Wall clock time and date at job start Tue Mar 31 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47072 * 299.99584 * 3 2 1 6 6 H 1.48501 * 109.47474 * 59.99284 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99925 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.39675 * 119.99822 * 180.02562 * 10 9 7 12 12 C 1.38909 * 120.07682 * 359.72149 * 11 10 9 13 13 C 1.38104 * 119.92467 * 179.74611 * 12 11 10 14 14 C 1.38288 * 120.07232 * 0.55363 * 13 12 11 15 15 S 1.76208 * 119.92430 * 179.71806 * 14 13 12 16 16 O 1.42104 * 102.99561 * 23.83423 * 15 14 13 17 17 C 1.81399 * 103.00254 * 269.97890 * 15 14 13 18 18 F 1.39906 * 109.46950 * 59.99949 * 17 15 14 19 19 F 1.39897 * 109.47128 * 179.97438 * 17 15 14 20 20 F 1.39892 * 109.47061 * 300.00346 * 17 15 14 21 21 C 1.38283 * 120.15369 * 359.70146 * 14 13 12 22 22 C 1.38110 * 120.07007 * 0.02562 * 21 14 13 23 23 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 25 25 H 1.09005 * 109.47240 * 300.00276 * 9 7 2 26 26 H 0.96999 * 119.99984 * 0.02562 * 10 9 7 27 27 H 1.08001 * 120.04020 * 0.02562 * 12 11 10 28 28 H 1.07996 * 119.96736 * 180.27476 * 13 12 11 29 29 H 1.08003 * 119.96586 * 180.02562 * 21 14 13 30 30 H 1.08003 * 120.03111 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7376 -4.9295 0.0015 12 6 0.3723 -5.1851 0.0058 13 6 -0.0847 -6.4884 0.0002 14 6 0.8154 -7.5383 0.0018 15 16 0.2281 -9.1996 0.0021 16 8 -1.0719 -9.0791 -0.5589 17 6 0.0908 -9.5836 1.7697 18 9 -0.8075 -8.6956 2.3713 19 9 -0.3732 -10.8939 1.9275 20 9 1.3464 -9.4570 2.3733 21 6 2.1753 -7.2874 0.0028 22 6 2.6390 -5.9864 0.0027 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4353 0.0028 27 1 -0.3312 -4.3657 0.0090 28 1 -1.1460 -6.6879 -0.0009 29 1 2.8755 -8.1096 0.0036 30 1 3.7012 -5.7912 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865732576.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:07 Heat of formation + Delta-G solvation = -157.526975 kcal Electronic energy + Delta-G solvation = -20542.682357 eV Core-core repulsion = 16628.780883 eV Total energy + Delta-G solvation = -3913.901474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.85662 -47.55940 -47.48807 -39.10156 -36.42961 -35.33724 -32.82909 -30.77240 -29.53170 -26.68694 -26.19913 -23.47910 -22.35411 -21.14574 -19.48520 -18.49676 -18.37273 -17.88449 -17.46480 -16.47861 -15.73979 -15.46855 -14.67025 -14.43057 -14.40924 -14.12174 -13.99156 -13.94087 -13.66109 -13.64249 -13.55151 -13.32722 -13.28033 -12.75259 -12.27428 -12.20981 -12.10757 -11.09919 -11.02542 -10.83950 -10.59817 -10.30870 -9.94829 -9.56595 -9.14064 -8.79745 -8.70744 -7.07331 -6.35436 -4.42583 0.41497 1.69384 1.69859 2.04921 3.03872 3.13238 3.21142 3.23822 3.50558 4.01436 4.03176 4.14723 4.23282 4.28261 5.01373 5.02314 5.13185 5.59232 5.70449 5.93618 6.17033 6.35010 6.51910 6.61502 6.83909 7.12316 7.17876 7.44370 7.73952 7.91408 8.33976 8.66905 9.24823 10.74973 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.003218 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.975549 B = 8698.237056 C = 8813.056990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.242 3.758 10 N -0.707 5.707 11 C 0.280 3.720 12 C -0.216 4.216 13 C 0.016 3.984 14 C -0.559 4.559 15 S 1.387 4.613 16 O -0.789 6.789 17 C 0.099 3.901 18 F -0.193 7.193 19 F -0.184 7.184 20 F -0.173 7.173 21 C 0.023 3.977 22 C -0.231 4.231 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.397 0.603 27 H 0.132 0.868 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 -18.911 -0.624 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.121 3.879 10 N -0.324 5.324 11 C 0.164 3.836 12 C -0.241 4.241 13 C -0.005 4.005 14 C -0.665 4.665 15 S 1.573 4.427 16 O -0.785 6.785 17 C -0.034 4.034 18 F -0.175 7.175 19 F -0.166 7.166 20 F -0.155 7.155 21 C 0.002 3.998 22 C -0.255 4.255 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.231 0.769 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.943 -19.224 -1.185 19.884 hybrid contribution -0.587 2.550 1.486 3.010 sum 4.356 -16.673 0.301 17.235 Atomic orbital electron populations 1.69942 1.06146 1.27574 1.48675 1.24940 0.94963 0.99628 0.94355 0.86313 0.79842 0.82623 0.77901 1.19568 1.20644 1.20659 1.21172 0.93419 0.90160 1.53590 0.91731 1.19324 0.88702 0.82591 0.97272 1.45921 1.10424 1.02844 1.73244 1.18389 0.93099 0.85781 0.86305 1.20828 0.94289 0.97194 1.11759 1.20737 0.98717 0.91827 0.89259 1.26069 1.00290 1.12150 1.28026 1.71357 0.98287 0.94902 0.78182 1.93126 1.39667 1.85396 1.60305 1.33532 0.75673 0.77065 1.17155 1.93187 1.68419 1.67908 1.87981 1.93112 1.88767 1.37532 1.97197 1.93125 1.40187 1.95450 1.86707 1.20391 0.92516 0.96509 0.90393 1.20642 0.98895 0.91836 1.14164 0.92279 0.95455 0.95514 0.76871 0.84989 0.85853 0.84965 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -14.01 9.28 -34.44 -0.32 -14.33 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.24 5.76 4.67 -5.20 -0.02 5.74 16 10 N -0.71 -13.54 5.73 -59.81 -0.34 -13.89 16 11 C 0.28 4.84 6.65 -83.79 -0.56 4.29 16 12 C -0.22 -3.89 9.31 -39.38 -0.37 -4.26 16 13 C 0.02 0.26 9.43 -39.61 -0.37 -0.12 16 14 C -0.56 -7.31 5.54 -39.55 -0.22 -7.53 16 15 S 1.39 14.15 13.58 -107.50 -1.46 12.69 16 16 O -0.79 -11.99 16.89 -35.23 -0.60 -12.58 16 17 C 0.10 1.25 3.47 101.05 0.35 1.61 16 18 F -0.19 -3.13 17.32 2.25 0.04 -3.09 16 19 F -0.18 -2.32 17.36 2.25 0.04 -2.28 16 20 F -0.17 -2.07 17.32 2.25 0.04 -2.03 16 21 C 0.02 0.26 9.74 -39.61 -0.39 -0.12 16 22 C -0.23 -3.14 9.90 -39.38 -0.39 -3.53 16 23 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 24 H 0.03 0.70 7.96 -51.93 -0.41 0.29 16 25 H 0.03 0.69 7.94 -51.93 -0.41 0.28 16 26 H 0.40 6.86 8.33 -40.82 -0.34 6.52 16 27 H 0.13 2.55 6.74 -52.49 -0.35 2.20 16 28 H 0.12 2.02 7.45 -52.49 -0.39 1.63 16 29 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 30 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -32.33 296.22 -6.77 -39.10 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.29 Total: 3.10 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.38 Total: -16.63 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.39 Total: -37.87 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.60 Total: -12.58 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.12 Total: -7.40 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 14.15 SS G_CDS: -1.46 Total: 12.69 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.33 -6.77 -39.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865732576.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.423 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds