Wall clock time and date at job start Tue Mar 31 2020 06:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46548 * 202.67973 * 3 2 1 5 5 C 1.36925 * 120.00255 * 85.69066 * 4 3 2 6 6 H 1.07998 * 120.00200 * 228.56089 * 5 4 3 7 7 C 1.38962 * 119.99789 * 48.56135 * 5 4 3 8 8 N 1.31435 * 119.99944 * 357.10036 * 7 5 4 9 9 Si 1.86799 * 119.99854 * 177.10361 * 7 5 4 10 10 H 1.48496 * 109.47404 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46892 * 119.99707 * 9 7 5 12 12 H 1.48502 * 109.47046 * 239.99486 * 9 7 5 13 13 C 1.34786 * 120.00014 * 265.69021 * 4 3 2 14 14 O 1.21813 * 119.99608 * 5.67984 * 13 4 3 15 15 C 1.41581 * 119.99913 * 185.67935 * 13 4 3 16 16 S 1.75660 * 125.11069 * 6.15821 * 15 13 4 17 17 C 1.75549 * 91.21669 * 179.97438 * 16 15 13 18 18 C 1.34241 * 110.69947 * 359.96998 * 17 16 15 19 19 C 1.37284 * 125.10269 * 185.84970 * 15 13 4 20 20 O 1.37647 * 124.48841 * 0.24962 * 19 15 13 21 21 C 1.43381 * 114.50111 * 163.26041 * 20 19 15 22 22 C 1.53230 * 109.12685 * 46.52572 * 21 20 19 23 23 O 1.38240 * 124.14557 * 180.20704 * 18 17 16 24 24 H 4.40634 * 5.51411 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47274 * 322.67884 * 3 2 1 26 26 H 1.08995 * 109.47171 * 82.68219 * 3 2 1 27 27 H 0.96994 * 119.99919 * 180.02562 * 8 7 5 28 28 H 1.07999 * 124.65041 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.53013 * 166.41540 * 21 20 19 30 30 H 1.08990 * 109.53166 * 286.55983 * 21 20 19 31 31 H 1.09010 * 109.52071 * 57.64316 * 22 21 20 32 32 H 1.08995 * 109.52478 * 177.76531 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.2753 0.5326 5 6 3.2777 1.4425 1.8839 6 1 2.8755 2.3217 2.3652 7 6 3.9414 0.4809 2.6361 8 7 4.3809 -0.6159 2.0603 9 14 4.2090 0.7469 4.4656 10 1 3.6241 2.0515 4.8669 11 1 3.5512 -0.3459 5.2261 12 1 5.6650 0.7467 4.7581 13 6 3.4405 2.2836 -0.3077 14 8 3.2154 2.1728 -1.4997 15 6 4.0243 3.4713 0.1952 16 16 4.5459 3.7167 1.8546 17 6 5.0760 5.3492 1.4860 18 6 4.8549 5.6395 0.1942 19 6 4.2733 4.6022 -0.5422 20 8 3.9829 4.7395 -1.8807 21 6 3.9727 6.0939 -2.3510 22 6 5.2196 6.8160 -1.8295 23 8 5.1714 6.8497 -0.3943 24 1 -1.0502 -0.0003 -0.0003 25 1 3.0097 -0.8164 0.6230 26 1 3.0094 -0.1301 -1.0192 27 1 4.8438 -1.2872 2.5853 28 1 5.5199 6.0266 2.2004 29 1 3.9768 6.1012 -3.4410 30 1 3.0785 6.5995 -1.9867 31 1 6.1126 6.2847 -2.1588 32 1 5.2387 7.8350 -2.2158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847018381.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:46 Heat of formation + Delta-G solvation = -23.952170 kcal Electronic energy + Delta-G solvation = -21265.071912 eV Core-core repulsion = 17898.819416 eV Total energy + Delta-G solvation = -3366.252496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.86064 -40.54782 -37.90068 -37.14322 -36.22895 -34.33891 -33.31700 -30.84567 -30.60005 -28.43707 -27.00024 -24.96039 -24.51493 -21.87096 -20.51933 -20.13304 -19.42867 -18.37935 -17.97670 -17.77998 -17.04326 -16.67046 -16.40643 -15.95670 -15.77543 -15.62464 -15.30467 -15.20239 -14.46396 -14.38150 -13.96441 -13.85274 -13.52218 -13.30623 -13.12510 -12.88919 -12.06376 -11.99912 -11.80249 -11.79122 -11.63283 -11.43587 -11.11676 -10.87360 -10.57246 -9.71644 -9.33286 -8.71676 -8.41628 -6.41494 -0.37460 0.72171 1.08276 1.31529 1.47231 1.48124 1.61236 1.79379 2.03041 2.24859 2.34284 2.49117 2.64930 2.97461 3.07787 3.38254 3.72829 3.76991 3.98278 4.09671 4.42535 4.48480 4.53744 4.60143 4.70775 4.84609 5.09788 5.17201 5.19271 5.35468 5.78242 5.87632 6.21802 6.25395 6.78742 6.90965 7.35608 7.82643 8.55279 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.007081 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.528707 B = 3953.081716 C = 5223.783223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.216 4.216 3 C 0.203 3.797 4 N -0.446 5.446 5 C -0.355 4.355 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.874 5.874 9 Si 0.958 3.042 10 H -0.235 1.235 11 H -0.270 1.270 12 H -0.260 1.260 13 C 0.536 3.464 14 O -0.618 6.618 15 C -0.291 4.291 16 S 0.319 5.681 17 C -0.274 4.274 18 C 0.010 3.990 19 C 0.088 3.912 20 O -0.302 6.302 21 C 0.003 3.997 22 C 0.019 3.981 23 O -0.308 6.308 24 H 0.255 0.745 25 H 0.133 0.867 26 H 0.061 0.939 27 H 0.285 0.715 28 H 0.196 0.804 29 H 0.148 0.852 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 10.580 1.253 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.218 4.218 3 C 0.081 3.919 4 N -0.165 5.165 5 C -0.489 4.489 6 H 0.125 0.875 7 C -0.177 4.177 8 N -0.508 5.508 9 Si 0.778 3.222 10 H -0.158 1.158 11 H -0.195 1.195 12 H -0.185 1.185 13 C 0.329 3.671 14 O -0.507 6.507 15 C -0.411 4.411 16 S 0.591 5.409 17 C -0.410 4.410 18 C -0.045 4.045 19 C 0.025 3.975 20 O -0.216 6.216 21 C -0.072 4.072 22 C -0.057 4.057 23 O -0.224 6.224 24 H 0.271 0.729 25 H 0.150 0.850 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.213 0.787 29 H 0.166 0.834 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.369 9.553 1.980 9.851 hybrid contribution -0.102 0.510 -1.161 1.273 sum 1.266 10.063 0.819 10.175 Atomic orbital electron populations 1.25618 0.96469 0.99680 1.01455 1.24442 0.96029 1.01161 1.00122 1.18622 0.83301 0.90640 0.99334 1.43403 1.55984 1.10849 1.06254 1.19768 1.37624 1.09182 0.82310 0.87510 1.26486 0.92336 0.94036 1.04810 1.69648 1.33722 1.08256 1.39193 0.85358 0.79713 0.80847 0.76321 1.15779 1.19491 1.18481 1.16470 0.80644 0.84370 0.85593 1.90669 1.60114 1.82954 1.16922 1.22632 1.18382 0.99093 1.00956 1.85093 1.53358 1.00678 1.01805 1.26892 1.08716 1.07292 0.98103 1.18186 1.05538 0.87311 0.93509 1.19107 0.99113 0.93957 0.85291 1.87106 1.86248 1.29100 1.19135 1.24002 0.99240 0.80855 1.03140 1.23845 0.97596 1.05594 0.78650 1.87025 1.87546 1.26237 1.21594 0.72879 0.85016 0.92074 0.90425 0.78699 0.83446 0.90627 0.90893 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.45 19.25 74.32 1.43 -7.02 16 2 C -0.22 -10.32 13.65 31.13 0.42 -9.89 16 3 C 0.20 10.54 5.54 84.57 0.47 11.01 16 4 N -0.45 -23.78 2.46 -655.49 -1.61 -25.39 16 5 C -0.35 -17.42 6.28 84.07 0.53 -16.89 16 6 H 0.11 5.02 6.00 -10.84 -0.07 4.96 16 7 C 0.03 1.47 5.39 84.93 0.46 1.93 16 8 N -0.87 -43.17 10.94 21.67 0.24 -42.93 16 9 Si 0.96 34.96 29.55 68.60 2.03 36.99 16 10 H -0.24 -7.84 7.11 99.48 0.71 -7.13 16 11 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 12 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 13 C 0.54 29.62 7.42 85.06 0.63 30.25 16 14 O -0.62 -37.38 15.45 11.36 0.18 -37.21 16 15 C -0.29 -13.98 6.11 22.87 0.14 -13.84 16 16 S 0.32 12.34 18.57 -56.49 -1.05 11.29 16 17 C -0.27 -9.11 11.17 66.91 0.75 -8.36 16 18 C 0.01 0.36 6.54 21.75 0.14 0.50 16 19 C 0.09 3.85 6.58 22.44 0.15 3.99 16 20 O -0.30 -12.90 9.62 -90.56 -0.87 -13.77 16 21 C 0.00 0.08 7.13 72.06 0.51 0.60 16 22 C 0.02 0.44 7.15 72.06 0.52 0.95 16 23 O -0.31 -9.57 10.78 -112.95 -1.22 -10.78 16 24 H 0.26 6.96 7.80 -4.41 -0.03 6.93 16 25 H 0.13 6.92 5.39 -2.39 -0.01 6.91 16 26 H 0.06 3.29 7.38 -2.39 -0.02 3.27 16 27 H 0.29 12.95 8.31 -92.71 -0.77 12.18 16 28 H 0.20 4.98 8.06 -2.91 -0.02 4.95 16 29 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -70.18 296.39 4.96 -65.23 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.12 Total: 23.35 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.15 Total: -6.77 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -1.38 Total: -68.33 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: -1.91 Total: -61.76 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Atomic # 16 Polarization: 12.34 SS G_CDS: -1.05 Total: 11.29 kcal Total: -70.18 4.96 -65.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847018381.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.274 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds