Wall clock time and date at job start Tue Mar 31 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64484 * 59.29883 * 9 7 2 11 11 C 1.55161 * 110.72254 * 296.16080 * 9 7 2 12 12 C 1.54910 * 101.58416 * 206.13664 * 11 9 7 13 13 N 1.47427 * 104.83145 * 37.00676 * 12 11 9 14 14 C 1.34773 * 125.65030 * 155.90933 * 13 12 11 15 15 O 1.21287 * 120.00051 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00159 * 359.97438 * 14 13 12 17 17 H 1.09007 * 115.54764 * 325.58479 * 16 14 13 18 18 C 1.52999 * 117.50253 * 111.24914 * 16 14 13 19 19 C 1.52995 * 117.50149 * 179.91629 * 16 14 13 20 20 Cl 1.80299 * 117.50040 * 359.97438 * 19 16 14 21 21 Cl 1.80299 * 117.49927 * 144.99782 * 19 16 14 22 22 C 1.47320 * 108.73807 * 335.71649 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96703 * 114.00054 * 300.70701 * 10 9 7 25 25 H 1.09006 * 110.99956 * 324.20399 * 11 9 7 26 26 H 1.08989 * 111.00674 * 88.05873 * 11 9 7 27 27 H 1.08994 * 110.37231 * 155.84287 * 12 11 9 28 28 H 1.08997 * 110.36792 * 278.05950 * 12 11 9 29 29 H 1.08998 * 117.50415 * 214.97912 * 18 16 14 30 30 H 1.09001 * 117.49393 * 0.02562 * 18 16 14 31 31 H 1.08999 * 110.06742 * 241.87586 * 22 13 12 32 32 H 1.08997 * 109.85228 * 120.60864 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4074 -2.5938 -1.1500 11 6 0.4229 -2.6550 1.3023 12 6 0.3234 -4.1960 1.4252 13 7 1.6286 -4.6970 0.9574 14 6 2.1817 -5.8797 1.2916 15 8 3.2656 -6.1902 0.8446 16 6 1.4533 -6.8164 2.2206 17 1 0.8636 -6.3384 3.0028 18 6 0.9171 -8.1220 1.6299 19 6 2.1327 -8.1446 2.5601 20 17 3.7432 -8.4696 1.8175 21 17 1.8965 -8.7992 4.2233 22 6 2.2270 -3.6931 0.0604 23 1 -0.4850 0.8401 0.0004 24 1 -0.2495 -1.8872 -1.2150 25 1 0.9518 -2.2285 2.1547 26 1 -0.5647 -2.2071 1.1934 27 1 0.1565 -4.4838 2.4631 28 1 -0.4793 -4.5759 0.7932 29 1 -0.0250 -8.5031 2.0237 30 1 1.0916 -8.3035 0.5694 31 1 2.3601 -4.1142 -0.9362 32 1 3.1876 -3.3667 0.4586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:50 Heat of formation + Delta-G solvation = -57.888899 kcal Electronic energy + Delta-G solvation = -19472.691057 eV Core-core repulsion = 16100.490398 eV Total energy + Delta-G solvation = -3372.200659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.037 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91077 -37.96231 -36.82389 -36.00308 -35.08490 -34.38741 -32.23620 -29.85594 -28.50555 -25.81918 -23.83685 -22.50823 -22.00814 -19.73854 -18.85372 -17.73693 -17.12158 -15.88516 -15.55064 -15.08077 -14.89707 -14.37232 -14.07439 -13.45550 -13.18682 -12.98645 -12.76309 -12.28447 -12.09772 -12.03696 -11.62832 -11.46369 -11.40711 -11.16543 -10.97438 -10.91443 -10.68517 -10.56518 -10.52501 -10.18562 -10.04102 -9.46939 -9.19116 -8.72165 -8.28256 -8.10823 -6.34496 -4.41797 1.05381 2.08601 2.49916 3.16777 3.18603 3.24959 3.29678 3.44279 3.98916 4.22194 4.25036 4.70446 4.93291 4.97534 5.21830 5.43828 5.48667 5.70290 5.83655 5.94281 6.12841 6.37825 6.60111 6.81919 6.88331 7.23105 7.27814 7.68235 7.94659 7.97310 8.47421 8.60921 9.25715 9.35814 10.73274 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.032134 B = 0.003843 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.132420 B = 7284.711030 C = 7475.187865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.247 3.753 10 O -0.586 6.586 11 C -0.136 4.136 12 C 0.094 3.906 13 N -0.601 5.601 14 C 0.544 3.456 15 O -0.526 6.526 16 C -0.152 4.152 17 H 0.143 0.857 18 C -0.118 4.118 19 C 0.021 3.979 20 Cl -0.055 7.055 21 Cl -0.097 7.097 22 C 0.125 3.875 23 H 0.269 0.731 24 H 0.385 0.615 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -13.124 6.080 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.175 4.175 12 C -0.029 4.029 13 N -0.333 5.333 14 C 0.330 3.670 15 O -0.403 6.403 16 C -0.174 4.174 17 H 0.161 0.839 18 C -0.156 4.156 19 C -0.031 4.031 20 Cl -0.027 7.027 21 Cl -0.070 7.070 22 C 0.004 3.996 23 H 0.079 0.921 24 H 0.236 0.764 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.275 -13.833 5.809 15.058 hybrid contribution 0.025 1.438 0.441 1.504 sum -1.250 -12.396 6.250 13.938 Atomic orbital electron populations 1.69635 1.05972 1.27751 1.50316 1.24979 0.95027 0.99550 0.93379 0.86407 0.79930 0.82334 0.78285 1.20450 1.19646 1.20981 1.21534 0.93750 0.90201 1.51939 0.91702 1.19447 0.86560 0.90720 0.82564 1.86111 1.51723 1.54882 1.46843 1.23318 1.02958 0.90120 1.01084 1.22541 0.84712 0.97793 0.97829 1.48628 1.20882 1.16815 1.47000 1.18796 0.85548 0.80968 0.81731 1.90805 1.20446 1.74392 1.54684 1.23090 1.01606 0.90073 1.02628 0.83928 1.23895 0.95752 0.95658 1.00279 1.26369 0.88820 1.01858 0.86046 1.98785 1.27281 1.95539 1.81137 1.98742 1.96398 1.87360 1.24544 1.22160 0.97118 0.87784 0.92563 0.92122 0.76434 0.91385 0.89400 0.92190 0.91681 0.85398 0.85657 0.91860 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.34 10.67 55.43 0.59 -21.74 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.62 8.21 -34.44 -0.28 -13.91 16 8 H 0.06 1.66 7.55 -52.49 -0.40 1.27 16 9 C 0.25 5.72 0.85 -89.94 -0.08 5.64 16 10 O -0.59 -14.17 13.07 -35.23 -0.46 -14.63 16 11 C -0.14 -2.77 5.57 -24.58 -0.14 -2.91 16 12 C 0.09 1.56 6.68 -2.53 -0.02 1.55 16 13 N -0.60 -11.10 3.33 -170.28 -0.57 -11.67 16 14 C 0.54 9.42 7.63 -10.99 -0.08 9.33 16 15 O -0.53 -10.54 14.03 5.55 0.08 -10.46 16 16 C -0.15 -1.94 5.37 -91.78 -0.49 -2.43 16 17 H 0.14 1.55 7.07 -51.92 -0.37 1.19 16 18 C -0.12 -1.19 9.92 -26.69 -0.26 -1.46 16 19 C 0.02 0.26 3.62 -26.69 -0.10 0.17 16 20 Cl -0.05 -0.80 26.13 -51.86 -1.35 -2.16 16 21 Cl -0.10 -1.08 29.29 -51.86 -1.52 -2.60 16 22 C 0.12 2.70 6.25 -2.90 -0.02 2.68 16 23 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 24 H 0.38 9.36 7.23 45.56 0.33 9.69 16 25 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 26 H 0.09 1.86 7.65 -51.94 -0.40 1.46 16 27 H 0.06 0.82 7.01 -51.93 -0.36 0.45 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.07 1.64 7.64 -51.93 -0.40 1.24 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -27.13 299.74 -8.13 -35.26 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -2.83 Total: 8.29 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.56 Total: 0.39 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.02 Total: -33.42 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.38 Total: -25.09 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -2.87 Total: -4.76 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.13 -8.13 -35.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.629 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds