Wall clock time and date at job start Tue Mar 31 2020 06:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47574 * 2 1 4 4 C 1.50700 * 109.46740 * 239.99825 * 2 1 3 5 5 H 1.07996 * 120.00489 * 239.99982 * 4 2 1 6 6 C 1.37882 * 119.99867 * 60.00502 * 4 2 1 7 7 N 1.31513 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47513 * 59.99583 * 8 6 4 10 10 H 1.48501 * 109.46869 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46906 * 299.99492 * 8 6 4 12 12 O 1.42902 * 109.47028 * 120.00692 * 2 1 3 13 13 C 1.34949 * 116.99315 * 269.99576 * 12 2 1 14 14 O 1.21676 * 120.00632 * 359.97438 * 13 12 2 15 15 C 1.41729 * 119.99566 * 180.02562 * 13 12 2 16 16 S 1.75814 * 125.48439 * 5.52967 * 15 13 12 17 17 C 1.70567 * 91.67584 * 180.02562 * 16 15 13 18 18 C 1.33624 * 111.17688 * 0.02562 * 17 16 15 19 19 C 1.37447 * 125.47685 * 185.80668 * 15 13 12 20 20 N 1.39919 * 123.49393 * 359.97438 * 19 15 13 21 21 C 1.36295 * 126.86726 * 231.76721 * 20 19 15 22 22 C 1.34977 * 106.78258 * 180.02562 * 21 20 19 23 23 N 1.33369 * 109.01428 * 359.97438 * 22 21 20 24 24 N 1.28767 * 109.92274 * 359.71335 * 23 22 21 25 25 H 1.08997 * 109.47574 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46821 * 300.00180 * 1 2 3 27 27 H 1.09004 * 109.46931 * 59.99506 * 1 2 3 28 28 H 0.97012 * 119.99702 * 179.97438 * 7 6 4 29 29 H 1.08002 * 124.41096 * 179.97438 * 17 16 15 30 30 H 1.07997 * 122.45147 * 179.97438 * 18 17 16 31 31 H 1.07999 * 126.60588 * 359.97438 * 21 20 19 32 32 H 1.07995 * 125.49776 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0083 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 8 2.0063 -0.6738 1.1667 13 6 2.2106 0.0787 2.2681 14 8 1.9902 1.2750 2.2372 15 6 2.6829 -0.5242 3.4606 16 16 3.1781 -2.2028 3.6287 17 6 3.5468 -1.9810 5.2792 18 6 3.3074 -0.7235 5.6626 19 6 2.8223 0.1079 4.6731 20 7 2.5081 1.4553 4.8821 21 6 3.3087 2.4039 5.4449 22 6 2.6054 3.5559 5.4474 23 7 1.4074 3.3348 4.9046 24 7 1.3079 2.1014 4.5484 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7087 1.1614 -3.4844 29 1 3.9238 -2.7562 5.9299 30 1 3.4777 -0.3834 6.6733 31 1 4.3122 2.2611 5.8178 32 1 2.9561 4.5040 5.8276 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838801807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:16 Heat of formation + Delta-G solvation = 38.093276 kcal Electronic energy + Delta-G solvation = -20768.628401 eV Core-core repulsion = 17437.359149 eV Total energy + Delta-G solvation = -3331.269252 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.12470 -41.49584 -39.42608 -37.58721 -35.37231 -34.39387 -32.24252 -31.66693 -30.68818 -27.53798 -27.06564 -24.38456 -23.84890 -22.79092 -22.24403 -20.77321 -20.01435 -18.85686 -18.19004 -17.66751 -17.03666 -16.89604 -16.42678 -16.11910 -15.71051 -15.58431 -14.99310 -14.83140 -14.54992 -14.27690 -13.86742 -13.63210 -13.26418 -13.08673 -12.84551 -12.72241 -12.44572 -12.23563 -12.19441 -12.10379 -11.71078 -11.65599 -11.59778 -11.03452 -10.63156 -10.30977 -10.08900 -9.59041 -8.30759 -6.49574 -1.07767 0.08281 0.31764 0.76432 1.07005 1.36611 1.39939 1.45011 1.53198 1.63789 1.77636 1.96792 2.40513 2.99678 3.60421 3.65240 3.85384 4.06805 4.13716 4.18722 4.44837 4.47335 4.62695 4.71266 4.75722 4.84899 4.90149 5.07955 5.21985 5.42800 5.54404 5.74470 5.84490 5.99859 6.54680 6.83470 7.16881 7.22358 8.77270 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018850 B = 0.004968 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.017367 B = 5634.518809 C = 6740.524184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.222 3.778 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.988 3.012 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.266 1.266 12 O -0.351 6.351 13 C 0.511 3.489 14 O -0.528 6.528 15 C -0.311 4.311 16 S 0.355 5.645 17 C -0.184 4.184 18 C -0.151 4.151 19 C 0.189 3.811 20 N -0.317 5.317 21 C 0.042 3.958 22 C -0.085 4.085 23 N -0.279 5.279 24 N -0.085 5.085 25 H 0.048 0.952 26 H 0.012 0.988 27 H 0.080 0.920 28 H 0.271 0.729 29 H 0.237 0.763 30 H 0.192 0.808 31 H 0.248 0.752 32 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.727 -7.331 20.333 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.810 3.190 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.191 1.191 12 O -0.268 6.268 13 C 0.357 3.643 14 O -0.421 6.421 15 C -0.432 4.432 16 S 0.624 5.376 17 C -0.323 4.323 18 C -0.181 4.181 19 C 0.079 3.921 20 N -0.101 5.101 21 C -0.108 4.108 22 C -0.241 4.241 23 N -0.148 5.148 24 N -0.062 5.062 25 H 0.067 0.933 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.253 0.747 30 H 0.209 0.791 31 H 0.264 0.736 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 9.211 -8.281 18.534 22.292 hybrid contribution 0.561 1.796 0.140 1.887 sum 9.773 -6.485 18.675 22.052 Atomic orbital electron populations 1.21998 0.97259 1.00290 1.00353 1.19895 0.91787 0.92050 0.79491 0.98432 1.21258 1.33650 1.14031 0.89554 0.90887 1.25942 0.94595 0.95620 1.02429 1.70051 1.36548 1.23817 1.25327 0.85160 0.78835 0.78665 0.76304 1.18407 1.20362 1.19067 1.86127 1.76813 1.42834 1.21010 1.19037 0.75404 0.85391 0.84469 1.90900 1.49385 1.17073 1.84703 1.22958 1.20519 1.04688 0.94997 1.83534 1.52263 0.98938 1.02912 1.26000 1.03205 1.01477 1.01610 1.19863 1.05332 0.92270 1.00661 1.17290 1.00660 0.81887 0.92285 1.47584 1.13171 1.07442 1.41894 1.24484 1.00226 0.87584 0.98549 1.23980 0.90464 1.01923 1.07709 1.74281 1.21314 1.08549 1.10659 1.82350 1.03229 1.00511 1.20140 0.93289 0.96852 0.90103 0.91994 0.74683 0.79066 0.73616 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.95 9.31 71.98 0.67 -7.28 16 2 C 0.22 13.01 2.51 29.85 0.07 13.09 16 3 H 0.00 -0.14 7.11 -2.39 -0.02 -0.16 16 4 C -0.55 -32.00 8.89 25.60 0.23 -31.77 16 5 H 0.07 4.08 7.81 -2.91 -0.02 4.05 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -55.13 11.32 21.45 0.24 -54.89 16 8 Si 0.99 43.49 29.54 68.60 2.03 45.52 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 12 O -0.35 -18.09 9.51 -58.65 -0.56 -18.65 16 13 C 0.51 24.39 7.69 68.68 0.53 24.92 16 14 O -0.53 -29.18 13.34 19.26 0.26 -28.92 16 15 C -0.31 -10.67 6.29 22.95 0.14 -10.52 16 16 S 0.35 7.43 22.83 -56.49 -1.29 6.14 16 17 C -0.18 -2.00 10.90 66.77 0.73 -1.28 16 18 C -0.15 -2.31 10.02 21.18 0.21 -2.09 16 19 C 0.19 5.33 6.29 37.62 0.24 5.57 16 20 N -0.32 -10.26 3.16 -189.07 -0.60 -10.86 16 21 C 0.04 0.94 11.50 83.25 0.96 1.90 16 22 C -0.09 -2.20 11.86 83.71 0.99 -1.21 16 23 N -0.28 -10.68 12.33 -58.72 -0.72 -11.41 16 24 N -0.09 -3.61 11.69 37.02 0.43 -3.18 16 25 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 4.83 6.07 -2.38 -0.01 4.81 16 28 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 29 H 0.24 0.09 8.06 -2.91 -0.02 0.07 16 30 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 31 H 0.25 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.23 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -88.11 303.40 6.17 -81.93 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.16 Total: 1.76 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.22 Total: -7.46 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -0.65 Total: -80.33 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.30 Total: -47.57 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 7.43 SS G_CDS: -1.29 Total: 6.14 kcal Total: -88.11 6.17 -81.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838801807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.026 kcal (2) G-P(sol) polarization free energy of solvation -88.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds