Wall clock time and date at job start Tue Mar 31 2020 06:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46624 * 2 1 4 4 C 1.50698 * 109.47164 * 119.99928 * 2 1 3 5 5 H 1.07997 * 119.99719 * 120.00955 * 4 2 1 6 6 C 1.37871 * 120.00127 * 299.99841 * 4 2 1 7 7 N 1.31508 * 120.00275 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00201 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47376 * 89.99198 * 8 6 4 10 10 H 1.48503 * 109.47238 * 209.99830 * 8 6 4 11 11 H 1.48502 * 109.47178 * 329.99639 * 8 6 4 12 12 O 1.42898 * 109.47133 * 240.00461 * 2 1 3 13 13 C 1.34947 * 117.00261 * 89.99423 * 12 2 1 14 14 O 1.21674 * 120.00024 * 0.02562 * 13 12 2 15 15 C 1.41724 * 119.99766 * 179.97438 * 13 12 2 16 16 S 1.75815 * 125.48467 * 353.28417 * 15 13 12 17 17 C 1.70566 * 91.67334 * 179.97438 * 16 15 13 18 18 C 1.33619 * 111.18454 * 0.02562 * 17 16 15 19 19 C 1.37445 * 125.47863 * 173.56163 * 15 13 12 20 20 N 1.39927 * 123.48979 * 0.02562 * 19 15 13 21 21 C 1.36298 * 126.86102 * 186.52066 * 20 19 15 22 22 C 1.34987 * 106.77380 * 179.97438 * 21 20 19 23 23 N 1.33360 * 109.01335 * 0.02562 * 22 21 20 24 24 N 1.28760 * 109.92710 * 359.74934 * 23 22 21 25 25 H 1.08997 * 109.47035 * 299.99500 * 1 2 3 26 26 H 1.08996 * 109.47674 * 60.00317 * 1 2 3 27 27 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00667 * 180.02562 * 7 6 4 29 29 H 1.08005 * 124.41054 * 179.97438 * 17 16 15 30 30 H 1.07991 * 122.45953 * 179.97438 * 18 17 16 31 31 H 1.07998 * 126.61438 * 0.02562 * 21 20 19 32 32 H 1.08002 * 125.48771 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9069 11 1 0.8471 2.1766 1.4921 12 8 2.0064 -0.6735 -1.1668 13 6 2.2105 0.0790 -2.2682 14 8 1.9899 1.2752 -2.2372 15 6 2.6828 -0.5239 -3.4607 16 16 3.2059 -2.1947 -3.6218 17 6 3.5561 -1.9778 -5.2770 18 6 3.2924 -0.7272 -5.6666 19 6 2.8106 0.1051 -4.6761 20 7 2.4827 1.4487 -4.8885 21 6 2.4641 2.1071 -6.0817 22 6 2.0929 3.3781 -5.8196 23 7 1.8874 3.5092 -4.5085 24 7 2.1025 2.3863 -3.9162 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.9027 -0.5284 4.4375 29 1 3.9417 -2.7506 -5.9256 30 1 3.4487 -0.3909 -6.6808 31 1 2.7000 1.6917 -7.0503 32 1 1.9804 4.1625 -6.5535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838801812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:19 Heat of formation + Delta-G solvation = 92.541630 kcal Electronic energy + Delta-G solvation = -20913.286344 eV Core-core repulsion = 17584.378150 eV Total energy + Delta-G solvation = -3328.908194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.10043 -39.91479 -38.36834 -35.86967 -33.38388 -33.15105 -31.12184 -30.63077 -29.57330 -26.04125 -25.22149 -23.10918 -22.95400 -21.47280 -20.48230 -19.68691 -18.54337 -17.33185 -16.65026 -16.10885 -16.03829 -15.39418 -15.12534 -14.88937 -14.82722 -14.33818 -14.09147 -13.49380 -13.02569 -12.91685 -12.50655 -12.25011 -11.93689 -11.73328 -11.46411 -11.13301 -11.12405 -11.05276 -10.82608 -10.18864 -9.74180 -9.68020 -9.37189 -9.29242 -9.13587 -9.06189 -8.64327 -8.43523 -6.19653 -4.21833 -0.01970 1.08068 1.17072 1.56058 2.25301 2.31567 2.64756 3.23233 3.34255 3.35806 3.40573 3.47743 4.25575 4.31419 4.41180 4.72300 4.86297 4.97742 5.12373 5.16313 5.39707 5.47593 5.52041 5.88489 6.13801 6.22290 6.33715 6.44522 6.60366 6.68648 7.07995 7.41815 7.55300 8.21226 8.34379 8.62846 8.86291 9.38322 10.92320 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.005529 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.697979 B = 5062.787979 C = 6366.896388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.191 3.809 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.087 0.913 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.290 1.290 11 H -0.260 1.260 12 O -0.336 6.336 13 C 0.499 3.501 14 O -0.451 6.451 15 C -0.250 4.250 16 S 0.330 5.670 17 C -0.231 4.231 18 C -0.159 4.159 19 C 0.192 3.808 20 N -0.318 5.318 21 C 0.002 3.998 22 C -0.072 4.072 23 N -0.261 5.261 24 N 0.044 4.956 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.269 0.731 29 H 0.182 0.818 30 H 0.153 0.847 31 H 0.190 0.810 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -1.775 -23.131 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.136 3.864 3 H 0.065 0.935 4 C -0.560 4.560 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.526 5.526 8 Si 0.706 3.294 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.185 1.185 12 O -0.252 6.252 13 C 0.341 3.659 14 O -0.336 6.336 15 C -0.372 4.372 16 S 0.599 5.401 17 C -0.370 4.370 18 C -0.192 4.192 19 C 0.083 3.917 20 N -0.100 5.100 21 C -0.146 4.146 22 C -0.225 4.225 23 N -0.134 5.134 24 N 0.064 4.936 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.199 0.801 30 H 0.171 0.829 31 H 0.207 0.793 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.239 -2.402 -20.359 20.622 hybrid contribution -0.529 1.787 -2.007 2.739 sum 1.710 -0.615 -22.366 22.440 Atomic orbital electron populations 1.22545 0.98677 1.01674 0.99855 1.20540 0.90443 0.94863 0.80532 0.93535 1.20764 1.33339 1.14736 0.87209 0.89542 1.24707 0.95604 0.96665 0.95242 1.69830 1.44834 1.39993 0.97980 0.86994 0.80718 0.83784 0.77898 1.20054 1.21714 1.18462 1.86165 1.76589 1.42193 1.20301 1.18421 0.77261 0.86162 0.84011 1.91118 1.46072 1.13832 1.82619 1.22737 1.17129 1.00958 0.96398 1.83756 1.53472 1.03249 0.99627 1.25361 1.06954 1.01190 1.03447 1.19400 1.06525 0.92992 1.00318 1.16724 1.00504 0.81511 0.93003 1.47921 1.46611 1.07958 1.07485 1.23494 1.05395 0.94159 0.91574 1.23207 1.08789 0.96628 0.93862 1.74567 1.13728 1.18357 1.06724 1.83688 1.13916 0.89820 1.06213 0.92600 0.94459 0.91930 0.92104 0.80082 0.82942 0.79263 0.79794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.01 37.16 0.33 -3.71 16 2 C 0.19 4.95 2.10 -27.88 -0.06 4.89 16 3 H 0.05 1.29 6.17 -51.92 -0.32 0.97 16 4 C -0.52 -15.16 9.47 -34.44 -0.33 -15.48 16 5 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 6 C 0.08 2.36 5.45 -17.82 -0.10 2.26 16 7 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 8 Si 0.88 22.32 24.37 -169.99 -4.14 18.18 16 9 H -0.27 -6.68 6.87 56.52 0.39 -6.30 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.26 -6.63 6.53 56.52 0.37 -6.26 16 12 O -0.34 -7.85 9.51 -41.17 -0.39 -8.24 16 13 C 0.50 10.64 7.68 32.06 0.25 10.89 16 14 O -0.45 -10.73 11.42 -19.40 -0.22 -10.96 16 15 C -0.25 -4.09 6.29 -38.54 -0.24 -4.33 16 16 S 0.33 3.77 22.83 -107.50 -2.45 1.32 16 17 C -0.23 -1.80 10.90 29.11 0.32 -1.49 16 18 C -0.16 -1.45 9.62 -41.27 -0.40 -1.85 16 19 C 0.19 2.69 6.74 -84.52 -0.57 2.12 16 20 N -0.32 -4.89 3.85 -11.11 -0.04 -4.93 16 21 C 0.00 0.03 11.09 -16.72 -0.19 -0.16 16 22 C -0.07 -0.87 11.86 -18.04 -0.21 -1.09 16 23 N -0.26 -4.63 12.33 30.09 0.37 -4.25 16 24 N 0.04 0.88 9.06 60.35 0.55 1.42 16 25 H 0.06 1.35 3.27 -51.93 -0.17 1.18 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 30 H 0.15 0.86 7.47 -52.49 -0.39 0.47 16 31 H 0.19 1.01 7.59 -52.49 -0.40 0.61 16 32 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 291.30 15.07 4.39 4.39 Total: -1.00 -36.28 291.30 -4.94 -41.22 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.58 Total: -3.97 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.19 Total: -7.93 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 1.65 Total: -34.01 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.61 Total: -19.20 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.45 Total: 1.32 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -36.28 -4.94 -41.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838801812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.760 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds