Wall clock time and date at job start Tue Mar 31 2020 06:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47574 * 2 1 4 4 C 1.50700 * 109.46740 * 239.99825 * 2 1 3 5 5 H 1.07996 * 120.00489 * 239.99982 * 4 2 1 6 6 C 1.37882 * 119.99867 * 60.00502 * 4 2 1 7 7 N 1.31513 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47513 * 59.99583 * 8 6 4 10 10 H 1.48501 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46906 * 299.99492 * 8 6 4 12 12 O 1.42902 * 109.47028 * 120.00692 * 2 1 3 13 13 C 1.34949 * 116.99315 * 269.99576 * 12 2 1 14 14 O 1.21676 * 120.00632 * 359.97438 * 13 12 2 15 15 C 1.41729 * 119.99566 * 180.02562 * 13 12 2 16 16 S 1.75814 * 125.48439 * 5.52967 * 15 13 12 17 17 C 1.70567 * 91.67584 * 180.02562 * 16 15 13 18 18 C 1.33624 * 111.17688 * 0.02562 * 17 16 15 19 19 C 1.37447 * 125.47685 * 185.80668 * 15 13 12 20 20 N 1.39919 * 123.49393 * 359.97438 * 19 15 13 21 21 C 1.36295 * 126.86726 * 231.76721 * 20 19 15 22 22 C 1.34977 * 106.78258 * 180.02562 * 21 20 19 23 23 N 1.33369 * 109.01428 * 359.97438 * 22 21 20 24 24 N 1.28767 * 109.92274 * 359.71335 * 23 22 21 25 25 H 1.08997 * 109.47574 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46821 * 300.00180 * 1 2 3 27 27 H 1.09004 * 109.46931 * 59.99506 * 1 2 3 28 28 H 0.97012 * 119.99702 * 179.97438 * 7 6 4 29 29 H 1.08002 * 124.41096 * 179.97438 * 17 16 15 30 30 H 1.07997 * 122.45147 * 179.97438 * 18 17 16 31 31 H 1.07999 * 126.60588 * 359.97438 * 21 20 19 32 32 H 1.07995 * 125.49776 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0083 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 8 2.0063 -0.6738 1.1667 13 6 2.2106 0.0787 2.2681 14 8 1.9902 1.2750 2.2372 15 6 2.6829 -0.5242 3.4606 16 16 3.1781 -2.2028 3.6287 17 6 3.5468 -1.9810 5.2792 18 6 3.3074 -0.7235 5.6626 19 6 2.8223 0.1079 4.6731 20 7 2.5081 1.4553 4.8821 21 6 3.3087 2.4039 5.4449 22 6 2.6054 3.5559 5.4474 23 7 1.4074 3.3348 4.9046 24 7 1.3079 2.1014 4.5484 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7087 1.1614 -3.4844 29 1 3.9238 -2.7562 5.9299 30 1 3.4777 -0.3834 6.6733 31 1 4.3122 2.2611 5.8178 32 1 2.9561 4.5040 5.8276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838801807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:17 Heat of formation + Delta-G solvation = 62.774905 kcal Electronic energy + Delta-G solvation = -20767.558126 eV Core-core repulsion = 17437.359149 eV Total energy + Delta-G solvation = -3330.198976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99042 -39.82152 -38.27078 -35.75823 -33.32973 -33.24074 -30.86486 -30.20061 -29.13267 -25.93886 -25.29782 -22.86176 -22.77881 -21.64283 -20.45805 -19.70380 -18.44696 -17.31136 -16.42287 -16.22269 -15.50898 -15.27692 -15.01569 -14.84261 -14.65088 -14.28396 -14.05848 -13.31820 -13.03487 -12.85314 -12.14176 -11.92530 -11.62314 -11.28684 -11.22849 -11.06903 -11.06163 -10.84604 -10.56489 -10.40661 -10.27790 -9.89080 -9.52943 -9.24308 -9.06564 -8.89274 -8.61173 -8.47810 -6.17112 -4.25100 0.03073 1.08134 1.30722 1.61297 2.04981 2.40876 2.73594 3.25918 3.29083 3.31433 3.32950 3.57926 4.32708 4.47858 4.63725 4.77753 4.96989 5.12614 5.15523 5.25275 5.46804 5.54929 5.61792 5.98573 6.22671 6.65392 6.75153 6.91894 6.95191 7.13091 7.58497 7.73615 7.91157 8.13445 8.32798 8.55483 8.85116 9.40200 10.90165 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.004968 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.017367 B = 5634.518809 C = 6740.524184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.045 0.955 4 C -0.523 4.523 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.275 1.275 12 O -0.346 6.346 13 C 0.514 3.486 14 O -0.481 6.481 15 C -0.234 4.234 16 S 0.331 5.669 17 C -0.239 4.239 18 C -0.147 4.147 19 C 0.181 3.819 20 N -0.308 5.308 21 C 0.021 3.979 22 C -0.077 4.077 23 N -0.241 5.241 24 N -0.010 5.010 25 H 0.036 0.964 26 H 0.018 0.982 27 H 0.099 0.901 28 H 0.267 0.733 29 H 0.181 0.819 30 H 0.153 0.847 31 H 0.191 0.809 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -4.835 18.119 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.263 6.263 13 C 0.356 3.644 14 O -0.371 6.371 15 C -0.356 4.356 16 S 0.599 5.401 17 C -0.378 4.378 18 C -0.179 4.179 19 C 0.073 3.927 20 N -0.092 5.092 21 C -0.129 4.129 22 C -0.231 4.231 23 N -0.112 5.112 24 N 0.011 4.989 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.199 0.801 30 H 0.170 0.830 31 H 0.208 0.792 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.484 -5.758 16.307 18.469 hybrid contribution 1.288 1.024 0.615 1.757 sum 7.772 -4.734 16.922 19.214 Atomic orbital electron populations 1.22182 0.97502 1.00068 1.01605 1.20267 0.91580 0.94159 0.77751 0.93693 1.20961 1.32759 1.13520 0.88810 0.91389 1.24894 0.94895 0.95075 0.99050 1.69904 1.35781 1.22437 1.24293 0.86332 0.79166 0.79545 0.81068 1.19897 1.21004 1.20014 1.86162 1.76260 1.42916 1.20932 1.18234 0.76573 0.85675 0.83887 1.90933 1.46944 1.15174 1.84032 1.23168 1.15015 1.01036 0.96339 1.83662 1.53318 1.02843 1.00264 1.25331 1.07859 1.01145 1.03421 1.19568 1.05503 0.92643 1.00212 1.16574 1.02205 0.82078 0.91876 1.47308 1.13281 1.06268 1.42308 1.23484 0.99015 0.89088 1.01324 1.23146 0.91777 0.99683 1.08481 1.74349 1.18578 1.08533 1.09740 1.82388 1.00387 0.99454 1.16627 0.94485 0.96311 0.88273 0.92308 0.80147 0.82976 0.79209 0.79688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.31 37.16 0.35 -3.78 16 2 C 0.22 5.93 2.51 -27.88 -0.07 5.86 16 3 H 0.05 1.38 7.11 -51.93 -0.37 1.01 16 4 C -0.52 -14.78 8.89 -34.44 -0.31 -15.08 16 5 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 O -0.35 -8.41 9.51 -41.17 -0.39 -8.80 16 13 C 0.51 11.50 7.69 32.06 0.25 11.75 16 14 O -0.48 -12.22 13.34 -19.40 -0.26 -12.48 16 15 C -0.23 -3.97 6.29 -38.54 -0.24 -4.21 16 16 S 0.33 3.85 22.83 -107.50 -2.45 1.39 16 17 C -0.24 -1.98 10.90 29.12 0.32 -1.66 16 18 C -0.15 -1.47 10.02 -41.27 -0.41 -1.88 16 19 C 0.18 2.67 6.29 -84.53 -0.53 2.14 16 20 N -0.31 -5.02 3.16 -11.11 -0.04 -5.06 16 21 C 0.02 0.26 11.50 -16.73 -0.19 0.06 16 22 C -0.08 -1.02 11.86 -18.04 -0.21 -1.24 16 23 N -0.24 -4.41 12.33 30.09 0.37 -4.04 16 24 N -0.01 -0.20 11.69 60.35 0.71 0.51 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.10 2.79 6.07 -51.93 -0.32 2.47 16 28 H 0.27 7.29 8.31 -40.81 -0.34 6.95 16 29 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.19 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -35.49 303.40 -5.81 -41.30 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -2.77 Total: -2.10 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.16 Total: -6.37 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 1.67 Total: -33.64 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.65 Total: -21.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.45 Total: 1.39 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.49 -5.81 -41.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838801807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.073 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds