Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.64484 * 59.29883 * 9 7 2 11 11 C 1.55161 * 110.72254 * 296.16080 * 9 7 2 12 12 C 1.54910 * 101.58416 * 206.13664 * 11 9 7 13 13 N 1.47427 * 104.83145 * 37.00676 * 12 11 9 14 14 C 1.34773 * 125.65030 * 155.90933 * 13 12 11 15 15 O 1.21287 * 120.00051 * 179.97438 * 14 13 12 16 16 C 1.50698 * 120.00159 * 359.97438 * 14 13 12 17 17 H 1.09007 * 115.54764 * 325.58479 * 16 14 13 18 18 C 1.52999 * 117.50253 * 111.24914 * 16 14 13 19 19 C 1.52995 * 117.50149 * 179.91629 * 16 14 13 20 20 Cl 1.80299 * 117.50040 * 359.97438 * 19 16 14 21 21 Cl 1.80299 * 117.49927 * 144.99782 * 19 16 14 22 22 C 1.47320 * 108.73807 * 335.71649 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96703 * 114.00054 * 300.70701 * 10 9 7 25 25 H 1.09006 * 110.99956 * 324.20399 * 11 9 7 26 26 H 1.08989 * 111.00674 * 88.05873 * 11 9 7 27 27 H 1.08994 * 110.37231 * 155.84287 * 12 11 9 28 28 H 1.08997 * 110.36792 * 278.05950 * 12 11 9 29 29 H 1.08998 * 117.50415 * 214.97912 * 18 16 14 30 30 H 1.09001 * 117.49393 * 0.02562 * 18 16 14 31 31 H 1.08999 * 110.06742 * 241.87586 * 22 13 12 32 32 H 1.08997 * 109.85228 * 120.60864 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4074 -2.5938 -1.1500 11 6 0.4229 -2.6550 1.3023 12 6 0.3234 -4.1960 1.4252 13 7 1.6286 -4.6970 0.9574 14 6 2.1817 -5.8797 1.2916 15 8 3.2656 -6.1902 0.8446 16 6 1.4533 -6.8164 2.2206 17 1 0.8636 -6.3384 3.0028 18 6 0.9171 -8.1220 1.6299 19 6 2.1327 -8.1446 2.5601 20 17 3.7432 -8.4696 1.8175 21 17 1.8965 -8.7992 4.2233 22 6 2.2270 -3.6931 0.0604 23 1 -0.4850 0.8401 0.0004 24 1 -0.2495 -1.8872 -1.2150 25 1 0.9518 -2.2285 2.1547 26 1 -0.5647 -2.2071 1.1934 27 1 0.1565 -4.4838 2.4631 28 1 -0.4793 -4.5759 0.7932 29 1 -0.0250 -8.5031 2.0237 30 1 1.0916 -8.3035 0.5694 31 1 2.3601 -4.1142 -0.9362 32 1 3.1876 -3.3667 0.4586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = -75.235862 kcal Electronic energy + Delta-G solvation = -19473.443277 eV Core-core repulsion = 16100.490398 eV Total energy + Delta-G solvation = -3372.952879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26479 -39.39449 -38.02713 -36.98405 -36.09754 -36.07860 -34.16940 -31.48779 -30.12129 -27.49968 -25.24012 -23.61365 -23.21119 -21.46077 -20.15549 -19.26704 -18.69405 -17.12224 -16.92512 -16.89251 -16.26478 -16.01667 -15.51935 -14.79584 -14.77678 -14.09259 -13.93161 -13.81110 -13.46403 -13.31220 -13.21615 -13.14652 -12.92459 -12.64498 -12.42912 -12.28499 -12.13657 -11.98185 -11.90686 -11.59854 -11.25694 -11.06373 -10.66337 -10.47259 -10.11908 -9.61083 -8.25265 -6.38888 0.11999 1.10154 1.33133 1.41121 1.45002 1.53317 1.94210 2.31955 2.40081 2.98751 3.00763 3.28800 3.49173 3.87996 3.99220 4.11349 4.29165 4.44681 4.53429 4.60646 4.68026 4.71413 4.92970 5.18715 5.24544 5.47690 5.55034 5.77377 6.07708 6.56058 6.65309 7.09687 7.31950 7.43426 8.80801 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.032134 B = 0.003843 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.132420 B = 7284.711030 C = 7475.187865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.040 3.960 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.565 4.565 8 H 0.050 0.950 9 C 0.235 3.765 10 O -0.593 6.593 11 C -0.128 4.128 12 C 0.104 3.896 13 N -0.605 5.605 14 C 0.539 3.461 15 O -0.559 6.559 16 C -0.157 4.157 17 H 0.170 0.830 18 C -0.090 4.090 19 C 0.012 3.988 20 Cl -0.085 7.085 21 Cl -0.083 7.083 22 C 0.133 3.867 23 H 0.272 0.728 24 H 0.381 0.619 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.123 0.877 31 H 0.045 0.955 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 -14.015 7.390 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.161 4.161 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.603 4.603 8 H 0.068 0.932 9 C 0.195 3.805 10 O -0.402 6.402 11 C -0.167 4.167 12 C -0.018 4.018 13 N -0.338 5.338 14 C 0.327 3.673 15 O -0.438 6.438 16 C -0.179 4.179 17 H 0.187 0.813 18 C -0.127 4.127 19 C -0.040 4.040 20 Cl -0.058 7.058 21 Cl -0.056 7.056 22 C 0.010 3.990 23 H 0.082 0.918 24 H 0.232 0.768 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.186 0.814 30 H 0.141 0.859 31 H 0.064 0.936 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.825 -14.741 7.136 16.620 hybrid contribution 0.513 1.707 0.034 1.783 sum -2.312 -13.034 7.170 15.055 Atomic orbital electron populations 1.69682 1.06444 1.28431 1.49867 1.25530 0.95838 1.01747 0.93004 0.85596 0.78588 0.79359 0.78299 1.19930 1.20366 1.20320 1.21761 0.93410 0.91984 1.53150 0.93211 1.19577 0.87057 0.90388 0.83477 1.86097 1.51735 1.54628 1.47753 1.23093 1.01525 0.93179 0.98894 1.22559 0.83982 0.94690 1.00553 1.48658 1.21447 1.16900 1.46763 1.19574 0.85304 0.80759 0.81623 1.90795 1.22079 1.74960 1.55958 1.23068 1.02219 0.89854 1.02763 0.81283 1.24140 0.96155 0.92454 0.99991 1.26509 0.88329 1.01921 0.87221 1.98784 1.29637 1.95637 1.81741 1.98748 1.96182 1.87090 1.23536 1.21812 0.96453 0.88319 0.92438 0.91813 0.76824 0.92491 0.90272 0.88020 0.90451 0.81394 0.85868 0.93642 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.84 10.67 21.45 0.23 -44.61 16 2 C 0.04 2.02 5.28 84.66 0.45 2.47 16 3 Si 0.96 40.68 29.54 68.60 2.03 42.71 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.56 -29.33 8.21 25.60 0.21 -29.12 16 8 H 0.05 2.65 7.55 -2.91 -0.02 2.63 16 9 C 0.24 11.00 0.85 -10.35 -0.01 10.99 16 10 O -0.59 -28.97 13.07 -148.98 -1.95 -30.91 16 11 C -0.13 -5.13 5.57 31.99 0.18 -4.95 16 12 C 0.10 3.20 6.68 86.85 0.58 3.78 16 13 N -0.61 -21.72 3.33 -811.04 -2.70 -24.42 16 14 C 0.54 17.93 7.63 87.66 0.67 18.60 16 15 O -0.56 -22.38 14.03 -3.05 -0.04 -22.42 16 16 C -0.16 -3.52 5.37 -11.54 -0.06 -3.58 16 17 H 0.17 2.87 7.07 -2.38 -0.02 2.85 16 18 C -0.09 -1.48 9.92 30.62 0.30 -1.17 16 19 C 0.01 0.27 3.62 30.62 0.11 0.38 16 20 Cl -0.09 -2.44 26.13 -2.72 -0.07 -2.51 16 21 Cl -0.08 -1.59 29.29 -2.72 -0.08 -1.67 16 22 C 0.13 5.84 6.25 86.67 0.54 6.39 16 23 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 24 H 0.38 18.75 7.23 -74.06 -0.54 18.21 16 25 H 0.06 2.37 8.04 -2.38 -0.02 2.35 16 26 H 0.08 3.29 7.65 -2.39 -0.02 3.27 16 27 H 0.10 2.32 7.01 -2.39 -0.02 2.30 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 2.11 8.07 -2.39 -0.02 2.09 16 32 H 0.06 2.68 7.64 -2.39 -0.02 2.66 16 Total: -1.00 -59.62 299.74 1.01 -58.62 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.63 Total: 21.44 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 2.97 Total: 3.79 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: -2.47 Total: -69.03 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -1.99 Total: -53.33 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 17 Polarization: -4.03 SS G_CDS: -0.15 Total: -4.18 kcal Total: -59.62 1.01 -58.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.620 kcal (2) G-P(sol) polarization free energy of solvation -59.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds