Wall clock time and date at job start Tue Mar 31 2020 07:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33235 * 125.53157 * 2 1 4 4 C 1.30829 * 109.83720 * 179.79915 * 3 2 1 5 5 N 1.34435 * 108.06973 * 0.38095 * 4 3 2 6 6 C 1.46507 * 126.81892 * 179.89592 * 5 4 3 7 7 C 1.50697 * 109.47102 * 124.70618 * 6 5 4 8 8 C 1.38106 * 120.03142 * 265.00068 * 7 6 5 9 9 C 1.38389 * 120.06056 * 180.02562 * 8 7 6 10 10 Cl 1.73598 * 119.94864 * 179.97438 * 9 8 7 11 11 C 1.38433 * 120.10688 * 359.97438 * 9 8 7 12 12 C 1.38061 * 120.06091 * 359.97438 * 11 9 8 13 13 C 1.38859 * 120.02727 * 85.25048 * 7 6 5 14 14 O 1.35765 * 120.05435 * 0.02579 * 13 7 6 15 15 C 1.34827 * 116.99596 * 174.62920 * 14 13 7 16 16 H 1.07994 * 120.00467 * 5.06318 * 15 14 13 17 17 C 1.38651 * 119.99996 * 185.06556 * 15 14 13 18 18 N 1.31563 * 119.99469 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00346 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47167 * 89.99390 * 19 17 15 21 21 H 1.48495 * 109.47005 * 209.99921 * 19 17 15 22 22 H 1.48506 * 109.46912 * 329.99423 * 19 17 15 23 23 N 1.30726 * 125.52518 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.47073 * 269.96246 * 1 2 3 25 25 H 1.08997 * 109.46820 * 29.96142 * 1 2 3 26 26 H 1.09004 * 109.47205 * 149.96244 * 1 2 3 27 27 H 1.07996 * 125.96725 * 180.23440 * 4 3 2 28 28 H 1.09006 * 109.47213 * 4.70949 * 6 5 4 29 29 H 1.08994 * 109.47153 * 244.70893 * 6 5 4 30 30 H 1.08007 * 119.97048 * 359.97438 * 8 7 6 31 31 H 1.08002 * 119.97060 * 179.97438 * 11 9 8 32 32 H 1.08001 * 120.03433 * 180.02562 * 12 11 9 33 33 H 0.97008 * 119.99309 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5408 0.7304 0.0043 5 7 3.5965 -0.6128 -0.0013 6 6 4.8048 -1.4414 -0.0014 7 6 4.7582 -2.3977 1.1624 8 6 5.3810 -2.0708 2.3509 9 6 5.3390 -2.9487 3.4199 10 17 6.1234 -2.5351 4.9123 11 6 4.6726 -4.1562 3.3010 12 6 4.0474 -4.4873 2.1154 13 6 4.0934 -3.6105 1.0390 14 8 3.4852 -3.9367 -0.1302 15 6 2.9544 -5.1728 -0.2199 16 1 2.9518 -5.8233 0.6421 17 6 2.4120 -5.6090 -1.4191 18 7 2.4149 -4.8164 -2.4691 19 14 1.6761 -7.3214 -1.5434 20 1 0.2331 -7.2664 -1.1968 21 1 1.8331 -7.8282 -2.9303 22 1 2.3770 -8.2310 -0.6017 23 7 2.2666 -1.0639 -0.0005 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3634 -0.8897 -0.5144 27 1 4.3878 1.4003 0.0089 28 1 5.6835 -0.8026 0.0882 29 1 4.8587 -2.0050 -0.9328 30 1 5.9020 -1.1295 2.4460 31 1 4.6416 -4.8399 4.1365 32 1 3.5272 -5.4293 2.0232 33 1 2.0357 -5.1217 -3.3082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853718440.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:47 Heat of formation + Delta-G solvation = 61.124292 kcal Electronic energy + Delta-G solvation = -20791.863488 eV Core-core repulsion = 17459.549229 eV Total energy + Delta-G solvation = -3332.314259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88268 -40.96671 -38.50115 -37.12237 -35.62246 -34.29273 -32.84825 -32.15701 -30.56208 -29.64666 -27.42758 -26.80015 -23.52913 -23.24004 -22.25685 -21.31339 -19.93026 -18.91473 -17.80348 -17.15454 -16.86149 -16.48784 -16.15758 -15.88980 -15.52764 -15.31480 -14.79726 -14.46065 -14.40330 -13.91311 -13.75000 -13.63615 -13.46849 -13.20906 -12.85092 -12.81870 -12.78742 -12.36683 -12.15706 -11.91682 -11.87503 -11.29515 -10.85975 -10.76926 -10.62978 -10.28810 -9.94470 -8.96018 -8.48070 -6.13294 0.22953 0.47328 0.89989 1.32303 1.34524 1.41699 1.49715 1.67100 2.04473 2.14517 2.69726 3.10927 3.36543 3.42254 3.61969 3.76934 3.97099 4.08412 4.20765 4.34477 4.42882 4.50878 4.71673 4.77650 4.87212 4.92018 4.98481 5.07397 5.28122 5.37728 5.43346 5.54269 5.64856 5.88178 5.95905 6.13113 6.96014 7.27888 7.72110 8.72144 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.009910 B = 0.007184 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.642313 B = 3896.445846 C = 6068.653832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.182 3.818 3 N -0.572 5.572 4 C 0.251 3.749 5 N -0.372 5.372 6 C 0.188 3.812 7 C -0.187 4.187 8 C -0.035 4.035 9 C -0.124 4.124 10 Cl -0.074 7.074 11 C -0.048 4.048 12 C -0.244 4.244 13 C 0.153 3.847 14 O -0.185 6.185 15 C -0.413 4.413 16 H 0.099 0.901 17 C -0.010 4.010 18 N -0.903 5.903 19 Si 1.009 2.991 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.253 1.253 23 N -0.331 5.331 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.269 0.731 28 H 0.160 0.840 29 H 0.069 0.931 30 H 0.161 0.839 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.273 6.813 7.891 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 N -0.301 5.301 4 C -0.044 4.044 5 N -0.162 5.162 6 C 0.068 3.932 7 C -0.189 4.189 8 C -0.054 4.054 9 C -0.151 4.151 10 Cl -0.046 7.046 11 C -0.067 4.067 12 C -0.263 4.263 13 C 0.099 3.901 14 O -0.088 6.088 15 C -0.489 4.489 16 H 0.116 0.884 17 C -0.210 4.210 18 N -0.540 5.540 19 Si 0.829 3.171 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.176 1.176 23 N -0.160 5.160 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.285 0.715 28 H 0.178 0.822 29 H 0.087 0.913 30 H 0.179 0.821 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.929 6.513 7.545 11.119 hybrid contribution -0.173 -1.045 -0.176 1.073 sum 4.756 5.468 7.369 10.335 Atomic orbital electron populations 1.20082 0.82950 1.03922 1.04083 1.24928 0.99601 0.86013 0.99456 1.70317 1.01534 1.31189 1.27082 1.26976 0.97766 0.84146 0.95537 1.50721 1.05501 1.06566 1.53433 1.20535 0.83463 0.92445 0.96727 1.18976 1.07222 0.95254 0.97475 1.20759 0.96518 0.98928 0.89173 1.20446 1.07430 0.98021 0.89230 1.98302 1.79754 1.93605 1.32934 1.20930 0.93810 0.95124 0.96845 1.21203 1.08501 1.02500 0.94112 1.19712 0.89802 0.93723 0.86895 1.84018 1.61786 1.32821 1.30214 1.21767 1.38698 0.89545 0.98903 0.88367 1.26392 0.97143 1.03835 0.93614 1.70193 1.43623 1.38118 1.02019 0.84717 0.78573 0.75263 0.78544 1.19311 1.19674 1.17619 1.78431 0.88570 1.23614 1.25370 0.89114 0.88185 0.91335 0.71545 0.82242 0.91281 0.82113 0.83809 0.85440 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.58 10.51 71.24 0.75 -0.83 16 2 C 0.18 7.08 8.14 138.63 1.13 8.21 16 3 N -0.57 -19.76 11.19 -191.80 -2.15 -21.90 16 4 C 0.25 7.16 12.63 180.36 2.28 9.43 16 5 N -0.37 -13.35 3.68 -355.80 -1.31 -14.66 16 6 C 0.19 6.12 6.41 85.63 0.55 6.67 16 7 C -0.19 -6.89 5.36 -19.75 -0.11 -6.99 16 8 C -0.03 -1.05 9.46 22.27 0.21 -0.83 16 9 C -0.12 -3.85 6.32 22.35 0.14 -3.71 16 10 Cl -0.07 -1.91 28.95 -2.72 -0.08 -1.99 16 11 C -0.05 -1.63 9.82 22.27 0.22 -1.41 16 12 C -0.24 -10.08 9.17 22.39 0.21 -9.87 16 13 C 0.15 6.98 6.62 22.58 0.15 7.13 16 14 O -0.19 -10.22 8.89 -22.88 -0.20 -10.42 16 15 C -0.41 -22.85 9.49 67.92 0.64 -22.20 16 16 H 0.10 5.03 5.20 -2.91 -0.02 5.02 16 17 C -0.01 -0.55 5.49 84.83 0.47 -0.09 16 18 N -0.90 -53.46 13.67 21.61 0.30 -53.17 16 19 Si 1.01 41.83 29.55 68.60 2.03 43.86 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 23 N -0.33 -14.89 12.56 -51.33 -0.64 -15.53 16 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16 26 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.27 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.16 3.06 8.00 -2.38 -0.02 3.04 16 29 H 0.07 2.72 7.68 -2.39 -0.02 2.70 16 30 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 31 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.13 5.39 5.64 -2.91 -0.02 5.37 16 33 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -74.42 312.66 5.73 -68.70 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.15 Total: 19.62 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 6.63 Total: -14.49 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -3.81 Total: -105.27 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.20 Total: -10.42 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -74.42 5.73 -68.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853718440.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.822 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds