Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99728 * 2 1 4 4 H 1.48495 * 109.46942 * 239.99820 * 3 2 1 5 5 H 1.48496 * 109.47345 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46586 * 120.00217 * 3 2 1 7 7 C 1.37873 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00427 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47100 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47362 * 179.97438 * 10 9 7 12 12 C 1.34947 * 117.00278 * 179.97438 * 11 10 9 13 13 O 1.21674 * 120.00016 * 0.02562 * 12 11 10 14 14 C 1.41729 * 120.00068 * 180.02562 * 12 11 10 15 15 S 1.75818 * 125.48047 * 354.20249 * 14 12 11 16 16 C 1.70571 * 91.67427 * 180.02562 * 15 14 12 17 17 C 1.33625 * 111.17417 * 359.72651 * 16 15 14 18 18 C 1.37435 * 125.48222 * 174.22855 * 14 12 11 19 19 N 1.39932 * 123.49225 * 359.97438 * 18 14 12 20 20 C 1.36290 * 126.86506 * 127.92463 * 19 18 14 21 21 C 1.34982 * 106.77597 * 179.73969 * 20 19 18 22 22 N 1.33354 * 109.01513 * 0.26844 * 21 20 19 23 23 N 1.28765 * 109.92540 * 359.97438 * 22 21 20 24 24 H 0.96993 * 119.99929 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47078 * 59.99963 * 9 7 2 26 26 H 1.09002 * 109.46822 * 300.00041 * 9 7 2 27 27 H 1.09000 * 109.47288 * 59.99966 * 10 9 7 28 28 H 1.09002 * 109.47215 * 299.99676 * 10 9 7 29 29 H 1.07992 * 124.41134 * 179.97438 * 16 15 14 30 30 H 1.07996 * 122.45062 * 180.25370 * 17 16 15 31 31 H 1.08006 * 126.61212 * 0.02562 * 20 19 18 32 32 H 1.08005 * 125.49069 * 180.22568 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 8 1.5310 -4.8996 -0.0020 12 6 2.2659 -6.0313 -0.0024 13 8 3.4810 -5.9676 -0.0018 14 6 1.6226 -7.2942 -0.0034 15 16 -0.1099 -7.5569 0.1403 16 6 0.0880 -9.2484 0.0442 17 6 1.3761 -9.5765 -0.0928 18 6 2.2526 -8.5104 -0.1164 19 7 3.6384 -8.6529 -0.2478 20 6 4.4544 -9.4417 0.5067 21 6 5.7064 -9.2752 0.0305 22 7 5.6744 -8.4081 -0.9821 23 7 4.4661 -8.0098 -1.1808 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 2.8713 -3.6047 0.8890 28 1 2.8727 -3.6039 -0.8910 29 1 -0.7224 -9.9610 0.0846 30 1 1.7075 -10.6011 -0.1751 31 1 4.1561 -10.0808 1.3247 32 1 6.5916 -9.7648 0.4091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838417773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = 32.526774 kcal Electronic energy + Delta-G solvation = -20124.246809 eV Core-core repulsion = 16792.736175 eV Total energy + Delta-G solvation = -3331.510634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.15133 -41.66962 -39.48346 -37.73097 -35.49386 -34.42025 -32.64948 -31.81560 -30.95028 -27.60209 -26.58625 -23.96334 -23.79619 -22.86128 -22.63067 -20.79726 -20.18444 -18.72118 -18.39302 -17.80155 -17.55709 -16.78467 -16.52189 -16.25168 -15.79518 -15.64073 -15.33926 -14.95778 -14.58215 -14.40745 -14.20331 -13.75868 -13.22181 -13.12954 -12.76304 -12.63148 -12.62752 -12.25036 -12.15628 -11.97554 -11.73426 -11.61471 -11.53994 -11.46765 -10.63905 -10.33216 -10.13654 -9.62849 -8.29976 -6.43336 -1.14115 0.04286 0.28788 0.72190 1.00326 1.32360 1.38388 1.42340 1.49690 1.59369 1.64778 1.71428 2.38013 3.04122 3.55443 3.61240 3.75869 3.99860 4.08936 4.12017 4.16826 4.18740 4.44943 4.60097 4.61172 4.82383 4.85352 5.16014 5.20912 5.40768 5.42700 5.68578 5.71688 6.02999 6.54144 6.68683 7.15111 7.26188 8.82445 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.003827 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.853904 B = 7315.455027 C = 8586.114584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.094 3.906 11 O -0.355 6.355 12 C 0.520 3.480 13 O -0.520 6.520 14 C -0.314 4.314 15 S 0.354 5.646 16 C -0.182 4.182 17 C -0.152 4.152 18 C 0.196 3.804 19 N -0.319 5.319 20 C 0.044 3.956 21 C -0.084 4.084 22 N -0.276 5.276 23 N -0.086 5.086 24 H 0.269 0.731 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.235 0.765 30 H 0.192 0.808 31 H 0.247 0.753 32 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -26.940 4.037 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.593 4.593 8 H 0.078 0.922 9 C -0.001 4.001 10 C 0.021 3.979 11 O -0.272 6.272 12 C 0.366 3.634 13 O -0.411 6.411 14 C -0.435 4.435 15 S 0.623 5.377 16 C -0.320 4.320 17 C -0.182 4.182 18 C 0.085 3.915 19 N -0.103 5.103 20 C -0.106 4.106 21 C -0.240 4.240 22 N -0.145 5.145 23 N -0.063 5.063 24 H 0.078 0.922 25 H 0.027 0.973 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.251 0.749 30 H 0.209 0.791 31 H 0.263 0.737 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.476 -24.806 3.001 25.109 hybrid contribution 1.830 -0.203 0.520 1.913 sum -0.646 -25.009 3.522 25.264 Atomic orbital electron populations 1.70069 1.07662 1.28441 1.50048 1.25915 0.95875 1.03212 0.93880 0.85399 0.78275 0.77548 0.79228 1.19318 1.19987 1.19121 1.21314 0.93540 0.91378 1.53045 0.92195 1.18962 0.94079 0.90136 0.96928 1.22746 0.95422 0.79404 1.00371 1.86155 1.41778 1.15349 1.83896 1.18917 0.85706 0.84956 0.73821 1.90931 1.15453 1.88205 1.46559 1.22835 1.03216 0.93423 1.24008 1.83747 0.94951 0.98539 1.60503 1.26000 1.01758 1.02183 1.02109 1.19886 0.91149 0.99991 1.07159 1.17221 0.80418 0.92563 1.01273 1.47588 1.05866 1.31584 1.25229 1.24483 0.90080 0.97069 0.98968 1.23975 0.99902 1.02613 0.97487 1.74282 1.12820 1.10548 1.16893 1.82337 0.94721 1.16973 1.12297 0.92172 0.97298 0.97012 0.92852 0.93257 0.74885 0.79115 0.73675 0.75865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.29 21.45 0.28 -55.44 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.56 -32.69 9.11 25.60 0.23 -32.46 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.04 2.01 5.34 29.85 0.16 2.17 16 10 C 0.09 4.63 5.32 71.98 0.38 5.01 16 11 O -0.35 -15.53 9.88 -58.63 -0.58 -16.11 16 12 C 0.52 20.98 7.72 68.68 0.53 21.52 16 13 O -0.52 -24.22 13.91 19.27 0.27 -23.95 16 14 C -0.31 -9.18 6.29 22.94 0.14 -9.03 16 15 S 0.35 6.31 22.83 -56.49 -1.29 5.02 16 16 C -0.18 -1.51 10.90 66.77 0.73 -0.78 16 17 C -0.15 -1.85 10.03 21.18 0.21 -1.64 16 18 C 0.20 4.68 6.29 37.61 0.24 4.92 16 19 N -0.32 -8.87 3.15 -189.07 -0.59 -9.46 16 20 C 0.04 0.81 11.50 83.25 0.96 1.77 16 21 C -0.08 -1.84 11.86 83.71 0.99 -0.85 16 22 N -0.28 -9.36 12.33 -58.72 -0.72 -10.08 16 23 N -0.09 -3.23 11.73 37.02 0.43 -2.79 16 24 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 2.61 8.13 -2.39 -0.02 2.59 16 28 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 29 H 0.23 -0.34 8.06 -2.91 -0.02 -0.36 16 30 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.25 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -85.55 308.59 6.02 -79.53 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: 1.16 Total: -5.13 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.04 Total: -8.29 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -0.60 Total: -77.77 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.31 Total: -40.06 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.29 Total: 5.02 kcal Total: -85.55 6.02 -79.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838417773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.056 kcal (2) G-P(sol) polarization free energy of solvation -85.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds