Wall clock time and date at job start Tue Mar 31 2020 07:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47037 * 299.99407 * 3 2 1 6 6 H 1.48500 * 109.47407 * 60.00143 * 3 2 1 7 7 C 1.37874 * 119.99304 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00651 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47006 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00154 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99671 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00060 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47241 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.47407 * 180.02562 * 15 14 13 17 17 C 1.52989 * 109.47407 * 179.97438 * 16 15 14 18 18 H 1.09004 * 115.56709 * 29.30779 * 17 16 15 19 19 C 1.53000 * 117.50008 * 243.62046 * 17 16 15 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 17 16 21 21 Cl 1.80302 * 117.49615 * 252.51173 * 20 19 17 22 22 Cl 1.80299 * 117.50178 * 107.48433 * 20 19 17 23 23 H 0.97006 * 119.99672 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47607 * 59.99228 * 9 7 2 25 25 H 1.09003 * 109.47154 * 299.99506 * 9 7 2 26 26 H 1.08996 * 109.47252 * 59.99721 * 10 9 7 27 27 H 1.09000 * 109.46942 * 299.99514 * 10 9 7 28 28 H 0.96999 * 120.00402 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.46923 * 59.99728 * 14 13 11 30 30 H 1.09002 * 109.46898 * 300.00662 * 14 13 11 31 31 H 1.09004 * 109.47546 * 59.99911 * 15 14 13 32 32 H 1.09000 * 109.47137 * 299.99761 * 15 14 13 33 33 H 1.09004 * 109.46886 * 59.99450 * 16 15 14 34 34 H 1.09002 * 109.46769 * 300.00487 * 16 15 14 35 35 H 1.09002 * 117.49696 * 0.02562 * 19 17 16 36 36 H 1.09002 * 117.50343 * 145.02258 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2786 -4.9672 0.0021 13 7 2.1653 -6.1344 0.0008 14 6 1.4328 -7.4032 0.0008 15 6 2.4269 -8.5660 0.0009 16 6 1.6619 -9.8911 0.0003 17 6 2.6561 -11.0540 -0.0002 18 1 3.6135 -10.8546 0.4812 19 6 2.6568 -11.9823 -1.2164 20 6 2.0875 -12.4696 0.1174 21 17 3.0523 -13.6801 1.0419 22 17 0.2971 -12.6395 0.2462 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8895 28 1 3.1353 -6.1345 0.0004 29 1 0.8058 -7.4607 -0.8890 30 1 0.8064 -7.4610 0.8910 31 1 3.0536 -8.5083 0.8909 32 1 3.0536 -8.5084 -0.8890 33 1 1.0355 -9.9486 -0.8899 34 1 1.0349 -9.9490 0.8901 35 1 1.9493 -11.7642 -2.0164 36 1 3.6146 -12.3936 -1.5351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844959573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:37 Heat of formation + Delta-G solvation = -54.369181 kcal Electronic energy + Delta-G solvation = -17875.756149 eV Core-core repulsion = 14639.541211 eV Total energy + Delta-G solvation = -3236.214938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.24627 -38.74127 -36.49350 -36.34745 -35.15413 -33.43544 -32.26969 -30.85751 -27.16299 -25.27029 -22.92532 -22.23383 -21.46786 -21.04475 -19.54150 -17.01731 -16.78274 -16.02812 -15.86478 -15.54629 -15.23395 -14.69517 -14.40153 -13.81131 -13.45309 -13.19535 -12.97219 -12.46100 -12.36765 -12.32523 -12.08975 -11.96303 -11.62301 -11.50882 -11.30649 -11.24168 -11.14380 -10.93859 -10.64474 -10.57577 -10.19258 -9.95246 -9.65834 -9.16430 -8.99410 -8.77602 -8.31729 -5.95700 -4.00009 0.72683 1.71773 2.67090 3.27639 3.32760 3.39328 3.42389 3.46638 3.68734 3.82681 4.35771 4.47836 4.55647 4.77366 4.90023 4.98964 5.10167 5.27530 5.39249 5.40048 5.42833 5.57510 5.74984 5.91190 6.02186 6.24045 6.25522 6.73400 6.90723 7.75356 7.87280 7.89981 8.08037 8.39490 8.80008 9.09006 9.63508 11.15297 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.001985 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.074161 B =14105.656970 C =14459.632004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.746 5.746 14 C 0.118 3.882 15 C -0.126 4.126 16 C -0.093 4.093 17 C -0.109 4.109 18 H 0.130 0.870 19 C -0.143 4.143 20 C -0.005 4.005 21 Cl -0.098 7.098 22 Cl -0.090 7.090 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.397 0.603 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.409 -28.587 -1.039 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.410 6.410 13 N -0.400 5.400 14 C -0.006 4.006 15 C -0.164 4.164 16 C -0.131 4.131 17 C -0.128 4.128 18 H 0.148 0.852 19 C -0.180 4.180 20 C -0.056 4.056 21 Cl -0.071 7.071 22 Cl -0.063 7.063 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.230 0.770 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.271 -28.576 -0.950 29.502 hybrid contribution 0.849 0.603 0.134 1.050 sum 8.120 -27.973 -0.816 29.139 Atomic orbital electron populations 1.70016 1.06053 1.26455 1.50307 1.25040 0.94841 0.99268 0.95353 0.86529 0.79983 0.83825 0.77574 1.19760 1.21028 1.21028 1.21264 0.92963 0.91018 1.51206 0.92550 1.18906 0.93208 0.89422 0.98621 1.21863 1.00700 0.92001 1.02444 1.21569 0.88657 0.85700 0.74407 1.90672 1.14521 1.87677 1.48172 1.46197 1.10012 1.05653 1.78162 1.21216 0.94532 0.82578 1.02281 1.21748 0.98479 0.93086 1.03100 1.21238 0.96536 0.91250 1.04086 1.23355 1.01388 0.88410 0.99667 0.85172 1.24091 1.03614 0.99459 0.90864 1.26861 0.81854 0.94595 1.02315 1.98756 1.71203 1.60568 1.76608 1.98762 1.11318 1.97882 1.98316 0.93013 0.95841 0.95828 0.90273 0.90271 0.76971 0.91840 0.91811 0.90935 0.90917 0.90377 0.89908 0.86006 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.51 9.70 7.83 -10.98 -0.09 9.61 16 12 O -0.54 -12.70 15.98 5.55 0.09 -12.61 16 13 N -0.75 -9.92 5.56 -60.29 -0.33 -10.26 16 14 C 0.12 1.33 5.67 -4.05 -0.02 1.31 16 15 C -0.13 -0.87 5.29 -26.73 -0.14 -1.01 16 16 C -0.09 -0.58 4.59 -26.73 -0.12 -0.71 16 17 C -0.11 -0.58 5.58 -90.62 -0.51 -1.08 16 18 H 0.13 0.58 8.08 -51.93 -0.42 0.17 16 19 C -0.14 -0.65 9.86 -26.73 -0.26 -0.92 16 20 C 0.00 -0.03 3.62 -26.73 -0.10 -0.13 16 21 Cl -0.10 -0.73 29.29 -51.86 -1.52 -2.25 16 22 Cl -0.09 -0.72 28.23 -51.86 -1.46 -2.18 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 34 H 0.08 0.59 8.02 -51.93 -0.42 0.17 16 35 H 0.12 0.50 8.03 -51.93 -0.42 0.08 16 36 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -34.30 339.82 -9.67 -43.97 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.35 Total: -3.08 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.93 Total: -8.57 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.40 Total: -37.05 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -2.98 Total: -4.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.30 -9.67 -43.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844959573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.401 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds