Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47218 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47358 * 179.97438 * 17 16 15 19 19 F 1.35092 * 120.00177 * 275.00018 * 18 17 16 20 20 C 1.31749 * 119.99833 * 95.00198 * 18 17 16 21 21 F 1.35105 * 119.99895 * 359.97438 * 20 18 17 22 22 F 1.35097 * 120.00329 * 180.02562 * 20 18 17 23 23 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 24 24 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 25 25 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 26 26 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 27 27 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 28 28 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 29 29 H 1.09007 * 109.46999 * 300.00013 * 17 16 15 30 30 H 1.09006 * 109.47297 * 59.99693 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2164 -5.1063 -0.0015 18 6 4.5640 -5.7809 0.0042 19 9 5.2190 -5.9913 -1.1584 20 6 5.1033 -6.1653 1.1431 21 9 4.4484 -5.9544 2.3059 22 9 6.3116 -6.7695 1.1484 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.5753 4.9451 0.0298 27 1 3.9654 -3.2905 -0.8867 28 1 3.9562 -3.2921 0.8932 29 1 2.6570 -5.4037 0.8856 30 1 2.6659 -5.4028 -0.8945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863328428.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = -87.773360 kcal Electronic energy + Delta-G solvation = -20319.710722 eV Core-core repulsion = 16441.126743 eV Total energy + Delta-G solvation = -3878.583979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.050 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.10290 -50.44659 -49.53535 -42.85231 -36.10529 -35.92295 -35.37250 -32.03314 -30.98671 -28.44362 -27.32141 -25.24143 -23.34429 -22.27296 -21.83566 -20.20296 -19.63056 -19.06833 -18.54538 -18.12346 -17.14269 -16.91354 -16.72359 -16.29747 -15.86684 -15.79677 -15.59514 -15.52746 -15.28343 -15.18497 -14.87435 -14.52550 -14.19642 -13.77283 -13.57527 -13.13783 -13.00064 -12.85935 -12.56395 -11.96903 -11.72727 -11.53461 -11.41354 -10.91421 -10.57365 -10.37824 -10.06450 -9.49819 -8.69652 -6.87168 -0.08510 0.33298 0.97570 1.09965 1.53287 1.58939 1.88155 1.92893 2.11591 2.20910 2.40620 3.03537 3.10117 3.30339 3.64386 3.75061 3.94744 4.04075 4.35456 4.41136 4.47980 4.57383 4.63987 4.69331 4.87423 5.06600 5.22125 5.36560 5.69103 5.99771 6.38475 6.56314 7.91932 8.14471 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.003873 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.210416 B = 7228.358169 C = 7934.249098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.515 5.515 3 C 0.325 3.675 4 C -0.509 4.509 5 H 0.085 0.915 6 C 0.044 3.956 7 N -0.823 5.823 8 Si 1.144 2.856 9 H -0.297 1.297 10 H -0.278 1.278 11 H -0.295 1.295 12 N -0.449 5.449 13 N -0.312 5.312 14 C 0.077 3.923 15 S 0.030 5.970 16 C -0.103 4.103 17 C -0.068 4.068 18 C 0.032 3.968 19 F -0.119 7.119 20 C 0.181 3.819 21 F -0.103 7.103 22 F -0.122 7.122 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.287 0.713 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -20.884 0.677 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.215 5.215 3 C 0.078 3.922 4 C -0.551 4.551 5 H 0.103 0.897 6 C -0.177 4.177 7 N -0.448 5.448 8 Si 0.973 3.027 9 H -0.226 1.226 10 H -0.205 1.205 11 H -0.223 1.223 12 N -0.298 5.298 13 N -0.154 5.154 14 C -0.298 4.298 15 S 0.257 5.743 16 C -0.252 4.252 17 C -0.106 4.106 18 C 0.007 3.993 19 F -0.098 7.098 20 C 0.141 3.859 21 F -0.082 7.082 22 F -0.101 7.101 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.148 0.852 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.518 -20.688 0.563 20.752 hybrid contribution -1.482 0.397 0.293 1.562 sum -3.000 -20.291 0.855 20.529 Atomic orbital electron populations 1.21935 0.74504 1.04750 1.03852 1.46209 1.08460 1.04093 1.62718 1.21790 0.85713 0.89971 0.94691 1.19418 0.97498 0.87620 1.50528 0.89704 1.27710 1.09590 0.91510 0.88847 1.70663 1.21930 1.18470 1.33777 0.82221 0.69802 0.71812 0.78845 1.22625 1.20481 1.22250 1.73867 1.17149 1.02303 1.36487 1.74193 1.17283 1.04863 1.19100 1.26632 0.90252 0.96251 1.16655 1.84227 1.09988 0.85598 1.94502 1.23448 0.97633 0.97053 1.07062 1.20663 0.90894 0.89854 1.09237 1.19449 0.95954 1.04360 0.79492 1.91560 1.80280 1.92590 1.45377 1.16186 0.82220 1.04436 0.83024 1.91778 1.77379 1.92672 1.46392 1.91751 1.40836 1.81186 1.96367 0.90221 0.87927 0.89999 0.90187 0.89330 0.89447 0.85182 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.88 10.89 127.77 1.39 4.27 16 2 N -0.51 -22.56 3.26 -543.63 -1.77 -24.33 16 3 C 0.33 17.21 7.27 133.23 0.97 18.18 16 4 C -0.51 -27.38 9.50 23.09 0.22 -27.16 16 5 H 0.08 4.39 7.46 -2.91 -0.02 4.37 16 6 C 0.04 2.37 5.52 85.29 0.47 2.85 16 7 N -0.82 -44.25 13.65 21.86 0.30 -43.95 16 8 Si 1.14 58.22 25.90 68.60 1.78 59.99 16 9 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 10 H -0.28 -14.80 6.76 99.48 0.67 -14.13 16 11 H -0.29 -15.50 7.11 99.48 0.71 -14.80 16 12 N -0.45 -25.06 7.52 -55.02 -0.41 -25.47 16 13 N -0.31 -15.67 11.62 -56.17 -0.65 -16.32 16 14 C 0.08 3.25 8.09 179.18 1.45 4.70 16 15 S 0.03 0.82 21.79 -56.49 -1.23 -0.41 16 16 C -0.10 -2.44 5.21 71.98 0.37 -2.07 16 17 C -0.07 -1.00 5.43 29.85 0.16 -0.84 16 18 C 0.03 0.55 6.78 24.96 0.17 0.72 16 19 F -0.12 -2.43 17.11 44.97 0.77 -1.66 16 20 C 0.18 3.31 9.17 67.09 0.62 3.93 16 21 F -0.10 -1.85 16.23 44.97 0.73 -1.12 16 22 F -0.12 -2.50 17.11 44.97 0.77 -1.73 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.10 2.55 7.85 -2.39 -0.02 2.53 16 25 H 0.08 2.56 7.48 -2.39 -0.02 2.54 16 26 H 0.29 14.63 8.72 -92.71 -0.81 13.82 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.09 2.33 8.14 -2.40 -0.02 2.31 16 29 H 0.13 1.44 7.38 -2.38 -0.02 1.42 16 30 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -67.07 294.45 7.22 -59.85 By element: Atomic # 1 Polarization: -10.54 SS G_CDS: 1.12 Total: -9.42 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.82 Total: 4.58 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -2.54 Total: -110.07 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 2.27 Total: -4.52 kcal Atomic # 14 Polarization: 58.22 SS G_CDS: 1.78 Total: 59.99 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.23 Total: -0.41 kcal Total: -67.07 7.22 -59.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863328428.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.922 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds