Wall clock time and date at job start Tue Mar 31 2020 07:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47037 * 270.00267 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99678 * 3 2 1 6 6 H 1.48495 * 109.47235 * 149.99843 * 3 2 1 7 7 C 1.38654 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99901 * 0.02562 * 7 2 1 9 9 O 1.34823 * 119.99559 * 179.97438 * 7 2 1 10 10 C 1.35753 * 117.00099 * 185.54585 * 9 7 2 11 11 C 1.38939 * 120.04300 * 185.92619 * 10 9 7 12 12 C 1.38108 * 120.04026 * 180.02562 * 11 10 9 13 13 C 1.38237 * 120.12601 * 359.96339 * 12 11 10 14 14 C 1.38786 * 120.07658 * 0.03586 * 13 12 11 15 15 O 1.35926 * 120.01757 * 180.02562 * 14 13 12 16 16 C 1.34261 * 117.00031 * 245.95958 * 15 14 13 17 17 O 1.20821 * 120.00488 * 355.08582 * 16 15 14 18 18 C 1.50706 * 119.99992 * 175.08242 * 16 15 14 19 19 H 1.09001 * 115.54586 * 34.33152 * 18 16 15 20 20 C 1.53003 * 117.50153 * 248.62559 * 18 16 15 21 21 C 1.52999 * 117.50071 * 179.97438 * 18 16 15 22 22 H 1.09004 * 117.49768 * 0.02562 * 21 18 16 23 23 N 1.46501 * 117.49789 * 215.00134 * 21 18 16 24 24 O 1.21801 * 119.99673 * 120.00554 * 23 21 18 25 25 O 1.21796 * 119.99983 * 300.00113 * 23 21 18 26 26 C 1.38606 * 119.96055 * 359.97438 * 14 13 12 27 27 H 0.97004 * 119.99547 * 359.97438 * 1 2 3 28 28 H 1.07994 * 119.98144 * 359.97438 * 11 10 9 29 29 H 1.07994 * 119.94037 * 179.97438 * 12 11 10 30 30 H 1.07997 * 119.96114 * 180.02562 * 13 12 11 31 31 H 1.09002 * 117.49479 * 359.97438 * 20 18 16 32 32 H 1.08990 * 117.50203 * 145.01693 * 20 18 16 33 33 H 1.08005 * 120.05987 * 179.72191 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4048 -0.1163 11 6 5.3551 -2.4930 -0.0006 12 6 5.9821 -3.7178 -0.1195 13 6 5.2373 -4.8587 -0.3530 14 6 3.8568 -4.7764 -0.4694 15 8 3.1256 -5.8991 -0.6985 16 6 2.4894 -5.9821 -1.8779 17 8 2.5088 -5.0463 -2.6420 18 6 1.7510 -7.2424 -2.2487 19 1 1.2746 -7.7687 -1.4216 20 6 2.3239 -8.0876 -3.3882 21 6 1.0456 -7.2746 -3.6061 22 1 1.1160 -6.3842 -4.2310 23 7 -0.2179 -8.0108 -3.6945 24 8 -1.2382 -7.4321 -4.0223 25 8 -0.2479 -9.2016 -3.4403 26 6 3.2241 -3.5489 -0.3509 27 1 -0.4850 0.8401 0.0004 28 1 5.9393 -1.6031 0.1816 29 1 7.0562 -3.7844 -0.0297 30 1 5.7303 -5.8152 -0.4451 31 1 3.2347 -7.7318 -3.8699 32 1 2.2247 -9.1702 -3.3108 33 1 2.1503 -3.4824 -0.4457 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344604.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:20 Heat of formation + Delta-G solvation = -64.223635 kcal Electronic energy + Delta-G solvation = -22455.343424 eV Core-core repulsion = 18644.591755 eV Total energy + Delta-G solvation = -3810.751669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.57096 -42.64598 -40.85310 -39.45535 -38.06889 -37.62770 -37.35823 -34.55721 -31.60325 -30.96986 -29.31810 -27.54059 -26.71098 -24.04102 -23.45642 -23.18527 -22.01362 -20.44366 -20.09594 -19.86621 -19.52297 -18.90047 -18.38694 -17.80406 -17.62436 -17.03080 -16.31013 -15.98799 -15.90197 -15.59444 -14.97243 -14.80828 -14.40746 -14.23873 -13.98522 -13.46333 -13.10350 -12.90526 -12.85375 -12.77286 -12.69002 -12.57000 -12.34987 -12.28249 -12.19379 -12.09863 -12.01106 -11.61381 -11.00717 -9.89460 -9.30033 -8.59951 -6.35669 -0.87077 -0.05346 0.33088 0.45360 0.56930 1.26502 1.31124 1.35864 1.47978 1.85920 2.21173 2.39650 2.60754 2.85128 2.92429 2.95160 3.19286 3.43054 3.91660 3.94288 4.09215 4.22161 4.36353 4.40081 4.47218 4.65679 4.77789 5.05689 5.14005 5.22686 5.33330 5.40349 5.58781 5.71479 5.98046 6.32154 6.41244 6.72449 7.40879 8.52049 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.004244 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.345979 B = 6596.406246 C = 8120.596841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.405 4.405 8 H 0.067 0.933 9 O -0.234 6.234 10 C 0.130 3.870 11 C -0.180 4.180 12 C -0.047 4.047 13 C -0.172 4.172 14 C 0.101 3.899 15 O -0.277 6.277 16 C 0.484 3.516 17 O -0.510 6.510 18 C -0.122 4.122 19 H 0.179 0.821 20 C -0.052 4.052 21 C -0.081 4.081 22 H 0.178 0.822 23 N 0.014 4.986 24 O -0.222 6.222 25 O -0.112 6.112 26 C -0.245 4.245 27 H 0.287 0.713 28 H 0.146 0.854 29 H 0.186 0.814 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.253 -17.236 -4.569 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.481 4.481 8 H 0.085 0.915 9 O -0.141 6.141 10 C 0.080 3.920 11 C -0.198 4.198 12 C -0.065 4.065 13 C -0.190 4.190 14 C 0.060 3.940 15 O -0.191 6.191 16 C 0.328 3.672 17 O -0.396 6.396 18 C -0.142 4.142 19 H 0.197 0.803 20 C -0.089 4.089 21 C -0.180 4.180 22 H 0.195 0.805 23 N 0.535 4.465 24 O -0.424 6.424 25 O -0.346 6.346 26 C -0.265 4.265 27 H 0.097 0.903 28 H 0.164 0.836 29 H 0.203 0.797 30 H 0.186 0.814 31 H 0.178 0.822 32 H 0.199 0.801 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.714 -16.063 -4.770 21.033 hybrid contribution -1.453 1.011 0.015 1.770 sum 11.261 -15.052 -4.755 19.390 Atomic orbital electron populations 1.69750 1.07223 1.29957 1.49255 1.25417 0.95958 1.02603 0.94928 0.85120 0.79014 0.76560 0.79413 1.19117 1.18841 1.17783 1.20572 0.78094 0.95802 1.53669 0.91520 1.83535 1.21060 1.26883 1.82619 1.19529 0.93398 0.84457 0.94584 1.20837 0.89834 1.01015 1.08163 1.21204 1.01554 0.89052 0.94670 1.21145 0.89211 1.01539 1.07123 1.18515 0.91026 0.82957 1.01491 1.84489 1.58475 1.39997 1.36166 1.23058 0.76784 0.88424 0.78973 1.90809 1.58067 1.39596 1.51174 1.22171 1.02111 0.95688 0.94247 0.80336 1.24212 0.92213 1.01897 0.90531 1.25241 0.83577 1.04429 1.04771 0.80503 1.43943 1.03805 1.01208 0.97554 1.94664 1.24408 1.70696 1.52600 1.94480 1.92745 0.98614 1.48730 1.21254 1.00067 0.93652 1.11567 0.90321 0.83623 0.79712 0.81429 0.82167 0.80145 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.68 13.96 21.61 0.30 -56.38 16 2 C 0.01 0.58 5.49 84.83 0.47 1.05 16 3 Si 0.98 45.60 28.62 68.60 1.96 47.56 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.25 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.41 -24.73 9.90 67.92 0.67 -24.06 16 8 H 0.07 4.41 5.53 -2.91 -0.02 4.39 16 9 O -0.23 -12.80 8.58 -22.70 -0.19 -13.00 16 10 C 0.13 6.08 6.64 22.56 0.15 6.23 16 11 C -0.18 -6.25 9.99 22.41 0.22 -6.02 16 12 C -0.05 -1.21 10.03 22.24 0.22 -0.99 16 13 C -0.17 -4.66 9.99 22.40 0.22 -4.44 16 14 C 0.10 3.66 5.46 22.49 0.12 3.78 16 15 O -0.28 -8.66 10.05 4.54 0.05 -8.62 16 16 C 0.48 14.11 7.55 71.24 0.54 14.65 16 17 O -0.51 -19.35 15.33 21.98 0.34 -19.01 16 18 C -0.12 -2.20 6.19 -11.54 -0.07 -2.27 16 19 H 0.18 2.55 8.14 -2.39 -0.02 2.53 16 20 C -0.05 -0.46 9.72 30.61 0.30 -0.17 16 21 C -0.08 -1.54 6.43 45.01 0.29 -1.25 16 22 H 0.18 3.80 7.67 -2.38 -0.02 3.78 16 23 N 0.01 0.34 4.33 -169.31 -0.73 -0.40 16 24 O -0.22 -6.79 19.24 18.89 0.36 -6.43 16 25 O -0.11 -2.38 18.28 18.89 0.35 -2.03 16 26 C -0.25 -11.44 7.99 22.48 0.18 -11.26 16 27 H 0.29 16.07 8.31 -92.70 -0.77 15.30 16 28 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 29 H 0.19 2.74 8.06 -2.91 -0.02 2.71 16 30 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.18 0.53 7.63 -2.39 -0.02 0.51 16 33 H 0.10 5.19 5.72 -2.91 -0.02 5.17 16 Total: -1.00 -80.08 310.42 6.91 -73.17 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.17 Total: 9.87 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 3.31 Total: -24.74 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.43 Total: -56.77 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: 0.90 Total: -49.09 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.96 Total: 47.56 kcal Total: -80.08 6.91 -73.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344604.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.946 kcal (2) G-P(sol) polarization free energy of solvation -80.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds