Wall clock time and date at job start Tue Mar 31 2020 07:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33235 * 125.53157 * 2 1 4 4 C 1.30829 * 109.83720 * 179.79915 * 3 2 1 5 5 N 1.34435 * 108.06973 * 0.38095 * 4 3 2 6 6 C 1.46507 * 126.81892 * 179.89592 * 5 4 3 7 7 C 1.50697 * 109.47102 * 124.70618 * 6 5 4 8 8 C 1.38106 * 120.03142 * 265.00068 * 7 6 5 9 9 C 1.38389 * 120.06056 * 180.02562 * 8 7 6 10 10 Cl 1.73598 * 119.94864 * 179.97438 * 9 8 7 11 11 C 1.38433 * 120.10688 * 359.97438 * 9 8 7 12 12 C 1.38061 * 120.06091 * 359.97438 * 11 9 8 13 13 C 1.38859 * 120.02727 * 85.25048 * 7 6 5 14 14 O 1.35765 * 120.05435 * 0.02579 * 13 7 6 15 15 C 1.34827 * 116.99596 * 174.62920 * 14 13 7 16 16 H 1.07994 * 120.00467 * 5.06318 * 15 14 13 17 17 C 1.38651 * 119.99996 * 185.06556 * 15 14 13 18 18 N 1.31563 * 119.99469 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00346 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47167 * 89.99390 * 19 17 15 21 21 H 1.48495 * 109.47005 * 209.99921 * 19 17 15 22 22 H 1.48506 * 109.46912 * 329.99423 * 19 17 15 23 23 N 1.30726 * 125.52518 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47073 * 269.96246 * 1 2 3 25 25 H 1.08997 * 109.46820 * 29.96142 * 1 2 3 26 26 H 1.09004 * 109.47205 * 149.96244 * 1 2 3 27 27 H 1.07996 * 125.96725 * 180.23440 * 4 3 2 28 28 H 1.09006 * 109.47213 * 4.70949 * 6 5 4 29 29 H 1.08994 * 109.47153 * 244.70893 * 6 5 4 30 30 H 1.08007 * 119.97048 * 359.97438 * 8 7 6 31 31 H 1.08002 * 119.97060 * 179.97438 * 11 9 8 32 32 H 1.08001 * 120.03433 * 180.02562 * 12 11 9 33 33 H 0.97008 * 119.99309 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5408 0.7304 0.0043 5 7 3.5965 -0.6128 -0.0013 6 6 4.8048 -1.4414 -0.0014 7 6 4.7582 -2.3977 1.1624 8 6 5.3810 -2.0708 2.3509 9 6 5.3390 -2.9487 3.4199 10 17 6.1234 -2.5351 4.9123 11 6 4.6726 -4.1562 3.3010 12 6 4.0474 -4.4873 2.1154 13 6 4.0934 -3.6105 1.0390 14 8 3.4852 -3.9367 -0.1302 15 6 2.9544 -5.1728 -0.2199 16 1 2.9518 -5.8233 0.6421 17 6 2.4120 -5.6090 -1.4191 18 7 2.4149 -4.8164 -2.4691 19 14 1.6761 -7.3214 -1.5434 20 1 0.2331 -7.2664 -1.1968 21 1 1.8331 -7.8282 -2.9303 22 1 2.3770 -8.2310 -0.6017 23 7 2.2666 -1.0639 -0.0005 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3634 -0.8897 -0.5144 27 1 4.3878 1.4003 0.0089 28 1 5.6835 -0.8026 0.0882 29 1 4.8587 -2.0050 -0.9328 30 1 5.9020 -1.1295 2.4460 31 1 4.6416 -4.8399 4.1365 32 1 3.5272 -5.4293 2.0232 33 1 2.0357 -5.1217 -3.3082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853718440.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:48 Heat of formation + Delta-G solvation = 79.001886 kcal Electronic energy + Delta-G solvation = -20791.088258 eV Core-core repulsion = 17459.549229 eV Total energy + Delta-G solvation = -3331.539028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52702 -39.38174 -36.92822 -35.73241 -34.24298 -32.44637 -31.48811 -30.73484 -29.05404 -28.24966 -25.63841 -25.37750 -21.99166 -21.83994 -20.84051 -19.92249 -18.20767 -17.28263 -16.43569 -15.65503 -15.37099 -14.95743 -14.62207 -14.54959 -13.95289 -13.72465 -13.22867 -13.08823 -12.99183 -12.52835 -12.42602 -12.13855 -12.01517 -11.89938 -11.38459 -11.33572 -11.20251 -10.93496 -10.56789 -10.52361 -10.45222 -9.62329 -9.46747 -9.19915 -8.94838 -8.88994 -8.48126 -7.36367 -6.60675 -4.17533 1.69933 1.99230 2.22602 2.73103 2.97609 3.04755 3.05416 3.10043 3.39525 3.83439 4.25445 4.58313 4.79438 4.97208 5.02528 5.13680 5.22389 5.43608 5.50470 5.67910 5.81288 5.89352 6.01481 6.07525 6.20821 6.27918 6.47120 6.70954 6.76038 6.81053 7.00286 7.01832 7.13730 7.34458 7.42865 7.80803 8.63723 8.83292 9.47627 10.54842 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.007184 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.642313 B = 3896.445846 C = 6068.653832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.191 3.809 3 N -0.553 5.553 4 C 0.233 3.767 5 N -0.360 5.360 6 C 0.189 3.811 7 C -0.189 4.189 8 C -0.040 4.040 9 C -0.135 4.135 10 Cl -0.105 7.105 11 C -0.048 4.048 12 C -0.227 4.227 13 C 0.182 3.818 14 O -0.141 6.141 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.046 3.954 18 N -0.845 5.845 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.266 1.266 23 N -0.263 5.263 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.211 0.789 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 5.320 5.580 8.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 N -0.282 5.282 4 C -0.064 4.064 5 N -0.151 5.151 6 C 0.068 3.932 7 C -0.192 4.192 8 C -0.060 4.060 9 C -0.162 4.162 10 Cl -0.077 7.077 11 C -0.067 4.067 12 C -0.247 4.247 13 C 0.124 3.876 14 O -0.041 6.041 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.160 4.160 18 N -0.478 5.478 19 Si 0.765 3.235 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.191 1.191 23 N -0.092 5.092 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.227 0.773 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.155 0.845 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.211 5.011 5.170 7.883 hybrid contribution 0.117 -0.813 0.209 0.848 sum 3.328 4.197 5.378 7.591 Atomic orbital electron populations 1.19966 0.84730 1.03488 1.02985 1.24286 0.98187 0.86043 1.00609 1.70271 1.00533 1.31530 1.25882 1.25838 0.96887 0.84720 0.98957 1.50756 1.06348 1.05481 1.52551 1.20364 0.81910 0.91794 0.99130 1.18569 1.08589 0.96128 0.95892 1.20359 0.97463 0.97624 0.90512 1.20171 1.09288 0.98727 0.88032 1.98280 1.80548 1.93899 1.34965 1.20680 0.94641 0.94196 0.97200 1.21108 1.07639 1.02672 0.93257 1.19073 0.89229 0.92017 0.87234 1.84013 1.59044 1.32674 1.28380 1.21378 1.38305 0.88806 0.98409 0.88923 1.25301 0.96724 0.99845 0.94163 1.70051 1.40606 1.35791 1.01334 0.85718 0.79463 0.80059 0.78297 1.19685 1.20138 1.19066 1.78477 0.86485 1.21396 1.22819 0.90626 0.90342 0.90142 0.77292 0.88322 0.87923 0.86121 0.86324 0.84521 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.51 36.00 0.38 -0.42 16 2 C 0.19 3.70 8.14 -156.85 -1.28 2.42 16 3 N -0.55 -10.01 11.19 -11.98 -0.13 -10.14 16 4 C 0.23 3.65 12.63 -90.65 -1.14 2.51 16 5 N -0.36 -6.66 3.68 -63.81 -0.23 -6.89 16 6 C 0.19 3.18 6.41 -5.19 -0.03 3.15 16 7 C -0.19 -3.59 5.36 -104.44 -0.56 -4.15 16 8 C -0.04 -0.67 9.46 -39.57 -0.37 -1.05 16 9 C -0.14 -2.32 6.32 -39.45 -0.25 -2.57 16 10 Cl -0.11 -1.57 28.95 -51.86 -1.50 -3.08 16 11 C -0.05 -0.86 9.82 -39.57 -0.39 -1.24 16 12 C -0.23 -4.64 9.17 -39.40 -0.36 -5.00 16 13 C 0.18 4.05 6.62 -39.10 -0.26 3.79 16 14 O -0.14 -3.67 8.89 0.01 0.00 -3.67 16 15 C -0.39 -10.26 9.49 30.88 0.29 -9.96 16 16 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 17 C 0.05 1.20 5.49 -17.51 -0.10 1.11 16 18 N -0.85 -23.43 13.67 55.48 0.76 -22.67 16 19 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 23 N -0.26 -5.78 12.56 32.42 0.41 -5.38 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.21 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.10 1.16 8.00 -51.93 -0.42 0.75 16 29 H 0.10 1.95 7.68 -51.93 -0.40 1.55 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.14 2.77 5.64 -52.49 -0.30 2.47 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -31.40 312.66 -8.14 -39.54 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.06 Total: 4.47 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -4.07 Total: -11.42 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.80 Total: -45.08 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.00 Total: -3.67 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.40 -8.14 -39.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853718440.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.544 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds