Wall clock time and date at job start Tue Mar 31 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99415 * 3 2 1 5 5 H 1.48496 * 109.47475 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46755 * 119.99782 * 3 2 1 7 7 C 1.37880 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99910 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.78043 * 56.76515 * 9 7 2 11 11 C 1.55156 * 110.72267 * 293.51912 * 9 7 2 12 12 C 1.54908 * 101.58197 * 206.13524 * 11 9 7 13 13 N 1.47422 * 104.83357 * 37.01425 * 12 11 9 14 14 C 1.34775 * 125.65218 * 155.88832 * 13 12 11 15 15 O 1.21275 * 120.00034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99696 * 359.97438 * 14 13 12 17 17 H 1.09004 * 115.54879 * 34.41610 * 16 14 13 18 18 C 1.52997 * 117.49613 * 248.74366 * 16 14 13 19 19 C 1.52998 * 117.49640 * 180.08474 * 16 14 13 20 20 Cl 1.80306 * 117.49821 * 214.97851 * 19 16 14 21 21 Cl 1.80298 * 117.49941 * 359.97356 * 19 16 14 22 22 C 1.47031 * 108.70136 * 335.86884 * 13 12 11 23 23 H 0.96992 * 119.99999 * 0.02562 * 1 2 3 24 24 H 0.96700 * 113.99455 * 303.23672 * 10 9 7 25 25 H 1.08999 * 111.00338 * 324.21465 * 11 9 7 26 26 H 1.09003 * 110.99778 * 88.06247 * 11 9 7 27 27 H 1.09000 * 110.36459 * 155.84880 * 12 11 9 28 28 H 1.09001 * 110.36573 * 278.06223 * 12 11 9 29 29 H 1.08996 * 117.50087 * 0.02562 * 18 16 14 30 30 H 1.09006 * 117.49604 * 145.02578 * 18 16 14 31 31 H 1.08998 * 109.88059 * 241.64343 * 22 13 12 32 32 H 1.08994 * 109.87878 * 120.47623 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.3638 -2.5723 -1.1173 11 6 0.4745 -2.6847 1.3309 12 6 0.3792 -4.2282 1.4227 13 7 1.6650 -4.7179 0.8931 14 6 2.2303 -5.9074 1.1789 15 8 3.2957 -6.2072 0.6831 16 6 1.5385 -6.8651 2.1146 17 1 0.4495 -6.8642 2.0675 18 6 2.1865 -7.1123 3.4783 19 6 2.2322 -8.1984 2.4006 20 17 1.1857 -9.6479 2.6347 21 17 3.8143 -8.5040 1.5918 22 6 2.2282 -3.6937 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2708 -1.8442 -1.1639 25 1 1.0364 -2.2773 2.1713 26 1 -0.5166 -2.2350 1.2707 27 1 0.2528 -4.5394 2.4596 28 1 -0.4477 -4.5940 0.8140 29 1 3.1129 -6.5821 3.6989 30 1 1.5238 -7.2746 4.3285 31 1 2.3251 -4.0938 -1.0081 32 1 3.2027 -3.3753 0.3712 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:51 Heat of formation + Delta-G solvation = -75.511108 kcal Electronic energy + Delta-G solvation = -19475.528478 eV Core-core repulsion = 16102.563663 eV Total energy + Delta-G solvation = -3372.964815 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.037 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27548 -39.39778 -38.02936 -36.98481 -36.10259 -36.09619 -34.14127 -31.51365 -30.11242 -27.50078 -25.23703 -23.62012 -23.20322 -21.44720 -20.16118 -19.23677 -18.75760 -17.02858 -16.92914 -16.77100 -16.60715 -15.93325 -15.35393 -14.90310 -14.79235 -14.05904 -13.88819 -13.78679 -13.54585 -13.25735 -13.21308 -13.13458 -12.94669 -12.64389 -12.43520 -12.28396 -12.13904 -11.97559 -11.91952 -11.59343 -11.26706 -11.07017 -10.66000 -10.47411 -10.12183 -9.61084 -8.25200 -6.39069 0.11943 1.10140 1.32137 1.43474 1.45972 1.52489 1.95275 2.31541 2.40695 2.98651 3.00700 3.29273 3.48798 3.89276 4.02591 4.13286 4.29305 4.43198 4.53498 4.61363 4.68786 4.70019 4.93125 5.19420 5.25048 5.47333 5.54734 5.77536 6.06529 6.56103 6.65218 7.09569 7.32051 7.45599 8.80965 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.034688 B = 0.003836 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.994926 B = 7297.251781 C = 7611.164590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.039 3.961 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.234 3.766 10 O -0.596 6.596 11 C -0.128 4.128 12 C 0.103 3.897 13 N -0.605 5.605 14 C 0.539 3.461 15 O -0.559 6.559 16 C -0.158 4.158 17 H 0.169 0.831 18 C -0.089 4.089 19 C 0.012 3.988 20 Cl -0.083 7.083 21 Cl -0.085 7.085 22 C 0.132 3.868 23 H 0.273 0.727 24 H 0.383 0.617 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.169 0.831 31 H 0.041 0.959 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -12.720 10.015 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.602 4.602 8 H 0.070 0.930 9 C 0.194 3.806 10 O -0.406 6.406 11 C -0.167 4.167 12 C -0.019 4.019 13 N -0.338 5.338 14 C 0.328 3.672 15 O -0.437 6.437 16 C -0.179 4.179 17 H 0.186 0.814 18 C -0.127 4.127 19 C -0.040 4.040 20 Cl -0.056 7.056 21 Cl -0.058 7.058 22 C 0.009 3.991 23 H 0.083 0.917 24 H 0.234 0.766 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.186 0.814 31 H 0.059 0.941 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.903 -13.520 9.595 16.603 hybrid contribution 0.198 1.430 -0.513 1.532 sum -0.705 -12.090 9.082 15.138 Atomic orbital electron populations 1.69612 1.06543 1.28573 1.49967 1.25554 0.95826 1.01850 0.92974 0.85624 0.78525 0.78964 0.78581 1.20503 1.20273 1.19699 1.21744 0.93494 0.91865 1.53144 0.92952 1.19598 0.86561 0.90499 0.83925 1.86088 1.51411 1.53003 1.50093 1.23094 1.01515 0.93080 0.98965 1.22551 0.84385 0.94928 1.00013 1.48575 1.23148 1.15921 1.46117 1.19579 0.84780 0.80808 0.82056 1.90791 1.23109 1.75587 1.54256 1.23055 1.02508 0.92851 0.99517 0.81396 1.24152 1.04320 0.92706 0.91498 1.26512 0.86726 0.84412 1.06347 1.98748 1.66962 1.43159 1.96719 1.98784 1.29366 1.96079 1.81561 1.21776 0.96909 0.87965 0.92456 0.91738 0.76602 0.92016 0.90571 0.87559 0.91052 0.85737 0.81351 0.94080 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.04 10.70 21.45 0.23 -44.81 16 2 C 0.04 1.96 5.28 84.65 0.45 2.40 16 3 Si 0.96 40.35 29.54 68.60 2.03 42.38 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.56 -29.10 8.21 25.60 0.21 -28.89 16 8 H 0.05 2.74 7.53 -2.91 -0.02 2.72 16 9 C 0.23 11.00 0.86 -10.35 -0.01 10.99 16 10 O -0.60 -29.69 13.09 -148.98 -1.95 -31.64 16 11 C -0.13 -5.08 5.67 31.99 0.18 -4.89 16 12 C 0.10 3.18 6.47 86.86 0.56 3.74 16 13 N -0.61 -21.76 3.33 -811.79 -2.70 -24.46 16 14 C 0.54 17.95 7.63 87.66 0.67 18.62 16 15 O -0.56 -22.36 14.02 -3.01 -0.04 -22.40 16 16 C -0.16 -3.52 5.10 -11.54 -0.06 -3.58 16 17 H 0.17 2.89 7.78 -2.38 -0.02 2.87 16 18 C -0.09 -1.44 9.92 30.62 0.30 -1.14 16 19 C 0.01 0.27 3.62 30.62 0.11 0.38 16 20 Cl -0.08 -1.60 29.29 -2.72 -0.08 -1.68 16 21 Cl -0.09 -2.43 26.13 -2.72 -0.07 -2.51 16 22 C 0.13 5.82 6.22 86.73 0.54 6.36 16 23 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 24 H 0.38 19.25 6.99 -74.06 -0.52 18.74 16 25 H 0.06 2.50 8.04 -2.39 -0.02 2.48 16 26 H 0.08 3.16 7.77 -2.39 -0.02 3.15 16 27 H 0.11 2.37 7.67 -2.39 -0.02 2.35 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.17 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 32 H 0.06 2.78 7.63 -2.39 -0.02 2.76 16 Total: -1.00 -59.71 300.61 1.01 -58.70 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.64 Total: 22.42 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 2.96 Total: 4.00 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -2.47 Total: -69.27 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -1.99 Total: -54.04 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 17 Polarization: -4.03 SS G_CDS: -0.15 Total: -4.18 kcal Total: -59.71 1.01 -58.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.812 kcal (2) G-P(sol) polarization free energy of solvation -59.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds