Delta-G solvation = -20123.192417 eV Core-core repulsion = 16792.736175 eV Total energy + Delta-G solvation = -3330.456242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17665 -40.20865 -38.51097 -36.15438 -33.49502 -33.34880 -31.13127 -30.56639 -29.68783 -26.30580 -24.88681 -23.03139 -22.45483 -21.79174 -20.85711 -19.89499 -18.88921 -17.45098 -16.74610 -16.19834 -15.99449 -15.64880 -15.28352 -14.94596 -14.82577 -14.46448 -14.26209 -13.81937 -13.14096 -12.96478 -12.83373 -12.33414 -11.81819 -11.42893 -11.28336 -11.23677 -11.06911 -10.76640 -10.73361 -10.71655 -10.39431 -9.65249 -9.65052 -9.42072 -9.32391 -9.25283 -8.79448 -8.43661 -6.10221 -4.14347 -0.19197 0.89180 1.13019 1.43233 1.84864 2.21853 2.56453 2.92699 3.09911 3.31414 3.34928 3.39402 4.30841 4.39937 4.45004 4.59126 4.81329 4.95098 5.06849 5.25256 5.26500 5.33041 5.39714 5.69323 6.05527 6.06809 6.09845 6.56245 6.62993 6.87844 7.53293 7.60736 7.85156 8.08670 8.15010 8.24415 8.90664 9.50071 11.01301 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.003827 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.853904 B = 7315.455027 C = 8586.114584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.520 3.480 13 O -0.480 6.480 14 C -0.247 4.247 15 S 0.340 5.660 16 C -0.232 4.232 17 C -0.149 4.149 18 C 0.189 3.811 19 N -0.311 5.311 20 C 0.023 3.977 21 C -0.075 4.075 22 N -0.239 5.239 23 N -0.014 5.014 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.183 0.817 30 H 0.155 0.845 31 H 0.192 0.808 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -24.266 2.904 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.010 4.010 10 C 0.002 3.998 11 O -0.265 6.265 12 C 0.363 3.637 13 O -0.369 6.369 14 C -0.369 4.369 15 S 0.609 5.391 16 C -0.371 4.371 17 C -0.181 4.181 18 C 0.081 3.919 19 N -0.094 5.094 20 C -0.127 4.127 21 C -0.230 4.230 22 N -0.110 5.110 23 N 0.007 4.993 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.201 0.799 30 H 0.172 0.828 31 H 0.209 0.791 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.647 -22.130 1.891 22.272 hybrid contribution 1.676 -0.797 0.802 2.021 sum 0.029 -22.927 2.693 23.084 Atomic orbital electron populations 1.69959 1.06080 1.27101 1.49791 1.24967 0.94916 0.99351 0.94813 0.86529 0.79495 0.82432 0.78843 1.20013 1.21102 1.20069 1.20946 0.93193 0.90089 1.52244 0.92283 1.19171 0.94072 0.88922 0.98844 1.23303 0.96689 0.78700 1.01090 1.86184 1.41766 1.15421 1.83174 1.18243 0.85868 0.84340 0.75222 1.90960 1.13917 1.87789 1.44282 1.22985 1.00352 0.95186 1.18340 1.83777 0.98353 0.95789 1.61198 1.25391 1.01028 1.03556 1.07147 1.19599 0.91628 0.99700 1.07162 1.16570 0.80515 0.91893 1.02923 1.47333 1.05064 1.31762 1.25284 1.23516 0.91103 0.98649 0.99411 1.23176 0.97756 1.03465 0.98568 1.74345 1.12710 1.09161 1.14784 1.82375 0.93717 1.14010 1.09176 0.92660 0.95285 0.95366 0.92485 0.92232 0.79918 0.82782 0.79078 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 9 C 0.03 0.71 5.34 -27.88 -0.15 0.57 16 10 C 0.08 1.73 5.32 37.16 0.20 1.93 16 11 O -0.35 -7.18 9.88 -41.17 -0.41 -7.59 16 12 C 0.52 9.94 7.72 32.06 0.25 10.19 16 13 O -0.48 -10.48 13.91 -19.40 -0.27 -10.75 16 14 C -0.25 -3.60 6.29 -38.54 -0.24 -3.84 16 15 S 0.34 3.35 22.83 -107.50 -2.45 0.90 16 16 C -0.23 -1.56 10.90 29.12 0.32 -1.25 16 17 C -0.15 -1.24 10.03 -41.27 -0.41 -1.65 16 18 C 0.19 2.41 6.29 -84.52 -0.53 1.88 16 19 N -0.31 -4.44 3.15 -11.11 -0.03 -4.47 16 20 C 0.02 0.24 11.50 -16.73 -0.19 0.05 16 21 C -0.08 -0.88 11.86 -18.05 -0.21 -1.09 16 22 N -0.24 -3.93 12.33 30.09 0.37 -3.56 16 23 N -0.01 -0.26 11.73 60.35 0.71 0.45 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 29 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.19 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.19 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -35.83 308.59 -6.04 -41.87 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -2.92 Total: -5.56 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.39 Total: -6.89 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 1.78 Total: -33.27 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.68 Total: -18.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.45 Total: 0.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.83 -6.04 -41.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838417773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.709 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds