Wall clock time and date at job start Tue Mar 31 2020 07:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00069 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47037 * 299.99407 * 3 2 1 6 6 H 1.48500 * 109.47407 * 60.00143 * 3 2 1 7 7 C 1.37874 * 119.99304 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99764 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00651 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47006 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00154 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99671 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00060 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47241 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.47407 * 180.02562 * 15 14 13 17 17 C 1.52989 * 109.47407 * 179.97438 * 16 15 14 18 18 H 1.09004 * 115.56709 * 29.30779 * 17 16 15 19 19 C 1.53000 * 117.50008 * 243.62046 * 17 16 15 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 17 16 21 21 Cl 1.80302 * 117.49615 * 252.51173 * 20 19 17 22 22 Cl 1.80299 * 117.50178 * 107.48433 * 20 19 17 23 23 H 0.97006 * 119.99672 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47607 * 59.99228 * 9 7 2 25 25 H 1.09003 * 109.47154 * 299.99506 * 9 7 2 26 26 H 1.08996 * 109.47252 * 59.99721 * 10 9 7 27 27 H 1.09000 * 109.46942 * 299.99514 * 10 9 7 28 28 H 0.96999 * 120.00402 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.46923 * 59.99728 * 14 13 11 30 30 H 1.09002 * 109.46898 * 300.00662 * 14 13 11 31 31 H 1.09004 * 109.47546 * 59.99911 * 15 14 13 32 32 H 1.09000 * 109.47137 * 299.99761 * 15 14 13 33 33 H 1.09004 * 109.46886 * 59.99450 * 16 15 14 34 34 H 1.09002 * 109.46769 * 300.00487 * 16 15 14 35 35 H 1.09002 * 117.49696 * 0.02562 * 19 17 16 36 36 H 1.09002 * 117.50343 * 145.02258 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2786 -4.9672 0.0021 13 7 2.1653 -6.1344 0.0008 14 6 1.4328 -7.4032 0.0008 15 6 2.4269 -8.5660 0.0009 16 6 1.6619 -9.8911 0.0003 17 6 2.6561 -11.0540 -0.0002 18 1 3.6135 -10.8546 0.4812 19 6 2.6568 -11.9823 -1.2164 20 6 2.0875 -12.4696 0.1174 21 17 3.0523 -13.6801 1.0419 22 17 0.2971 -12.6395 0.2462 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6045 -0.8895 28 1 3.1353 -6.1345 0.0004 29 1 0.8058 -7.4607 -0.8890 30 1 0.8064 -7.4610 0.8910 31 1 3.0536 -8.5083 0.8909 32 1 3.0536 -8.5084 -0.8890 33 1 1.0355 -9.9486 -0.8899 34 1 1.0349 -9.9490 0.8901 35 1 1.9493 -11.7642 -2.0164 36 1 3.6146 -12.3936 -1.5351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844959573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:36 Heat of formation + Delta-G solvation = -76.198735 kcal Electronic energy + Delta-G solvation = -17876.702750 eV Core-core repulsion = 14639.541211 eV Total energy + Delta-G solvation = -3237.161538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64791 -39.30628 -37.08341 -36.97036 -36.12111 -35.52106 -33.41451 -32.60950 -28.47062 -26.84618 -23.80707 -23.23186 -22.60000 -21.67970 -20.98625 -18.78915 -17.53901 -17.30888 -16.93837 -16.82938 -16.39243 -16.00524 -15.91314 -14.73728 -14.53225 -14.27970 -14.17253 -13.80069 -13.48454 -13.22531 -12.96947 -12.90825 -12.84485 -12.72834 -12.42328 -12.20411 -12.09006 -11.92276 -11.89163 -11.85582 -11.61832 -11.27140 -11.12621 -10.79005 -10.59516 -10.57202 -10.02066 -8.17265 -6.31260 0.23684 1.21337 1.43111 1.44609 1.57898 1.75381 2.21488 2.34021 2.47094 3.15787 3.16286 3.40291 3.78665 4.06146 4.10373 4.21267 4.38074 4.48754 4.55938 4.58572 4.69293 4.72304 4.77564 4.85560 5.05427 5.13514 5.26089 5.35224 5.49536 5.57438 5.64943 5.87078 6.18849 6.67671 6.88009 7.38568 7.41154 8.95674 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.001985 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.074161 B =14105.656970 C =14459.632004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.010 4.010 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.508 3.492 12 O -0.594 6.594 13 N -0.718 5.718 14 C 0.114 3.886 15 C -0.111 4.111 16 C -0.091 4.091 17 C -0.101 4.101 18 H 0.145 0.855 19 C -0.127 4.127 20 C -0.020 4.020 21 Cl -0.109 7.109 22 Cl -0.110 7.110 23 H 0.262 0.738 24 H -0.019 1.019 25 H -0.019 1.019 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.418 0.582 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.128 0.872 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.707 -28.993 -1.451 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.159 4.159 11 C 0.296 3.704 12 O -0.474 6.474 13 N -0.371 5.371 14 C -0.010 4.010 15 C -0.148 4.148 16 C -0.129 4.129 17 C -0.120 4.120 18 H 0.163 0.837 19 C -0.165 4.165 20 C -0.071 4.071 21 Cl -0.082 7.082 22 Cl -0.083 7.083 23 H 0.071 0.929 24 H 0.000 1.000 25 H -0.001 1.001 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.256 0.744 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.146 0.854 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.645 -29.036 -1.362 30.956 hybrid contribution -0.196 0.661 0.260 0.737 sum 10.449 -28.374 -1.103 30.257 Atomic orbital electron populations 1.70196 1.08349 1.27713 1.51638 1.26175 0.95755 1.04068 0.94731 0.85249 0.79339 0.78004 0.77491 1.17471 1.20676 1.20723 1.21763 0.94059 0.91574 1.50486 0.90447 1.18707 0.93802 0.92662 0.94606 1.21635 0.99250 0.90109 1.04934 1.21360 0.87786 0.87019 0.74229 1.90658 1.16919 1.88508 1.51303 1.45889 1.11087 1.04735 1.75437 1.21387 0.95559 0.82922 1.01088 1.21648 0.97422 0.90991 1.04772 1.21176 0.96686 0.91444 1.03633 1.23355 1.01312 0.87220 1.00133 0.83732 1.24240 1.04207 0.97856 0.90177 1.27108 0.80744 0.95194 1.04039 1.98753 1.71261 1.61120 1.77052 1.98759 1.13196 1.97961 1.98414 0.92900 1.00043 1.00101 0.87691 0.87599 0.74449 0.92985 0.93322 0.89437 0.88981 0.90484 0.90996 0.85379 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.29 21.45 0.28 -59.60 16 2 C -0.01 -0.59 5.46 84.65 0.46 -0.13 16 3 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 4 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.23 4.26 29.85 0.13 2.35 16 10 C -0.12 -4.70 5.64 29.85 0.17 -4.54 16 11 C 0.51 19.28 7.83 87.66 0.69 19.96 16 12 O -0.59 -29.34 15.98 -3.04 -0.05 -29.39 16 13 N -0.72 -17.69 5.56 -463.06 -2.57 -20.27 16 14 C 0.11 2.42 5.67 86.38 0.49 2.91 16 15 C -0.11 -1.19 5.29 30.59 0.16 -1.03 16 16 C -0.09 -0.96 4.59 30.59 0.14 -0.82 16 17 C -0.10 -0.81 5.58 -10.80 -0.06 -0.87 16 18 H 0.15 0.78 8.08 -2.38 -0.02 0.76 16 19 C -0.13 -0.83 9.86 30.59 0.30 -0.53 16 20 C -0.02 -0.23 3.62 30.60 0.11 -0.12 16 21 Cl -0.11 -1.47 29.29 -2.72 -0.08 -1.55 16 22 Cl -0.11 -1.71 28.23 -2.72 -0.08 -1.79 16 23 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 24 H -0.02 -1.20 8.10 -2.38 -0.02 -1.21 16 25 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 26 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.42 6.84 8.47 -92.71 -0.79 6.06 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.85 7.87 -2.39 -0.02 0.83 16 34 H 0.07 0.95 8.02 -2.39 -0.02 0.93 16 35 H 0.13 0.71 8.03 -2.39 -0.02 0.69 16 36 H 0.14 0.47 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -78.61 339.82 2.65 -75.97 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 0.29 Total: 3.68 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 2.82 Total: -13.31 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.29 Total: -79.87 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.16 Total: -3.34 kcal Total: -78.61 2.65 -75.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844959573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.232 kcal (2) G-P(sol) polarization free energy of solvation -78.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds