Wall clock time and date at job start Tue Mar 31 2020 06:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46548 * 202.67973 * 3 2 1 5 5 C 1.36925 * 120.00255 * 85.69066 * 4 3 2 6 6 H 1.07998 * 120.00200 * 228.56089 * 5 4 3 7 7 C 1.38962 * 119.99789 * 48.56135 * 5 4 3 8 8 N 1.31435 * 119.99944 * 357.10036 * 7 5 4 9 9 Si 1.86799 * 119.99854 * 177.10361 * 7 5 4 10 10 H 1.48496 * 109.47404 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46892 * 119.99707 * 9 7 5 12 12 H 1.48502 * 109.47046 * 239.99486 * 9 7 5 13 13 C 1.34786 * 120.00014 * 265.69021 * 4 3 2 14 14 O 1.21813 * 119.99608 * 5.67984 * 13 4 3 15 15 C 1.41581 * 119.99913 * 185.67935 * 13 4 3 16 16 S 1.75660 * 125.11069 * 6.15821 * 15 13 4 17 17 C 1.75549 * 91.21669 * 179.97438 * 16 15 13 18 18 C 1.34241 * 110.69947 * 359.96998 * 17 16 15 19 19 C 1.37284 * 125.10269 * 185.84970 * 15 13 4 20 20 O 1.37647 * 124.48841 * 0.24962 * 19 15 13 21 21 C 1.43381 * 114.50111 * 163.26041 * 20 19 15 22 22 C 1.53230 * 109.12685 * 46.52572 * 21 20 19 23 23 O 1.38240 * 124.14557 * 180.20704 * 18 17 16 24 24 H 4.40634 * 5.51411 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47274 * 322.67884 * 3 2 1 26 26 H 1.08995 * 109.47171 * 82.68219 * 3 2 1 27 27 H 0.96994 * 119.99919 * 180.02562 * 8 7 5 28 28 H 1.07999 * 124.65041 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.53013 * 166.41540 * 21 20 19 30 30 H 1.08990 * 109.53166 * 286.55983 * 21 20 19 31 31 H 1.09010 * 109.52071 * 57.64316 * 22 21 20 32 32 H 1.08995 * 109.52478 * 177.76531 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2753 0.5326 5 6 3.2777 1.4425 1.8839 6 1 2.8755 2.3217 2.3652 7 6 3.9414 0.4809 2.6361 8 7 4.3809 -0.6159 2.0603 9 14 4.2090 0.7469 4.4656 10 1 3.6241 2.0515 4.8669 11 1 3.5512 -0.3459 5.2261 12 1 5.6650 0.7467 4.7581 13 6 3.4405 2.2836 -0.3077 14 8 3.2154 2.1728 -1.4997 15 6 4.0243 3.4713 0.1952 16 16 4.5459 3.7167 1.8546 17 6 5.0760 5.3492 1.4860 18 6 4.8549 5.6395 0.1942 19 6 4.2733 4.6022 -0.5422 20 8 3.9829 4.7395 -1.8807 21 6 3.9727 6.0939 -2.3510 22 6 5.2196 6.8160 -1.8295 23 8 5.1714 6.8497 -0.3943 24 1 -1.0502 -0.0003 -0.0003 25 1 3.0097 -0.8164 0.6230 26 1 3.0094 -0.1301 -1.0192 27 1 4.8438 -1.2872 2.5853 28 1 5.5199 6.0266 2.2004 29 1 3.9768 6.1012 -3.4410 30 1 3.0785 6.5995 -1.9867 31 1 6.1126 6.2847 -2.1588 32 1 5.2387 7.8350 -2.2158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847018381.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:46 Heat of formation + Delta-G solvation = -4.625135 kcal Electronic energy + Delta-G solvation = -21264.233828 eV Core-core repulsion = 17898.819416 eV Total energy + Delta-G solvation = -3365.414413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42775 -38.71267 -36.47557 -35.40087 -34.61154 -32.59202 -31.50600 -29.50014 -29.10968 -26.68918 -25.22331 -23.36519 -23.21945 -20.18864 -18.89594 -18.60871 -17.83146 -16.80221 -16.36909 -16.21846 -15.52682 -15.02787 -14.74893 -14.44729 -14.23283 -14.09235 -13.86408 -13.67709 -12.88593 -12.71248 -12.44752 -12.05349 -12.03019 -11.61975 -11.44401 -11.25415 -10.79986 -10.55139 -10.35478 -10.30566 -10.23298 -9.69561 -9.38969 -9.07364 -8.67778 -7.89287 -7.70762 -7.17360 -6.66715 -4.57821 1.24283 2.29003 2.56927 2.85747 2.98884 3.05569 3.08993 3.51095 3.74776 3.76679 3.87133 3.96556 4.29811 4.51942 4.74144 4.81807 5.04684 5.06812 5.21520 5.40057 5.49642 5.66019 5.95056 6.12940 6.29436 6.61029 6.76622 6.80821 6.93969 7.11507 7.22830 7.65536 7.70852 8.06442 8.49906 8.71087 9.23204 9.68930 10.27316 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.007081 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.528707 B = 3953.081716 C = 5223.783223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.148 4.148 3 C 0.201 3.799 4 N -0.442 5.442 5 C -0.333 4.333 6 H 0.103 0.897 7 C 0.064 3.936 8 N -0.842 5.842 9 Si 0.905 3.095 10 H -0.253 1.253 11 H -0.271 1.271 12 H -0.268 1.268 13 C 0.552 3.448 14 O -0.574 6.574 15 C -0.233 4.233 16 S 0.299 5.701 17 C -0.302 4.302 18 C 0.021 3.979 19 C 0.083 3.917 20 O -0.265 6.265 21 C 0.015 3.985 22 C 0.020 3.980 23 O -0.305 6.305 24 H 0.206 0.794 25 H 0.141 0.859 26 H 0.082 0.918 27 H 0.280 0.720 28 H 0.158 0.842 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 8.117 -0.145 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.149 4.149 3 C 0.079 3.921 4 N -0.162 5.162 5 C -0.469 4.469 6 H 0.120 0.880 7 C -0.147 4.147 8 N -0.476 5.476 9 Si 0.729 3.271 10 H -0.177 1.177 11 H -0.197 1.197 12 H -0.193 1.193 13 C 0.342 3.658 14 O -0.459 6.459 15 C -0.354 4.354 16 S 0.572 5.428 17 C -0.438 4.438 18 C -0.035 4.035 19 C 0.022 3.978 20 O -0.179 6.179 21 C -0.062 4.062 22 C -0.056 4.056 23 O -0.222 6.222 24 H 0.223 0.777 25 H 0.158 0.842 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.175 0.825 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.409 7.114 0.578 7.275 hybrid contribution -0.076 1.141 -0.591 1.287 sum 1.333 8.255 -0.013 8.362 Atomic orbital electron populations 1.24577 0.95627 1.02943 1.04891 1.24363 0.95471 0.98094 0.96975 1.18842 0.81765 0.90786 1.00754 1.43199 1.56493 1.10958 1.05569 1.19521 1.36385 1.08168 0.82851 0.87977 1.25728 0.93203 0.94807 1.00978 1.69560 1.33070 1.07449 1.37492 0.86136 0.79384 0.80123 0.81468 1.17678 1.19665 1.19284 1.16006 0.80636 0.83220 0.85895 1.90743 1.57929 1.81819 1.15362 1.22630 1.15338 0.99090 0.98323 1.85553 1.53449 0.99871 1.03877 1.26718 1.10862 1.08301 0.97903 1.18191 1.05190 0.86915 0.93193 1.18757 1.00351 0.93855 0.84812 1.87161 1.86459 1.24993 1.19263 1.23537 0.98092 0.83445 1.01144 1.23500 0.98540 1.02894 0.80694 1.87034 1.87778 1.27864 1.19497 0.77680 0.84180 0.90007 0.90858 0.82467 0.86720 0.91193 0.91026 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.30 19.25 29.55 0.57 -4.73 16 2 C -0.15 -3.41 13.65 -37.12 -0.51 -3.92 16 3 C 0.20 4.87 5.54 -6.83 -0.04 4.83 16 4 N -0.44 -11.21 2.46 -121.19 -0.30 -11.51 16 5 C -0.33 -7.98 6.28 -15.01 -0.09 -8.07 16 6 H 0.10 2.38 6.00 -40.01 -0.24 2.14 16 7 C 0.06 1.48 5.39 -17.45 -0.09 1.39 16 8 N -0.84 -20.16 10.94 55.50 0.61 -19.55 16 9 Si 0.91 17.49 29.55 -169.99 -5.02 12.47 16 10 H -0.25 -4.66 7.11 56.52 0.40 -4.26 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 12 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 13 C 0.55 14.43 7.42 -14.98 -0.11 14.32 16 14 O -0.57 -16.27 15.45 -11.72 -0.18 -16.46 16 15 C -0.23 -5.46 6.11 -38.65 -0.24 -5.70 16 16 S 0.30 5.92 18.57 -107.50 -2.00 3.92 16 17 C -0.30 -5.45 11.17 29.32 0.33 -5.12 16 18 C 0.02 0.40 6.54 -40.38 -0.26 0.13 16 19 C 0.08 1.82 6.58 -39.32 -0.26 1.56 16 20 O -0.27 -5.61 9.62 -49.00 -0.47 -6.08 16 21 C 0.01 0.21 7.13 37.28 0.27 0.48 16 22 C 0.02 0.27 7.15 37.28 0.27 0.54 16 23 O -0.31 -5.23 10.78 -35.41 -0.38 -5.61 16 24 H 0.21 3.20 7.80 -54.08 -0.42 2.77 16 25 H 0.14 3.44 5.39 -51.93 -0.28 3.16 16 26 H 0.08 2.00 7.38 -51.93 -0.38 1.62 16 27 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 28 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 29 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 296.39 15.07 4.47 4.47 Total: -1.00 -30.34 296.39 -6.03 -36.36 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.57 Total: 6.27 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.17 Total: -4.29 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.31 Total: -31.06 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.03 Total: -28.14 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.02 Total: 12.47 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -2.00 Total: 3.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.34 -6.03 -36.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847018381.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.735 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds