Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46624 * 2 1 4 4 C 1.50698 * 109.47164 * 119.99928 * 2 1 3 5 5 H 1.07997 * 119.99719 * 120.00955 * 4 2 1 6 6 C 1.37871 * 120.00127 * 299.99841 * 4 2 1 7 7 N 1.31508 * 120.00275 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00201 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47376 * 89.99198 * 8 6 4 10 10 H 1.48503 * 109.47238 * 209.99830 * 8 6 4 11 11 H 1.48502 * 109.47178 * 329.99639 * 8 6 4 12 12 O 1.42898 * 109.47133 * 240.00461 * 2 1 3 13 13 C 1.34947 * 117.00261 * 89.99423 * 12 2 1 14 14 O 1.21674 * 120.00024 * 0.02562 * 13 12 2 15 15 C 1.41724 * 119.99766 * 179.97438 * 13 12 2 16 16 S 1.75815 * 125.48467 * 353.28417 * 15 13 12 17 17 C 1.70566 * 91.67334 * 179.97438 * 16 15 13 18 18 C 1.33619 * 111.18454 * 0.02562 * 17 16 15 19 19 C 1.37445 * 125.47863 * 173.56163 * 15 13 12 20 20 N 1.39927 * 123.48979 * 0.02562 * 19 15 13 21 21 C 1.36298 * 126.86102 * 186.52066 * 20 19 15 22 22 C 1.34987 * 106.77380 * 179.97438 * 21 20 19 23 23 N 1.33360 * 109.01335 * 0.02562 * 22 21 20 24 24 N 1.28760 * 109.92710 * 359.74934 * 23 22 21 25 25 H 1.08997 * 109.47035 * 299.99500 * 1 2 3 26 26 H 1.08996 * 109.47674 * 60.00317 * 1 2 3 27 27 H 1.09001 * 109.46922 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00667 * 180.02562 * 7 6 4 29 29 H 1.08005 * 124.41054 * 179.97438 * 17 16 15 30 30 H 1.07991 * 122.45953 * 179.97438 * 18 17 16 31 31 H 1.07998 * 126.61438 * 0.02562 * 21 20 19 32 32 H 1.08002 * 125.48771 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9069 11 1 0.8471 2.1766 1.4921 12 8 2.0064 -0.6735 -1.1668 13 6 2.2105 0.0790 -2.2682 14 8 1.9899 1.2752 -2.2372 15 6 2.6828 -0.5239 -3.4607 16 16 3.2059 -2.1947 -3.6218 17 6 3.5561 -1.9778 -5.2770 18 6 3.2924 -0.7272 -5.6666 19 6 2.8106 0.1051 -4.6761 20 7 2.4827 1.4487 -4.8885 21 6 2.4641 2.1071 -6.0817 22 6 2.0929 3.3781 -5.8196 23 7 1.8874 3.5092 -4.5085 24 7 2.1025 2.3863 -3.9162 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.9027 -0.5284 4.4375 29 1 3.9417 -2.7506 -5.9256 30 1 3.4487 -0.3909 -6.6808 31 1 2.7000 1.6917 -7.0503 32 1 1.9804 4.1625 -6.5535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838801812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = 65.517758 kcal Electronic energy + Delta-G solvation = -20914.458187 eV Core-core repulsion = 17584.378150 eV Total energy + Delta-G solvation = -3330.080037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14122 -41.48229 -39.44707 -37.56290 -35.30263 -34.37498 -32.85994 -31.88434 -30.74136 -27.43428 -27.05919 -24.50493 -23.96383 -22.63780 -22.08002 -20.63807 -20.09634 -18.80841 -18.52697 -17.51348 -17.31449 -16.95086 -16.56752 -16.02373 -15.75666 -15.55034 -15.14458 -14.88957 -14.63491 -14.44424 -14.30243 -13.73508 -13.55735 -13.49887 -12.94909 -12.69428 -12.27566 -12.14661 -12.10405 -11.97758 -11.68781 -11.65992 -11.24531 -10.88282 -10.82043 -10.30551 -10.07125 -9.38710 -8.47709 -6.55258 -1.05088 0.13794 0.32477 0.78197 1.18509 1.23160 1.27548 1.35337 1.37505 1.67667 1.94790 1.98268 2.16717 2.85203 3.38192 3.60585 3.85571 4.03940 4.15343 4.18077 4.22857 4.35953 4.44723 4.49172 4.66579 4.68920 4.85979 4.98534 5.12786 5.22207 5.32694 5.61888 5.76628 6.15119 6.47473 6.88787 7.10121 7.26629 8.68076 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.005529 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.697979 B = 5062.787979 C = 6366.896388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.196 3.804 3 H 0.022 0.978 4 C -0.535 4.535 5 H 0.052 0.948 6 C 0.037 3.963 7 N -0.926 5.926 8 Si 0.934 3.066 9 H -0.250 1.250 10 H -0.280 1.280 11 H -0.267 1.267 12 O -0.348 6.348 13 C 0.493 3.507 14 O -0.486 6.486 15 C -0.321 4.321 16 S 0.326 5.674 17 C -0.179 4.179 18 C -0.160 4.160 19 C 0.201 3.799 20 N -0.328 5.328 21 C 0.034 3.966 22 C -0.082 4.082 23 N -0.300 5.300 24 N -0.039 5.039 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.276 0.724 29 H 0.236 0.764 30 H 0.204 0.796 31 H 0.256 0.744 32 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 -2.421 -27.584 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.141 3.859 3 H 0.039 0.961 4 C -0.572 4.572 5 H 0.070 0.930 6 C -0.163 4.163 7 N -0.564 5.564 8 Si 0.759 3.241 9 H -0.175 1.175 10 H -0.206 1.206 11 H -0.192 1.192 12 O -0.265 6.265 13 C 0.338 3.662 14 O -0.373 6.373 15 C -0.442 4.442 16 S 0.594 5.406 17 C -0.317 4.317 18 C -0.191 4.191 19 C 0.089 3.911 20 N -0.111 5.111 21 C -0.115 4.115 22 C -0.236 4.236 23 N -0.171 5.171 24 N -0.018 5.018 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.252 0.748 30 H 0.221 0.779 31 H 0.272 0.728 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.395 -3.062 -24.795 25.098 hybrid contribution -0.427 1.898 -0.910 2.148 sum 1.969 -1.165 -25.705 25.807 Atomic orbital electron populations 1.22409 0.96793 1.02443 1.00218 1.20154 0.91797 0.93089 0.80860 0.96073 1.20910 1.33242 1.13951 0.89112 0.92979 1.25436 0.96753 0.99418 0.94737 1.69929 1.46113 1.41704 0.98689 0.86079 0.80199 0.80026 0.77755 1.17509 1.20620 1.19230 1.86135 1.77302 1.42521 1.20548 1.19187 0.76539 0.86042 0.84449 1.91126 1.47919 1.15096 1.83124 1.22589 1.22156 1.04080 0.95403 1.83748 1.53361 1.00341 1.03121 1.25987 1.02818 1.01752 1.01181 1.19831 1.05714 0.92298 1.01210 1.17453 0.98936 0.81306 0.93379 1.48169 1.46201 1.08333 1.08402 1.24591 1.01559 0.93137 0.92226 1.24067 1.08185 0.98696 0.92695 1.74512 1.14435 1.18583 1.09593 1.83685 1.18244 0.91307 1.08568 0.92742 0.93431 0.90905 0.91469 0.74787 0.77919 0.72849 0.75830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 9.01 71.98 0.65 -7.20 16 2 C 0.20 10.73 2.10 29.85 0.06 10.79 16 3 H 0.02 1.27 6.17 -2.38 -0.01 1.25 16 4 C -0.53 -32.64 9.47 25.60 0.24 -32.40 16 5 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 6 C 0.04 2.21 5.45 84.65 0.46 2.67 16 7 N -0.93 -57.89 13.96 21.44 0.30 -57.59 16 8 Si 0.93 46.99 24.37 68.60 1.67 48.66 16 9 H -0.25 -11.59 6.87 99.48 0.68 -10.90 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.27 -13.72 6.53 99.48 0.65 -13.07 16 12 O -0.35 -17.33 9.51 -58.64 -0.56 -17.88 16 13 C 0.49 22.33 7.68 68.68 0.53 22.86 16 14 O -0.49 -24.82 11.42 19.27 0.22 -24.60 16 15 C -0.32 -10.63 6.29 22.94 0.14 -10.48 16 16 S 0.33 6.97 22.83 -56.49 -1.29 5.68 16 17 C -0.18 -1.79 10.90 66.77 0.73 -1.06 16 18 C -0.16 -2.03 9.62 21.18 0.20 -1.82 16 19 C 0.20 5.23 6.74 37.62 0.25 5.49 16 20 N -0.33 -9.67 3.85 -189.05 -0.73 -10.40 16 21 C 0.03 0.59 11.09 83.25 0.92 1.52 16 22 C -0.08 -1.81 11.86 83.71 0.99 -0.82 16 23 N -0.30 -10.87 12.33 -58.71 -0.72 -11.59 16 24 N -0.04 -1.61 9.06 37.02 0.34 -1.28 16 25 H 0.05 2.63 3.27 -2.39 -0.01 2.62 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 29 H 0.24 -0.06 8.06 -2.91 -0.02 -0.09 16 30 H 0.20 0.54 7.47 -2.91 -0.02 0.51 16 31 H 0.26 0.74 7.59 -2.91 -0.02 0.72 16 32 H 0.23 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -90.06 291.30 5.51 -84.55 By element: Atomic # 1 Polarization: -6.18 SS G_CDS: 1.09 Total: -5.09 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.19 Total: -10.46 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -0.82 Total: -80.85 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.34 Total: -42.48 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.66 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.29 Total: 5.68 kcal Total: -90.06 5.51 -84.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838801812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.066 kcal (2) G-P(sol) polarization free energy of solvation -90.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds