Wall clock time and date at job start Tue Mar 31 2020 07:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47037 * 270.00267 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99678 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99843 * 3 2 1 7 7 C 1.38654 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99901 * 0.02562 * 7 2 1 9 9 O 1.34823 * 119.99559 * 179.97438 * 7 2 1 10 10 C 1.35753 * 117.00099 * 185.54585 * 9 7 2 11 11 C 1.38939 * 120.04300 * 185.92619 * 10 9 7 12 12 C 1.38108 * 120.04026 * 180.02562 * 11 10 9 13 13 C 1.38237 * 120.12601 * 359.96339 * 12 11 10 14 14 C 1.38786 * 120.07658 * 0.03586 * 13 12 11 15 15 O 1.35926 * 120.01757 * 180.02562 * 14 13 12 16 16 C 1.34261 * 117.00031 * 245.95958 * 15 14 13 17 17 O 1.20821 * 120.00488 * 355.08582 * 16 15 14 18 18 C 1.50706 * 119.99992 * 175.08242 * 16 15 14 19 19 H 1.09001 * 115.54586 * 34.33152 * 18 16 15 20 20 C 1.53003 * 117.50153 * 248.62559 * 18 16 15 21 21 C 1.52999 * 117.50071 * 179.97438 * 18 16 15 22 22 H 1.09004 * 117.49768 * 0.02562 * 21 18 16 23 23 N 1.46501 * 117.49789 * 215.00134 * 21 18 16 24 24 O 1.21801 * 119.99673 * 120.00554 * 23 21 18 25 25 O 1.21796 * 119.99983 * 300.00113 * 23 21 18 26 26 C 1.38606 * 119.96055 * 359.97438 * 14 13 12 27 27 H 0.97004 * 119.99547 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.98144 * 359.97438 * 11 10 9 29 29 H 1.07994 * 119.94037 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.96114 * 180.02562 * 13 12 11 31 31 H 1.09002 * 117.49479 * 359.97438 * 20 18 16 32 32 H 1.08990 * 117.50203 * 145.01693 * 20 18 16 33 33 H 1.08005 * 120.05987 * 179.72191 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4048 -0.1163 11 6 5.3551 -2.4930 -0.0006 12 6 5.9821 -3.7178 -0.1195 13 6 5.2373 -4.8587 -0.3530 14 6 3.8568 -4.7764 -0.4694 15 8 3.1256 -5.8991 -0.6985 16 6 2.4894 -5.9821 -1.8779 17 8 2.5088 -5.0463 -2.6420 18 6 1.7510 -7.2424 -2.2487 19 1 1.2746 -7.7687 -1.4216 20 6 2.3239 -8.0876 -3.3882 21 6 1.0456 -7.2746 -3.6061 22 1 1.1160 -6.3842 -4.2310 23 7 -0.2179 -8.0108 -3.6945 24 8 -1.2382 -7.4321 -4.0223 25 8 -0.2479 -9.2016 -3.4403 26 6 3.2241 -3.5489 -0.3509 27 1 -0.4850 0.8401 0.0004 28 1 5.9393 -1.6031 0.1816 29 1 7.0562 -3.7844 -0.0297 30 1 5.7303 -5.8152 -0.4451 31 1 3.2347 -7.7318 -3.8699 32 1 2.2247 -9.1702 -3.3108 33 1 2.1503 -3.4824 -0.4457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:20 Heat of formation + Delta-G solvation = -44.514060 kcal Electronic energy + Delta-G solvation = -22454.488753 eV Core-core repulsion = 18644.591755 eV Total energy + Delta-G solvation = -3809.896997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.61269 -41.35717 -39.29178 -38.21560 -36.93551 -36.45720 -36.01705 -32.51104 -30.13555 -29.39631 -28.32471 -25.94816 -25.30773 -22.90107 -22.41374 -21.65853 -20.74593 -19.48223 -18.78345 -18.28541 -18.18875 -17.83806 -17.20845 -16.40970 -16.23907 -15.44843 -14.87529 -14.68216 -14.16273 -13.99996 -13.68754 -13.48030 -13.05416 -12.75429 -12.36181 -12.10988 -12.08533 -11.79939 -11.76586 -11.47859 -11.33344 -11.31898 -11.26451 -10.98686 -10.77568 -10.63175 -10.34308 -9.66332 -9.00295 -8.41620 -7.64848 -6.53455 -4.21591 0.12344 1.10329 1.48032 1.70462 1.95249 2.46796 2.72392 3.14543 3.18758 3.23695 3.31784 3.56421 4.06841 4.13408 4.19161 4.44421 4.64872 4.68323 4.89307 4.95898 4.98673 5.35165 5.53741 5.71377 5.84814 6.00109 6.02747 6.23506 6.55169 6.77927 6.84089 6.90757 7.23257 7.33752 7.57555 7.73586 7.88405 8.79863 9.36835 10.53617 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.004244 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.345979 B = 6596.406246 C = 8120.596841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.394 4.394 8 H 0.104 0.896 9 O -0.206 6.206 10 C 0.169 3.831 11 C -0.184 4.184 12 C -0.065 4.065 13 C -0.202 4.202 14 C 0.112 3.888 15 O -0.280 6.280 16 C 0.484 3.516 17 O -0.467 6.467 18 C -0.117 4.117 19 H 0.160 0.840 20 C -0.101 4.101 21 C -0.062 4.062 22 H 0.189 0.811 23 N 0.010 4.990 24 O -0.142 6.142 25 O -0.159 6.159 26 C -0.218 4.218 27 H 0.282 0.718 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.794 -14.664 -4.560 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.122 0.878 9 O -0.110 6.110 10 C 0.116 3.884 11 C -0.203 4.203 12 C -0.084 4.084 13 C -0.221 4.221 14 C 0.071 3.929 15 O -0.194 6.194 16 C 0.325 3.675 17 O -0.350 6.350 18 C -0.137 4.137 19 H 0.178 0.822 20 C -0.139 4.139 21 C -0.161 4.161 22 H 0.206 0.794 23 N 0.533 4.467 24 O -0.363 6.363 25 O -0.376 6.376 26 C -0.238 4.238 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.319 -13.576 -4.714 16.606 hybrid contribution -0.365 0.704 -0.006 0.793 sum 7.954 -12.873 -4.720 15.851 Atomic orbital electron populations 1.69651 1.05645 1.28811 1.46673 1.24501 0.95066 0.98994 0.95268 0.86151 0.80334 0.81148 0.79118 1.19727 1.20529 1.18207 1.20743 0.76619 0.96721 1.52812 0.87817 1.83607 1.22854 1.25173 1.79393 1.18864 0.91467 0.85213 0.92869 1.20361 0.91846 0.98447 1.09691 1.20498 0.98853 0.91018 0.98001 1.20467 0.90812 0.99100 1.11706 1.18268 0.89476 0.83583 1.01537 1.84479 1.58317 1.41408 1.35219 1.22167 0.77710 0.87427 0.80175 1.90815 1.56554 1.37640 1.50029 1.22072 1.01330 0.97162 0.93156 0.82233 1.23774 0.93991 1.00853 0.95260 1.25140 0.83200 1.03138 1.04625 0.79357 1.43702 1.03486 1.01269 0.98267 1.94629 1.23069 1.70249 1.48383 1.94538 1.92782 0.98503 1.51817 1.21344 1.01815 0.91409 1.09203 0.90774 0.85702 0.85568 0.86277 0.84394 0.83570 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.08 13.96 55.48 0.77 -24.30 16 2 C 0.07 1.85 5.49 -17.51 -0.10 1.75 16 3 Si 0.91 21.31 28.62 -169.99 -4.86 16.45 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.08 9.90 30.89 0.31 -10.78 16 8 H 0.10 3.04 5.53 -52.49 -0.29 2.75 16 9 O -0.21 -5.35 8.58 0.06 0.00 -5.35 16 10 C 0.17 3.84 6.64 -39.13 -0.26 3.58 16 11 C -0.18 -3.42 9.99 -39.37 -0.39 -3.82 16 12 C -0.07 -1.02 10.03 -39.63 -0.40 -1.41 16 13 C -0.20 -3.23 9.99 -39.38 -0.39 -3.62 16 14 C 0.11 2.08 5.46 -39.24 -0.21 1.87 16 15 O -0.28 -4.51 10.05 -23.62 -0.24 -4.75 16 16 C 0.48 7.12 7.55 36.01 0.27 7.39 16 17 O -0.47 -8.51 15.33 -18.74 -0.29 -8.79 16 18 C -0.12 -1.16 6.19 -91.77 -0.57 -1.73 16 19 H 0.16 1.34 8.14 -51.93 -0.42 0.92 16 20 C -0.10 -0.67 9.72 -26.70 -0.26 -0.93 16 21 C -0.06 -0.62 6.43 -67.90 -0.44 -1.05 16 22 H 0.19 1.92 7.67 -51.93 -0.40 1.53 16 23 N 0.01 0.12 4.33 -4.87 -0.02 0.10 16 24 O -0.14 -2.04 19.24 -29.46 -0.57 -2.60 16 25 O -0.16 -1.90 18.28 -29.46 -0.54 -2.44 16 26 C -0.22 -4.81 7.99 -39.25 -0.31 -5.12 16 27 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.15 0.68 7.63 -51.93 -0.40 0.29 16 33 H 0.14 3.34 5.72 -52.48 -0.30 3.04 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -32.08 310.42 -6.45 -38.53 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.63 Total: 2.36 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.75 Total: -13.88 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.75 Total: -24.21 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.63 Total: -23.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.45 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.08 -6.45 -38.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.984 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds